Wall clock time and date at job start Tue Mar 31 2020 14:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00676 * 2 1 4 4 H 1.09000 * 109.46534 * 330.00082 * 3 2 1 5 5 C 1.52997 * 109.47074 * 89.99638 * 3 2 1 6 6 C 1.53003 * 109.46919 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.47321 * 300.00363 * 6 5 3 8 8 C 1.53001 * 109.46991 * 59.99669 * 7 6 5 9 9 H 1.09005 * 109.46709 * 60.00543 * 8 7 6 10 10 C 1.50698 * 109.47039 * 180.02562 * 8 7 6 11 11 O 1.21275 * 119.99889 * 87.49044 * 10 8 7 12 12 N 1.34779 * 119.99851 * 267.49636 * 10 8 7 13 13 C 1.46499 * 120.00294 * 3.97568 * 12 10 8 14 14 C 1.50698 * 109.47206 * 84.38300 * 13 12 10 15 15 H 1.08003 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99933 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00197 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47013 * 89.99687 * 18 16 14 20 20 H 1.48499 * 109.47265 * 210.00062 * 18 16 14 21 21 H 1.48503 * 109.46893 * 330.00066 * 18 16 14 22 22 C 1.46507 * 119.99840 * 183.97038 * 12 10 8 23 23 C 1.52995 * 109.47146 * 275.29892 * 22 12 10 24 24 F 1.39893 * 109.47312 * 60.00386 * 23 22 12 25 25 F 1.39908 * 109.46588 * 180.02562 * 23 22 12 26 26 F 1.39904 * 109.47126 * 299.99608 * 23 22 12 27 27 C 1.52993 * 109.47289 * 300.00424 * 8 7 6 28 28 H 1.09003 * 109.46955 * 300.00143 * 1 2 3 29 29 H 1.08999 * 109.47199 * 59.99434 * 1 2 3 30 30 H 1.08994 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47600 * 300.00268 * 5 3 2 32 32 H 1.09000 * 109.47077 * 60.00777 * 5 3 2 33 33 H 1.08994 * 109.47251 * 59.99944 * 6 5 3 34 34 H 1.09000 * 109.47270 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.46951 * 300.00359 * 7 6 5 36 36 H 1.08994 * 109.47160 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46652 * 324.38169 * 13 12 10 38 38 H 1.08998 * 109.47041 * 204.38462 * 13 12 10 39 39 H 0.96999 * 120.00369 * 0.02562 * 17 16 14 40 40 H 1.09003 * 109.46815 * 35.30182 * 22 12 10 41 41 H 1.08997 * 109.46725 * 155.29512 * 22 12 10 42 42 H 1.09000 * 109.47201 * 180.02562 * 27 8 7 43 43 H 1.09005 * 109.47342 * 299.99731 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 2.8396 3.1692 1.4424 7 6 4.1883 3.1275 0.7210 8 6 3.9808 2.6615 -0.7215 9 1 3.3152 3.3553 -1.2352 10 6 5.3091 2.6198 -1.4319 11 8 5.9953 1.6214 -1.3765 12 7 5.7346 3.6921 -2.1288 13 6 4.9478 4.9280 -2.1243 14 6 5.3004 5.7435 -0.9070 15 1 6.0365 5.3776 -0.2066 16 6 4.6824 6.9561 -0.6871 17 7 3.7856 7.4014 -1.5398 18 14 5.1188 7.9667 0.8222 19 1 6.2437 8.8802 0.4978 20 1 3.9386 8.7644 1.2420 21 1 5.5209 7.0589 1.9264 22 6 6.9840 3.6220 -2.8907 23 6 8.1632 3.9304 -1.9661 24 9 8.1979 2.9949 -0.9266 25 9 9.3562 3.8640 -2.6939 26 9 8.0139 5.2152 -1.4327 27 6 3.3589 1.2637 -0.7215 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.2569 1.8014 1.9563 32 1 2.8830 1.0774 1.9563 33 1 2.1742 3.8629 0.9287 34 1 2.9878 3.5010 2.4701 35 1 4.8538 2.4337 1.2347 36 1 4.6315 4.1233 0.7213 37 1 3.8861 4.6825 -2.1022 38 1 5.1693 5.5029 -3.0234 39 1 3.5586 6.8765 -2.3233 40 1 7.1002 2.6210 -3.3064 41 1 6.9569 4.3508 -3.7007 42 1 3.2115 0.9315 -1.7491 43 1 4.0244 0.5699 -0.2077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341334024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:25 Heat of formation + Delta-G solvation = -270.891361 kcal Electronic energy + Delta-G solvation = -30131.902281 eV Core-core repulsion = 25567.778465 eV Total energy + Delta-G solvation = -4564.123816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.99390 -48.55200 -48.43499 -41.48320 -39.68454 -37.23543 -37.08177 -34.81278 -32.40816 -31.26946 -30.37111 -28.35223 -27.29879 -25.34694 -24.96749 -23.60316 -23.33383 -21.24734 -20.33363 -19.59709 -19.43955 -18.78698 -18.59169 -18.01474 -17.50458 -16.76422 -16.34113 -16.05878 -15.78169 -15.65097 -15.45079 -15.36690 -15.27739 -15.03327 -14.88556 -14.65320 -14.62173 -14.55426 -14.37927 -14.17284 -13.73356 -13.56098 -13.31774 -13.19129 -12.99809 -12.89360 -12.59551 -12.56701 -12.19328 -11.99716 -11.94310 -11.63556 -11.46575 -11.42438 -11.17414 -10.83208 -10.47160 -10.34844 -9.73134 -8.52617 -6.26237 1.38671 1.58548 1.61188 1.78796 1.83732 1.99480 2.57915 2.78438 2.91998 3.08467 3.24237 3.34734 3.51463 3.70138 3.94013 3.96654 4.13348 4.15986 4.20275 4.30866 4.34578 4.38611 4.47595 4.56489 4.57707 4.58987 4.63661 4.84901 4.90947 4.96775 5.05668 5.14368 5.14543 5.25878 5.38289 5.41784 5.47522 5.88202 6.13613 6.28787 6.42894 6.65559 7.08834 7.44712 8.84803 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.005720 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.742852 B = 4894.354095 C = 6584.775246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.096 3.904 4 H 0.070 0.930 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.111 4.111 8 C -0.085 4.085 9 H 0.095 0.905 10 C 0.524 3.476 11 O -0.569 6.569 12 N -0.597 5.597 13 C 0.235 3.765 14 C -0.593 4.593 15 H 0.046 0.954 16 C -0.007 4.007 17 N -0.931 5.931 18 Si 1.093 2.907 19 H -0.285 1.285 20 H -0.282 1.282 21 H -0.277 1.277 22 C 0.081 3.919 23 C 0.428 3.572 24 F -0.191 7.191 25 F -0.185 7.185 26 F -0.178 7.178 27 C -0.091 4.091 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -8.800 0.506 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.038 3.962 4 H 0.088 0.912 5 C -0.170 4.170 6 C -0.143 4.143 7 C -0.149 4.149 8 C -0.106 4.106 9 H 0.113 0.887 10 C 0.314 3.686 11 O -0.448 6.448 12 N -0.327 5.327 13 C 0.115 3.885 14 C -0.632 4.632 15 H 0.064 0.936 16 C -0.208 4.208 17 N -0.569 5.569 18 Si 0.918 3.082 19 H -0.211 1.211 20 H -0.208 1.208 21 H -0.202 1.202 22 C -0.045 4.045 23 C 0.372 3.628 24 F -0.173 7.173 25 F -0.167 7.167 26 F -0.160 7.160 27 C -0.129 4.129 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.520 -8.068 1.341 8.904 hybrid contribution 0.762 -0.837 -0.810 1.392 sum -2.758 -8.905 0.531 9.337 Atomic orbital electron populations 1.22988 0.79599 1.03811 1.00837 1.87868 1.21390 1.28068 1.95230 1.22037 0.93770 0.84400 0.95944 0.91203 1.21990 1.01855 0.96605 0.96544 1.21397 0.95192 0.96695 1.01027 1.21542 0.98891 1.02213 0.92289 1.21103 0.93130 0.98614 0.97796 0.88654 1.20994 0.88583 0.81591 0.77449 1.90627 1.58485 1.33504 1.62221 1.48031 1.21803 1.14544 1.48327 1.19485 0.91193 0.80412 0.97443 1.22321 1.25580 1.06254 1.09002 0.93551 1.26487 0.93560 0.96985 1.03757 1.70895 1.31962 1.40961 1.13033 0.83194 0.76171 0.75331 0.73505 1.21102 1.20785 1.20215 1.22650 0.81053 1.07753 0.93059 1.21593 0.85196 0.74486 0.81503 1.93178 1.96722 1.65938 1.61460 1.93142 1.50143 1.96187 1.77241 1.93272 1.95532 1.39666 1.87525 1.21321 0.95774 0.94856 1.00927 0.93021 0.93406 0.88312 0.90031 0.91693 0.91561 0.90328 0.93027 0.90743 0.94532 0.95429 0.92716 0.85468 0.84074 0.91706 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.65 16 2 O -0.41 -10.57 10.35 -148.98 -1.54 -12.11 16 3 C 0.10 2.52 2.61 30.59 0.08 2.60 16 4 H 0.07 1.71 7.79 -2.39 -0.02 1.69 16 5 C -0.13 -3.26 5.54 30.59 0.17 -3.09 16 6 C -0.11 -2.95 5.92 30.60 0.18 -2.77 16 7 C -0.11 -3.86 5.18 30.60 0.16 -3.70 16 8 C -0.09 -2.94 1.94 -11.54 -0.02 -2.97 16 9 H 0.10 3.32 5.89 -2.38 -0.01 3.31 16 10 C 0.52 20.40 6.24 87.66 0.55 20.95 16 11 O -0.57 -24.25 14.60 -3.02 -0.04 -24.29 16 12 N -0.60 -22.70 2.40 -826.16 -1.98 -24.68 16 13 C 0.23 9.84 4.29 85.63 0.37 10.21 16 14 C -0.59 -28.21 6.14 25.60 0.16 -28.05 16 15 H 0.05 2.36 6.42 -2.91 -0.02 2.34 16 16 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 17 N -0.93 -49.28 13.65 21.45 0.29 -48.99 16 18 Si 1.09 46.78 29.90 68.60 2.05 48.83 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 22 C 0.08 2.64 5.48 86.38 0.47 3.11 16 23 C 0.43 15.60 3.29 71.98 0.24 15.83 16 24 F -0.19 -7.86 15.49 44.97 0.70 -7.16 16 25 F -0.19 -6.03 17.32 44.97 0.78 -5.25 16 26 F -0.18 -7.43 14.87 44.97 0.67 -6.76 16 27 C -0.09 -2.81 4.48 30.59 0.14 -2.68 16 28 H 0.05 0.81 7.87 -2.39 -0.02 0.79 16 29 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.68 7.87 -2.39 -0.02 1.66 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.07 3.02 5.56 -2.39 -0.01 3.01 16 37 H 0.04 1.55 5.80 -2.39 -0.01 1.54 16 38 H 0.03 1.18 7.65 -2.39 -0.02 1.16 16 39 H 0.26 13.64 7.22 -92.71 -0.67 12.97 16 40 H 0.13 3.73 7.65 -2.39 -0.02 3.71 16 41 H 0.14 3.84 7.79 -2.39 -0.02 3.82 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.20 7.85 -2.38 -0.02 2.18 16 Total: -1.00 -59.00 349.58 6.22 -52.78 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.13 Total: 16.44 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.17 Total: 11.21 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.69 Total: -73.67 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.59 Total: -36.41 kcal Atomic # 9 Polarization: -21.33 SS G_CDS: 2.14 Total: -19.18 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.83 kcal Total: -59.00 6.22 -52.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341334024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.108 kcal (2) G-P(sol) polarization free energy of solvation -59.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds