Wall clock time and date at job start Tue Mar 31 2020 14:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00132 * 2 1 4 4 H 1.08996 * 109.46993 * 329.99255 * 3 2 1 5 5 C 1.52999 * 109.47153 * 90.00000 * 3 2 1 6 6 C 1.52998 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47283 * 299.99898 * 6 5 3 8 8 C 1.53005 * 109.47006 * 59.99737 * 7 6 5 9 9 H 1.09003 * 109.46766 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46963 * 60.00533 * 8 7 6 11 11 O 1.21280 * 119.99515 * 254.29124 * 10 8 7 12 12 N 1.34771 * 120.00049 * 74.28429 * 10 8 7 13 13 C 1.46495 * 120.00310 * 5.07534 * 12 10 8 14 14 C 1.50705 * 109.46758 * 264.62702 * 13 12 10 15 15 H 1.07995 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99777 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00318 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99975 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46712 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47037 * 119.99634 * 18 16 14 21 21 H 1.48502 * 109.47014 * 239.99742 * 18 16 14 22 22 C 1.46506 * 119.99845 * 185.06724 * 12 10 8 23 23 C 1.52996 * 109.47441 * 273.23517 * 22 12 10 24 24 F 1.39906 * 109.47185 * 55.20039 * 23 22 12 25 25 F 1.39897 * 109.47408 * 175.20611 * 23 22 12 26 26 F 1.39905 * 109.47185 * 295.20680 * 23 22 12 27 27 C 1.52998 * 109.47314 * 300.00243 * 8 7 6 28 28 H 1.08997 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47406 * 300.00347 * 1 2 3 30 30 H 1.09005 * 109.47271 * 60.00298 * 1 2 3 31 31 H 1.09000 * 109.47334 * 59.99565 * 5 3 2 32 32 H 1.09003 * 109.46737 * 300.00078 * 5 3 2 33 33 H 1.08999 * 109.47265 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.46959 * 59.99950 * 6 5 3 35 35 H 1.09000 * 109.46715 * 300.00115 * 7 6 5 36 36 H 1.08997 * 109.47022 * 180.02562 * 7 6 5 37 37 H 1.08995 * 109.47474 * 24.62352 * 13 12 10 38 38 H 1.09002 * 109.47360 * 144.62580 * 13 12 10 39 39 H 0.96997 * 119.99921 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46722 * 33.23257 * 22 12 10 41 41 H 1.08999 * 109.47224 * 153.22716 * 22 12 10 42 42 H 1.08992 * 109.46943 * 180.02562 * 27 8 7 43 43 H 1.09004 * 109.46959 * 299.99873 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 2.8406 3.1688 1.4425 7 6 4.1893 3.1260 0.7214 8 6 3.9819 2.6600 -0.7211 9 1 4.9427 2.6299 -1.2349 10 6 3.0627 3.6198 -1.4317 11 8 1.9153 3.3019 -1.6628 12 7 3.5156 4.8313 -1.8103 13 6 4.9288 5.1737 -1.6318 14 6 5.1046 5.9208 -0.3348 15 1 4.2492 6.1209 0.2933 16 6 6.3573 6.3497 0.0492 17 7 7.3990 6.1065 -0.7159 18 14 6.5752 7.2765 1.6565 19 1 5.2581 7.4206 2.3272 20 1 7.5015 6.5239 2.5402 21 1 7.1391 8.6220 1.3796 22 6 2.5947 5.8060 -2.4007 23 6 2.5045 5.5732 -3.9101 24 9 2.1388 4.2454 -4.1563 25 9 1.5443 6.4307 -4.4577 26 9 3.7483 5.8306 -4.4968 27 6 3.3589 1.2626 -0.7211 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.8828 1.0774 1.9564 32 1 1.2568 1.8014 1.9563 33 1 2.9879 3.5009 2.4701 34 1 2.1756 3.8630 0.9285 35 1 4.8541 2.4318 1.2355 36 1 4.6333 4.1215 0.7218 37 1 5.5237 4.2607 -1.6087 38 1 5.2581 5.8011 -2.4601 39 1 8.2803 6.4086 -0.4458 40 1 1.6068 5.6884 -1.9553 41 1 2.9616 6.8144 -2.2097 42 1 3.2116 0.9305 -1.7487 43 1 4.0239 0.5684 -0.2071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341334025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:29 Heat of formation + Delta-G solvation = -248.862336 kcal Electronic energy + Delta-G solvation = -30343.177902 eV Core-core repulsion = 25780.009336 eV Total energy + Delta-G solvation = -4563.168566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.65380 -47.21941 -47.08629 -40.30844 -38.00381 -35.77317 -35.37619 -32.83520 -30.98372 -29.94784 -28.89168 -27.13652 -26.19195 -23.83323 -23.20753 -22.15683 -21.87935 -20.38215 -18.52666 -18.08151 -17.91672 -17.35703 -16.55800 -16.38167 -15.87129 -15.45153 -15.34591 -14.83051 -14.48140 -14.27364 -14.09299 -14.01978 -13.83204 -13.59571 -13.31213 -13.28349 -13.25836 -12.94897 -12.68437 -12.50967 -12.15194 -11.97115 -11.90608 -11.79394 -11.60764 -11.49598 -11.26013 -11.07852 -10.87760 -10.56776 -10.53902 -10.28609 -10.08345 -10.00949 -9.79993 -9.14809 -8.81363 -8.64081 -8.11829 -6.33025 -4.39645 2.92269 3.13083 3.21499 3.23619 3.31451 3.52168 4.03480 4.19466 4.29366 4.45994 4.69220 4.99542 5.04619 5.10223 5.21799 5.42729 5.45349 5.49945 5.54958 5.66911 5.67887 5.70409 5.77676 5.80586 5.92161 5.99288 6.03472 6.26296 6.31971 6.36407 6.48976 6.54914 6.64803 6.74251 7.00774 7.11073 7.23994 7.54697 7.59722 7.85730 8.01359 8.59566 8.74344 9.26042 10.73703 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.006589 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.045063 B = 4248.464812 C = 6543.447570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.394 6.394 3 C 0.066 3.934 4 H 0.109 0.891 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.133 4.133 8 C -0.093 4.093 9 H 0.102 0.898 10 C 0.528 3.472 11 O -0.552 6.552 12 N -0.594 5.594 13 C 0.231 3.769 14 C -0.541 4.541 15 H 0.067 0.933 16 C 0.069 3.931 17 N -0.883 5.883 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.083 3.917 23 C 0.430 3.570 24 F -0.177 7.177 25 F -0.192 7.192 26 F -0.182 7.182 27 C -0.093 4.093 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.124 0.876 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.267 0.733 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 -4.388 0.249 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.313 6.313 3 C 0.010 3.990 4 H 0.126 0.874 5 C -0.174 4.174 6 C -0.152 4.152 7 C -0.170 4.170 8 C -0.114 4.114 9 H 0.120 0.880 10 C 0.318 3.682 11 O -0.432 6.432 12 N -0.324 5.324 13 C 0.112 3.888 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.520 5.520 18 Si 0.721 3.279 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.044 4.044 23 C 0.374 3.626 24 F -0.158 7.158 25 F -0.173 7.173 26 F -0.164 7.164 27 C -0.131 4.131 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.511 -4.699 0.086 9.722 hybrid contribution 0.167 0.786 0.580 0.991 sum -8.343 -3.914 0.665 9.239 Atomic orbital electron populations 1.22665 0.81994 1.01637 0.99819 1.87802 1.18975 1.29389 1.95114 1.22819 0.96362 0.84564 0.95271 0.87408 1.22026 1.00384 0.97510 0.97520 1.21465 0.97270 0.95925 1.00512 1.21964 0.97092 1.06345 0.91587 1.21209 0.99055 0.92930 0.98241 0.88022 1.20730 0.88072 0.82095 0.77332 1.90465 1.19863 1.76273 1.56637 1.48212 1.12182 1.12837 1.59174 1.19714 0.73413 0.97780 0.97904 1.21387 0.93992 1.37083 1.05422 0.91482 1.24933 0.95694 0.95565 0.97315 1.69924 0.99567 1.45245 1.37260 0.86503 0.78517 0.79702 0.83200 1.19504 1.20671 1.20800 1.22389 0.99012 0.97389 0.85590 1.21590 0.73296 0.74161 0.93553 1.93210 1.91473 1.35591 1.95564 1.93135 1.64991 1.70993 1.88211 1.93191 1.42682 1.93798 1.86680 1.21372 0.95517 0.95402 1.00840 0.90492 0.94662 0.94099 0.91945 0.92860 0.91987 0.92207 0.91767 0.85832 0.93404 0.94010 0.92306 0.87012 0.85730 0.91575 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.82 101.05 1.09 1.55 16 2 O -0.39 -6.28 10.35 -35.23 -0.36 -6.64 16 3 C 0.07 1.08 2.32 -26.73 -0.06 1.01 16 4 H 0.11 1.94 4.69 -51.93 -0.24 1.70 16 5 C -0.14 -2.04 5.54 -26.73 -0.15 -2.18 16 6 C -0.11 -1.79 5.70 -26.73 -0.15 -1.94 16 7 C -0.13 -2.24 5.35 -26.73 -0.14 -2.38 16 8 C -0.09 -1.60 2.23 -91.77 -0.21 -1.81 16 9 H 0.10 1.77 6.45 -51.93 -0.34 1.43 16 10 C 0.53 9.84 5.08 -10.99 -0.06 9.78 16 11 O -0.55 -10.83 11.75 5.56 0.07 -10.76 16 12 N -0.59 -11.17 2.41 -175.06 -0.42 -11.60 16 13 C 0.23 4.92 4.77 -5.19 -0.02 4.89 16 14 C -0.54 -12.28 6.61 -34.44 -0.23 -12.51 16 15 H 0.07 1.53 7.64 -52.49 -0.40 1.12 16 16 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.88 -22.52 13.29 55.43 0.74 -21.79 16 18 Si 0.89 18.88 29.54 -169.99 -5.02 13.86 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.08 1.38 5.45 -4.04 -0.02 1.36 16 23 C 0.43 7.25 3.30 37.16 0.12 7.38 16 24 F -0.18 -3.28 15.55 2.25 0.04 -3.25 16 25 F -0.19 -3.00 17.32 2.25 0.04 -2.96 16 26 F -0.18 -3.29 16.73 2.25 0.04 -3.25 16 27 C -0.09 -1.51 4.87 -26.73 -0.13 -1.64 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.41 7.87 -51.93 -0.41 0.00 16 30 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.74 7.87 -51.93 -0.41 0.34 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.02 7.18 -51.93 -0.37 0.64 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.12 2.39 4.41 -51.93 -0.23 2.16 16 37 H 0.05 1.06 5.91 -51.93 -0.31 0.76 16 38 H 0.04 0.96 7.55 -51.93 -0.39 0.57 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.11 1.73 7.60 -51.93 -0.39 1.33 16 41 H 0.12 1.92 8.05 -51.93 -0.42 1.50 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -25.74 346.22 -5.73 -31.47 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.00 Total: 4.62 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.05 Total: 5.08 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.32 Total: -33.38 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.30 Total: -17.40 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 0.11 Total: -9.46 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -25.74 -5.73 -31.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341334025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.390 kcal (2) G-P(sol) polarization free energy of solvation -25.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds