Wall clock time and date at job start Tue Mar 31 2020 13:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34706 * 116.99898 * 2 1 4 4 O 1.21474 * 120.00025 * 359.97438 * 3 2 1 5 5 C 1.47743 * 119.99789 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.12456 * 359.97438 * 5 3 2 7 7 C 1.37943 * 119.96333 * 180.02562 * 6 5 3 8 8 C 1.38298 * 120.21135 * 359.72351 * 7 6 5 9 9 C 1.38825 * 120.24721 * 0.55361 * 8 7 6 10 10 O 1.35913 * 119.98208 * 179.71933 * 9 8 7 11 11 C 1.42903 * 116.99828 * 359.72917 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99820 * 12 11 10 14 14 O 1.42905 * 109.46848 * 294.99599 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99924 * 12 11 10 16 16 N 1.46903 * 109.47041 * 184.99509 * 15 12 11 17 17 C 1.46904 * 110.99719 * 66.04855 * 16 15 12 18 18 C 1.46894 * 111.00142 * 189.99844 * 16 15 12 19 19 C 1.50705 * 109.47253 * 170.00380 * 18 16 15 20 20 H 1.07998 * 119.99533 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00310 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99800 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47360 * 89.99676 * 23 21 19 25 25 H 1.48496 * 109.47242 * 209.99766 * 23 21 19 26 26 H 1.48498 * 109.47100 * 329.99971 * 23 21 19 27 27 C 1.38485 * 120.03400 * 359.44944 * 9 8 7 28 28 H 1.09004 * 109.47000 * 300.00254 * 1 2 3 29 29 H 1.09000 * 109.47435 * 59.99774 * 1 2 3 30 30 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.01605 * 0.02562 * 6 5 3 32 32 H 1.08004 * 119.89872 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.88193 * 180.27182 * 8 7 6 34 34 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 35 35 H 1.09001 * 109.46938 * 299.99773 * 11 10 9 36 36 H 0.96702 * 113.99974 * 300.00156 * 14 12 11 37 37 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 38 38 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 39 39 H 1.08996 * 109.47418 * 59.99912 * 17 16 15 40 40 H 1.09002 * 109.46997 * 180.02562 * 17 16 15 41 41 H 1.09000 * 109.46998 * 299.99753 * 17 16 15 42 42 H 1.08996 * 109.47743 * 290.00303 * 18 16 15 43 43 H 1.09002 * 109.47268 * 50.00352 * 18 16 15 44 44 H 0.97000 * 119.99908 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.10164 * 180.25362 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3021 0.1080 -0.0006 7 6 5.6794 0.1840 -0.0006 8 6 6.3084 1.4157 -0.0063 9 6 5.5584 2.5839 -0.0006 10 8 6.1822 3.7914 -0.0005 11 6 7.6112 3.7835 -0.0006 12 6 8.1291 5.2231 0.0002 13 1 7.6975 5.7641 0.8422 14 8 7.7546 5.8646 -1.2207 15 6 9.6539 5.2164 0.1259 16 7 10.1414 6.5969 0.2469 17 6 9.6897 7.2063 1.5049 18 6 11.6048 6.6505 0.1317 19 6 12.0472 8.0863 0.0137 20 1 11.3144 8.8795 0.0229 21 6 13.3874 8.3871 -0.1070 22 7 14.2797 7.4210 -0.1187 23 14 13.9357 10.1667 -0.2539 24 1 14.1880 10.7204 1.1007 25 1 15.1827 10.2357 -1.0571 26 1 12.8720 10.9588 -0.9221 27 6 4.1751 2.5195 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.8141 -0.8556 -0.0006 32 1 6.2686 -0.7212 -0.0010 33 1 7.3870 1.4690 -0.0108 34 1 7.9717 3.2676 -0.8905 35 1 7.9716 3.2676 0.8894 36 1 8.1045 5.4359 -2.0137 37 1 9.9431 4.6501 1.0112 38 1 10.0895 4.7537 -0.7598 39 1 10.0693 6.6266 2.3463 40 1 10.0641 8.2280 1.5687 41 1 8.6001 7.2166 1.5329 42 1 12.0557 6.2031 1.0175 43 1 11.9200 6.0992 -0.7542 44 1 15.2225 7.6326 -0.2033 45 1 3.5905 3.4276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342804015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:58 Heat of formation + Delta-G solvation = -136.881018 kcal Electronic energy + Delta-G solvation = -26158.873509 eV Core-core repulsion = 22142.417558 eV Total energy + Delta-G solvation = -4016.455951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02727 -40.18537 -38.33626 -37.21948 -36.74635 -35.45649 -32.57746 -31.82162 -31.19452 -29.89203 -28.11902 -27.32835 -26.54044 -24.79628 -23.81817 -22.77722 -21.70192 -20.98315 -20.31627 -18.93334 -17.63886 -16.93450 -16.77216 -16.63232 -16.54621 -16.33165 -16.17192 -15.37299 -15.02975 -14.77543 -14.44282 -14.29587 -13.99168 -13.84770 -13.67651 -13.47536 -13.29901 -12.76759 -12.56191 -12.50547 -12.31080 -11.95644 -11.59406 -11.43995 -11.25341 -11.21905 -11.14159 -10.95657 -10.91901 -10.79579 -10.72047 -10.33638 -10.07311 -9.74543 -9.51815 -9.19890 -8.59887 -8.46784 -7.28663 -6.05875 -4.06921 0.26451 1.02172 2.15971 2.16254 2.92788 3.30992 3.37250 3.38452 3.42618 4.23591 4.34775 4.39788 4.49432 4.58370 4.65233 4.68066 4.77391 4.78628 4.86720 4.89194 5.03892 5.09241 5.14095 5.27258 5.30709 5.34072 5.48124 5.51376 5.77391 5.87599 5.90996 5.93091 5.97171 6.09839 6.17831 6.23763 6.28969 6.72787 7.08608 7.20555 7.26180 7.32934 7.75777 7.88854 8.03537 8.13312 8.49271 9.00944 9.57551 11.05079 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.038568 B = 0.001799 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.813725 B =15564.710511 C =16027.335372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.500 6.500 5 C -0.091 4.091 6 C -0.105 4.105 7 C -0.091 4.091 8 C -0.175 4.175 9 C 0.126 3.874 10 O -0.298 6.298 11 C 0.025 3.975 12 C 0.115 3.885 13 H 0.107 0.893 14 O -0.537 6.537 15 C 0.028 3.972 16 N -0.529 5.529 17 C 0.034 3.966 18 C 0.193 3.807 19 C -0.507 4.507 20 H 0.065 0.935 21 C 0.055 3.945 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 C -0.089 4.089 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.370 0.630 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.010 0.990 40 H 0.077 0.923 41 H 0.048 0.952 42 H -0.009 1.009 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.889 -19.678 0.814 29.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.355 3.645 4 O -0.388 6.388 5 C -0.092 4.092 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.194 4.194 9 C 0.080 3.920 10 O -0.211 6.211 11 C -0.051 4.051 12 C 0.055 3.945 13 H 0.125 0.875 14 O -0.341 6.341 15 C -0.101 4.101 16 N -0.253 5.253 17 C -0.115 4.115 18 C 0.068 3.932 19 C -0.545 4.545 20 H 0.083 0.917 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.108 4.108 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.217 0.783 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.008 0.992 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.501 -18.526 0.818 29.158 hybrid contribution 1.160 -0.189 0.291 1.211 sum -21.341 -18.715 1.109 28.406 Atomic orbital electron populations 1.23316 0.75692 1.03894 1.02837 1.86532 1.23751 1.32464 1.84334 1.21134 0.89010 0.81518 0.72840 1.90864 1.66732 1.36000 1.45238 1.18738 0.88923 0.94143 1.07378 1.21327 0.93834 0.97816 0.99358 1.20957 0.94206 0.97462 0.98303 1.21638 1.00918 0.92316 1.04515 1.18833 0.91742 0.85108 0.96325 1.86207 1.21317 1.25617 1.87914 1.23805 0.78160 1.00949 1.02148 1.21980 0.94023 0.88927 0.89572 0.87485 1.86660 1.76257 1.56424 1.14722 1.22625 0.93303 0.93156 1.01053 1.62011 1.15482 1.13590 1.34206 1.22295 0.98456 1.01114 0.89621 1.19760 0.79578 0.97938 0.95934 1.21164 0.91771 0.92153 1.49447 0.91720 1.24990 0.96641 0.97594 0.95428 1.69956 1.01432 1.31706 1.50891 0.86475 0.78093 0.84738 0.78006 1.20746 1.21259 1.19694 1.20441 0.91746 0.97805 1.00768 0.91682 0.91661 0.87822 0.84344 0.84702 0.84577 0.91352 0.91020 0.78335 0.94974 0.90737 0.97133 0.90442 0.93350 0.99162 0.95264 0.92931 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.04 9.81 -40.51 -0.40 -3.43 16 3 C 0.51 5.49 7.90 34.62 0.27 5.76 16 4 O -0.50 -6.67 16.14 -19.25 -0.31 -6.98 16 5 C -0.09 -0.92 5.87 -105.00 -0.62 -1.54 16 6 C -0.10 -0.84 9.61 -39.16 -0.38 -1.21 16 7 C -0.09 -0.67 10.02 -39.67 -0.40 -1.07 16 8 C -0.18 -1.54 9.04 -39.34 -0.36 -1.90 16 9 C 0.13 1.40 6.68 -39.27 -0.26 1.13 16 10 O -0.30 -3.74 10.10 -24.32 -0.25 -3.99 16 11 C 0.03 0.28 4.37 37.16 0.16 0.44 16 12 C 0.12 1.60 3.20 -26.73 -0.09 1.52 16 13 H 0.11 1.59 6.34 -51.93 -0.33 1.26 16 14 O -0.54 -8.32 13.25 -40.09 -0.53 -8.85 16 15 C 0.03 0.45 4.60 -3.82 -0.02 0.44 16 16 N -0.53 -11.11 4.70 -244.37 -1.15 -12.26 16 17 C 0.03 0.65 9.14 60.07 0.55 1.20 16 18 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 19 C -0.51 -14.17 8.46 -34.44 -0.29 -14.46 16 20 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 23 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.09 -1.00 9.53 -39.01 -0.37 -1.38 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.14 0.84 7.61 -52.48 -0.40 0.44 16 32 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.14 0.98 6.28 -52.49 -0.33 0.65 16 34 H 0.07 0.62 7.64 -51.93 -0.40 0.23 16 35 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.37 4.47 9.05 45.56 0.41 4.88 16 37 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 41 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 42 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 43 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.15 1.74 7.65 -52.49 -0.40 1.34 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -33.85 380.83 -7.84 -41.68 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.81 Total: 0.68 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.84 Total: -3.45 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.41 Total: -37.97 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -1.48 Total: -23.25 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.85 -7.84 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342804015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.198 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds