Wall clock time and date at job start Tue Mar 31 2020 13:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00315 * 2 1 4 4 C 1.38388 * 110.99764 * 123.96091 * 2 1 3 5 5 N 1.32912 * 120.77538 * 359.97438 * 4 2 1 6 6 C 1.32038 * 121.18940 * 179.97438 * 5 4 2 7 7 N 1.31650 * 122.46873 * 0.02562 * 6 5 4 8 8 C 1.32892 * 120.63846 * 359.97438 * 7 6 5 9 9 C 1.40516 * 120.77195 * 179.97438 * 4 2 1 10 10 N 1.35467 * 134.69260 * 0.03968 * 9 4 2 11 11 C 1.30141 * 109.44222 * 179.97438 * 10 9 4 12 12 N 1.36312 * 109.97899 * 0.02562 * 11 10 9 13 13 C 1.46493 * 126.27909 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47131 * 265.00208 * 13 12 11 15 15 C 1.38637 * 119.74847 * 269.72531 * 14 13 12 16 16 C 1.37614 * 120.24827 * 179.72149 * 15 14 13 17 17 C 1.40716 * 119.74653 * 0.56998 * 16 15 14 18 18 C 1.41386 * 120.24941 * 179.68283 * 17 16 15 19 19 H 1.08001 * 120.00797 * 155.31355 * 18 17 16 20 20 C 1.39956 * 119.99894 * 335.31263 * 18 17 16 21 21 N 1.30826 * 119.99573 * 342.23202 * 20 18 17 22 22 Si 1.86802 * 120.00053 * 162.23046 * 20 18 17 23 23 H 1.48502 * 109.46820 * 94.66463 * 22 20 18 24 24 H 1.48493 * 109.47049 * 214.66521 * 22 20 18 25 25 H 1.48501 * 109.47087 * 334.66730 * 22 20 18 26 26 C 1.40721 * 119.50753 * 359.70823 * 17 16 15 27 27 C 1.37621 * 119.74802 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.46745 * 296.04455 * 1 2 3 29 29 H 1.08997 * 109.47030 * 56.04181 * 1 2 3 30 30 H 1.09004 * 109.47434 * 176.04292 * 1 2 3 31 31 H 1.08999 * 109.47016 * 183.95366 * 3 2 1 32 32 H 1.08998 * 109.47159 * 303.95513 * 3 2 1 33 33 H 1.09006 * 109.46598 * 63.95732 * 3 2 1 34 34 H 1.08008 * 118.76569 * 179.72338 * 6 5 4 35 35 H 1.08004 * 125.00772 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47365 * 25.00035 * 13 12 11 37 37 H 1.09001 * 109.47752 * 145.00198 * 13 12 11 38 38 H 1.08001 * 119.87021 * 359.97438 * 15 14 13 39 39 H 1.07996 * 120.12998 * 180.27755 * 16 15 14 40 40 H 0.97004 * 119.99383 * 180.02562 * 21 20 18 41 41 H 1.07999 * 120.12553 * 180.02562 * 26 17 16 42 42 H 1.07995 * 119.87487 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9649 -0.7217 1.0716 5 7 1.1424 -1.3046 1.9379 6 6 1.6067 -1.9955 2.9628 7 7 2.8949 -2.1474 3.1874 8 6 3.7931 -1.6007 2.3748 9 6 3.3496 -0.8554 1.2692 10 7 4.4520 -0.4156 0.6162 11 6 5.5178 -0.8330 1.2356 12 7 5.1639 -1.5690 2.3270 13 6 6.0794 -2.2086 3.2751 14 6 6.2963 -3.6447 2.8729 15 6 5.4628 -4.6328 3.3738 16 6 5.6481 -5.9467 3.0088 17 6 6.6958 -6.2871 2.1333 18 6 6.8999 -7.6345 1.7566 19 1 7.3997 -7.8658 0.8276 20 6 6.4542 -8.6686 2.5877 21 7 6.1722 -8.4245 3.8417 22 14 6.2620 -10.3973 1.9065 23 1 7.4957 -11.1772 2.1804 24 1 5.1031 -11.0596 2.5570 25 1 6.0347 -10.3293 0.4406 26 6 7.5392 -5.2765 1.6357 27 6 7.3312 -3.9683 2.0090 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8722 0.9234 34 1 0.9031 -2.4491 3.6453 35 1 6.5329 -0.6266 0.9299 36 1 7.0337 -1.6819 3.2705 37 1 5.6494 -2.1727 4.2761 38 1 4.6626 -4.3699 4.0497 39 1 4.9949 -6.7143 3.3967 40 1 5.8637 -9.1413 4.4178 41 1 8.3461 -5.5264 0.9628 42 1 7.9775 -3.1911 1.6287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342552587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:05 Heat of formation + Delta-G solvation = 134.534199 kcal Electronic energy + Delta-G solvation = -26311.683555 eV Core-core repulsion = 22678.891473 eV Total energy + Delta-G solvation = -3632.792082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38896 -39.52877 -37.72547 -37.37368 -34.64691 -33.36066 -32.36879 -30.29558 -29.77337 -29.40131 -27.90968 -27.07595 -25.56519 -24.16124 -23.44063 -22.63142 -21.08159 -20.74042 -19.90428 -18.00042 -17.86975 -17.43392 -16.62695 -16.13685 -15.47421 -15.16788 -15.14855 -14.63384 -14.27687 -14.09983 -13.95367 -13.89612 -13.63249 -13.01198 -12.63098 -12.47225 -12.28470 -12.11885 -12.05169 -11.83602 -11.72431 -11.42958 -11.37049 -11.15088 -11.06343 -10.76392 -10.58705 -10.22289 -9.89542 -9.53718 -9.36159 -9.25760 -8.98158 -8.91244 -7.96265 -7.59946 -7.51230 -6.90745 -4.50606 0.83354 1.44582 2.30528 2.80945 2.92019 2.96590 3.00486 3.04919 3.16508 3.36983 3.83054 3.97502 4.18776 4.31439 4.40702 4.57576 4.85544 4.99889 5.11264 5.16484 5.18488 5.34923 5.46347 5.52559 5.68193 5.77835 5.80251 5.81585 5.95917 6.00889 6.13577 6.30049 6.44711 6.58810 6.83934 6.88894 6.93399 7.02124 7.13428 7.20907 7.37901 7.47524 7.67365 7.83697 7.92306 7.95107 8.15120 8.35000 8.50608 8.74581 8.82556 10.03051 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.003145 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.759330 B = 8899.944562 C = 9534.028531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.472 5.472 3 C 0.029 3.971 4 C 0.416 3.584 5 N -0.571 5.571 6 C 0.330 3.670 7 N -0.522 5.522 8 C 0.293 3.707 9 C -0.066 4.066 10 N -0.475 5.475 11 C 0.264 3.736 12 N -0.454 5.454 13 C 0.172 3.828 14 C -0.258 4.258 15 C -0.068 4.068 16 C -0.170 4.170 17 C 0.120 3.880 18 C -0.456 4.456 19 H 0.080 0.920 20 C 0.076 3.924 21 N -0.784 5.784 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.231 4.231 27 C -0.068 4.068 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.200 0.800 35 H 0.219 0.781 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.283 0.717 41 H 0.093 0.907 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 14.441 -1.997 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.188 5.188 3 C -0.117 4.117 4 C 0.167 3.833 5 N -0.296 5.296 6 C 0.038 3.962 7 N -0.243 5.243 8 C 0.050 3.950 9 C -0.193 4.193 10 N -0.194 5.194 11 C -0.023 4.023 12 N -0.144 5.144 13 C 0.054 3.946 14 C -0.261 4.261 15 C -0.087 4.087 16 C -0.190 4.190 17 C 0.117 3.883 18 C -0.485 4.485 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.408 5.408 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.183 1.183 26 C -0.251 4.251 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.217 0.783 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.356 14.144 -2.212 15.663 hybrid contribution 0.400 -0.938 0.541 1.154 sum -5.956 13.206 -1.670 14.583 Atomic orbital electron populations 1.22322 0.84131 1.03790 1.01064 1.58649 1.10553 1.14660 1.34955 1.22566 1.03356 0.84670 1.01079 1.19281 0.86172 0.91314 0.86519 1.68341 1.38405 1.16872 1.05951 1.24446 0.88570 0.91252 0.91972 1.67228 1.01838 1.23686 1.31508 1.18855 0.86154 0.96214 0.93776 1.19736 0.93822 1.07214 0.98516 1.70280 0.96013 1.25374 1.27726 1.25433 1.00040 0.92266 0.84517 1.45978 1.03381 1.40906 1.24092 1.20638 0.91128 0.92259 0.90605 1.18952 1.04533 0.91887 1.10678 1.20580 0.96828 0.93276 0.98041 1.21295 0.99835 0.94471 1.03377 1.17689 0.88797 0.92714 0.89113 1.19685 1.32812 0.90450 1.05522 0.90215 1.25977 0.92460 1.01853 0.94083 1.69823 1.31055 1.35225 1.04693 0.86283 0.78833 0.80980 0.80633 1.19395 1.19846 1.18293 1.20939 1.02560 0.93018 1.08539 1.20326 0.96144 0.95610 0.96578 0.93543 0.91050 0.90204 0.88469 0.90132 0.94730 0.78340 0.76501 0.89290 0.89519 0.88882 0.86455 0.90599 0.88836 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 8.77 60.06 0.53 0.89 16 2 N -0.47 -6.38 5.04 -188.57 -0.95 -7.33 16 3 C 0.03 0.32 9.30 60.06 0.56 0.88 16 4 C 0.42 6.65 6.44 -154.65 -1.00 5.65 16 5 N -0.57 -8.76 8.88 -13.61 -0.12 -8.88 16 6 C 0.33 4.98 12.25 -92.07 -1.13 3.85 16 7 N -0.52 -9.22 10.47 -13.90 -0.15 -9.36 16 8 C 0.29 5.28 8.05 -155.80 -1.25 4.03 16 9 C -0.07 -1.14 6.59 -84.54 -0.56 -1.70 16 10 N -0.47 -7.61 9.89 -11.85 -0.12 -7.73 16 11 C 0.26 3.76 12.51 -89.50 -1.12 2.64 16 12 N -0.45 -7.39 2.77 -118.91 -0.33 -7.72 16 13 C 0.17 2.74 6.28 -5.19 -0.03 2.71 16 14 C -0.26 -5.26 5.49 -104.33 -0.57 -5.83 16 15 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 16 C -0.17 -4.39 8.70 -38.87 -0.34 -4.72 16 17 C 0.12 3.13 5.57 -106.83 -0.60 2.53 16 18 C -0.46 -11.87 9.05 -37.74 -0.34 -12.21 16 19 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 20 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 21 N -0.78 -19.80 10.97 55.55 0.61 -19.19 16 22 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 26 C -0.23 -5.46 9.80 -38.87 -0.38 -5.84 16 27 C -0.07 -1.40 9.67 -39.66 -0.38 -1.79 16 28 H 0.05 0.48 7.97 -51.93 -0.41 0.07 16 29 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 30 H 0.08 0.92 7.97 -51.93 -0.41 0.50 16 31 H 0.10 1.20 6.38 -51.93 -0.33 0.87 16 32 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.20 2.23 8.06 -52.48 -0.42 1.80 16 35 H 0.22 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 38 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.09 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -30.51 357.70 -13.03 -43.54 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.25 Total: 7.13 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -7.09 Total: -9.10 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -1.05 Total: -60.23 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.51 -13.03 -43.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342552587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.076 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds