Wall clock time and date at job start Tue Mar 31 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00676 * 2 1 4 4 H 1.09000 * 109.46534 * 330.00082 * 3 2 1 5 5 C 1.52997 * 109.47074 * 89.99638 * 3 2 1 6 6 C 1.53003 * 109.46919 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.47321 * 300.00363 * 6 5 3 8 8 C 1.53001 * 109.46991 * 59.99669 * 7 6 5 9 9 H 1.09005 * 109.46709 * 60.00543 * 8 7 6 10 10 C 1.50698 * 109.47039 * 180.02562 * 8 7 6 11 11 O 1.21275 * 119.99889 * 87.49044 * 10 8 7 12 12 N 1.34779 * 119.99851 * 267.49636 * 10 8 7 13 13 C 1.46499 * 120.00294 * 3.97568 * 12 10 8 14 14 C 1.50698 * 109.47206 * 84.38300 * 13 12 10 15 15 H 1.08003 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99933 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00197 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47013 * 89.99687 * 18 16 14 20 20 H 1.48499 * 109.47265 * 210.00062 * 18 16 14 21 21 H 1.48503 * 109.46893 * 330.00066 * 18 16 14 22 22 C 1.46507 * 119.99840 * 183.97038 * 12 10 8 23 23 C 1.52995 * 109.47146 * 275.29892 * 22 12 10 24 24 F 1.39893 * 109.47312 * 60.00386 * 23 22 12 25 25 F 1.39908 * 109.46588 * 180.02562 * 23 22 12 26 26 F 1.39904 * 109.47126 * 299.99608 * 23 22 12 27 27 C 1.52993 * 109.47289 * 300.00424 * 8 7 6 28 28 H 1.09003 * 109.46955 * 300.00143 * 1 2 3 29 29 H 1.08999 * 109.47199 * 59.99434 * 1 2 3 30 30 H 1.08994 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47600 * 300.00268 * 5 3 2 32 32 H 1.09000 * 109.47077 * 60.00777 * 5 3 2 33 33 H 1.08994 * 109.47251 * 59.99944 * 6 5 3 34 34 H 1.09000 * 109.47270 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.46951 * 300.00359 * 7 6 5 36 36 H 1.08994 * 109.47160 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46652 * 324.38169 * 13 12 10 38 38 H 1.08998 * 109.47041 * 204.38462 * 13 12 10 39 39 H 0.96999 * 120.00369 * 0.02562 * 17 16 14 40 40 H 1.09003 * 109.46815 * 35.30182 * 22 12 10 41 41 H 1.08997 * 109.46725 * 155.29512 * 22 12 10 42 42 H 1.09000 * 109.47201 * 180.02562 * 27 8 7 43 43 H 1.09005 * 109.47342 * 299.99731 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 2.8396 3.1692 1.4424 7 6 4.1883 3.1275 0.7210 8 6 3.9808 2.6615 -0.7215 9 1 3.3152 3.3553 -1.2352 10 6 5.3091 2.6198 -1.4319 11 8 5.9953 1.6214 -1.3765 12 7 5.7346 3.6921 -2.1288 13 6 4.9478 4.9280 -2.1243 14 6 5.3004 5.7435 -0.9070 15 1 6.0365 5.3776 -0.2066 16 6 4.6824 6.9561 -0.6871 17 7 3.7856 7.4014 -1.5398 18 14 5.1188 7.9667 0.8222 19 1 6.2437 8.8802 0.4978 20 1 3.9386 8.7644 1.2420 21 1 5.5209 7.0589 1.9264 22 6 6.9840 3.6220 -2.8907 23 6 8.1632 3.9304 -1.9661 24 9 8.1979 2.9949 -0.9266 25 9 9.3562 3.8640 -2.6939 26 9 8.0139 5.2152 -1.4327 27 6 3.3589 1.2637 -0.7215 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.2569 1.8014 1.9563 32 1 2.8830 1.0774 1.9563 33 1 2.1742 3.8629 0.9287 34 1 2.9878 3.5010 2.4701 35 1 4.8538 2.4337 1.2347 36 1 4.6315 4.1233 0.7213 37 1 3.8861 4.6825 -2.1022 38 1 5.1693 5.5029 -3.0234 39 1 3.5586 6.8765 -2.3233 40 1 7.1002 2.6210 -3.3064 41 1 6.9569 4.3508 -3.7007 42 1 3.2115 0.9315 -1.7491 43 1 4.0244 0.5699 -0.2077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341334024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:26 Heat of formation + Delta-G solvation = -255.944316 kcal Electronic energy + Delta-G solvation = -30131.254128 eV Core-core repulsion = 25567.778465 eV Total energy + Delta-G solvation = -4563.475663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.46265 -47.05452 -46.82925 -40.02155 -38.47792 -36.01585 -35.45449 -32.97991 -31.07680 -30.01297 -28.95125 -26.61087 -26.40724 -23.89531 -23.15821 -22.23956 -22.10488 -19.98841 -18.78852 -18.03819 -17.90804 -17.23127 -16.98089 -16.45529 -16.22813 -15.54709 -15.06498 -14.99443 -14.25257 -14.20252 -13.87301 -13.83066 -13.79526 -13.53651 -13.42182 -13.25782 -13.06083 -13.02698 -12.90789 -12.77501 -12.24906 -12.16707 -11.96014 -11.80192 -11.64060 -11.50422 -11.25114 -10.88506 -10.83625 -10.65924 -10.43569 -10.24024 -10.17648 -10.08077 -9.54087 -9.37521 -9.09187 -8.54300 -8.03429 -6.55680 -4.30132 2.92834 3.29059 3.36531 3.37170 3.49466 3.54330 3.84013 4.36356 4.40705 4.53069 4.79669 4.88518 4.89885 5.13859 5.16264 5.26315 5.27992 5.31932 5.41857 5.46457 5.51658 5.53362 5.62164 5.64858 5.68585 5.77604 5.88640 6.17523 6.20429 6.22055 6.29939 6.41176 6.47702 6.64469 6.75476 6.87986 7.06135 7.26144 7.74687 7.84194 8.29726 8.60208 8.67596 9.37460 10.80722 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.005720 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.742852 B = 4894.354095 C = 6584.775246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.092 3.908 4 H 0.061 0.939 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.090 4.090 9 H 0.097 0.903 10 C 0.529 3.471 11 O -0.550 6.550 12 N -0.595 5.595 13 C 0.226 3.774 14 C -0.606 4.606 15 H 0.063 0.937 16 C 0.029 3.971 17 N -0.905 5.905 18 Si 1.063 2.937 19 H -0.287 1.287 20 H -0.284 1.284 21 H -0.286 1.286 22 C 0.084 3.916 23 C 0.429 3.571 24 F -0.177 7.177 25 F -0.197 7.197 26 F -0.162 7.162 27 C -0.098 4.098 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -8.294 0.321 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.177 4.177 6 C -0.149 4.149 7 C -0.153 4.153 8 C -0.111 4.111 9 H 0.115 0.885 10 C 0.318 3.682 11 O -0.428 6.428 12 N -0.326 5.326 13 C 0.106 3.894 14 C -0.645 4.645 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.541 5.541 18 Si 0.892 3.108 19 H -0.213 1.213 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.042 4.042 23 C 0.373 3.627 24 F -0.159 7.159 25 F -0.179 7.179 26 F -0.143 7.143 27 C -0.136 4.136 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.613 -7.550 1.161 8.074 hybrid contribution 0.416 -0.927 -0.722 1.247 sum -2.197 -8.478 0.440 8.769 Atomic orbital electron populations 1.22748 0.81596 1.02293 0.99886 1.87899 1.19201 1.28366 1.95104 1.22137 0.94758 0.83853 0.95805 0.92119 1.22057 1.00994 0.97935 0.96723 1.21439 0.96947 0.95634 1.00865 1.21633 0.97415 1.04349 0.91919 1.21114 0.94213 0.97576 0.98177 0.88470 1.20580 0.87985 0.81916 0.77742 1.90642 1.57709 1.32873 1.61546 1.48053 1.21153 1.15270 1.48088 1.19716 0.90881 0.80093 0.98699 1.22268 1.26944 1.06451 1.08811 0.91931 1.25667 0.93653 0.95807 1.02468 1.70818 1.30468 1.40418 1.12372 0.83597 0.76316 0.75947 0.74984 1.21308 1.20933 1.21175 1.22371 0.82833 1.05816 0.93227 1.21364 0.84192 0.75479 0.81672 1.93206 1.96591 1.65501 1.60570 1.93123 1.50728 1.96313 1.77741 1.93309 1.95365 1.38487 1.87158 1.21418 0.94886 0.96538 1.00764 0.94200 0.94161 0.89990 0.92268 0.91223 0.91424 0.91468 0.92271 0.87836 0.94732 0.95356 0.92215 0.87231 0.86655 0.91685 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.42 10.35 -35.23 -0.36 -5.78 16 3 C 0.09 1.29 2.61 -26.73 -0.07 1.22 16 4 H 0.06 0.81 7.79 -51.93 -0.40 0.40 16 5 C -0.14 -1.86 5.54 -26.73 -0.15 -2.01 16 6 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 7 C -0.12 -2.01 5.18 -26.73 -0.14 -2.15 16 8 C -0.09 -1.56 1.94 -91.78 -0.18 -1.74 16 9 H 0.10 1.72 5.89 -51.93 -0.31 1.41 16 10 C 0.53 10.37 6.24 -10.99 -0.07 10.30 16 11 O -0.55 -11.77 14.60 5.56 0.08 -11.69 16 12 N -0.59 -11.50 2.40 -175.06 -0.42 -11.92 16 13 C 0.23 4.78 4.29 -5.19 -0.02 4.76 16 14 C -0.61 -14.47 6.14 -34.44 -0.21 -14.68 16 15 H 0.06 1.58 6.42 -52.48 -0.34 1.25 16 16 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 17 N -0.91 -24.08 13.65 55.43 0.76 -23.32 16 18 Si 1.06 23.40 29.90 -169.99 -5.08 18.32 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 22 C 0.08 1.43 5.48 -4.04 -0.02 1.41 16 23 C 0.43 7.98 3.29 37.16 0.12 8.10 16 24 F -0.18 -3.65 15.49 2.25 0.03 -3.62 16 25 F -0.20 -3.34 17.32 2.25 0.04 -3.30 16 26 F -0.16 -3.40 14.87 2.25 0.03 -3.36 16 27 C -0.10 -1.55 4.48 -26.74 -0.12 -1.67 16 28 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 29 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 2.09 5.56 -51.93 -0.29 1.80 16 37 H 0.04 0.74 5.80 -51.93 -0.30 0.44 16 38 H 0.03 0.62 7.65 -51.93 -0.40 0.22 16 39 H 0.27 6.95 7.22 -40.82 -0.29 6.66 16 40 H 0.11 1.70 7.65 -51.93 -0.40 1.30 16 41 H 0.12 1.69 7.79 -51.93 -0.40 1.28 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.39 7.85 -51.93 -0.41 0.98 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -28.13 349.58 -5.78 -33.92 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.11 Total: 1.69 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.02 Total: 3.81 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.34 Total: -35.24 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.28 Total: -17.48 kcal Atomic # 9 Polarization: -10.39 SS G_CDS: 0.11 Total: -10.28 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.08 Total: 18.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.13 -5.78 -33.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341334024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.029 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds