Wall clock time and date at job start Tue Mar 31 2020 13:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34706 * 116.99898 * 2 1 4 4 O 1.21474 * 120.00025 * 359.97438 * 3 2 1 5 5 C 1.47743 * 119.99789 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.12456 * 359.97438 * 5 3 2 7 7 C 1.37943 * 119.96333 * 180.02562 * 6 5 3 8 8 C 1.38298 * 120.21135 * 359.72351 * 7 6 5 9 9 C 1.38825 * 120.24721 * 0.55361 * 8 7 6 10 10 O 1.35913 * 119.98208 * 179.71933 * 9 8 7 11 11 C 1.42903 * 116.99828 * 359.72917 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99820 * 12 11 10 14 14 O 1.42905 * 109.46848 * 294.99599 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99924 * 12 11 10 16 16 N 1.46903 * 109.47041 * 184.99509 * 15 12 11 17 17 C 1.46904 * 110.99719 * 66.04855 * 16 15 12 18 18 C 1.46894 * 111.00142 * 189.99844 * 16 15 12 19 19 C 1.50705 * 109.47253 * 170.00380 * 18 16 15 20 20 H 1.07998 * 119.99533 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00310 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99800 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47360 * 89.99676 * 23 21 19 25 25 H 1.48496 * 109.47242 * 209.99766 * 23 21 19 26 26 H 1.48498 * 109.47100 * 329.99971 * 23 21 19 27 27 C 1.38485 * 120.03400 * 359.44944 * 9 8 7 28 28 H 1.09004 * 109.47000 * 300.00254 * 1 2 3 29 29 H 1.09000 * 109.47435 * 59.99774 * 1 2 3 30 30 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.01605 * 0.02562 * 6 5 3 32 32 H 1.08004 * 119.89872 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.88193 * 180.27182 * 8 7 6 34 34 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 35 35 H 1.09001 * 109.46938 * 299.99773 * 11 10 9 36 36 H 0.96702 * 113.99974 * 300.00156 * 14 12 11 37 37 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 38 38 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 39 39 H 1.08996 * 109.47418 * 59.99912 * 17 16 15 40 40 H 1.09002 * 109.46997 * 180.02562 * 17 16 15 41 41 H 1.09000 * 109.46998 * 299.99753 * 17 16 15 42 42 H 1.08996 * 109.47743 * 290.00303 * 18 16 15 43 43 H 1.09002 * 109.47268 * 50.00352 * 18 16 15 44 44 H 0.97000 * 119.99908 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.10164 * 180.25362 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3021 0.1080 -0.0006 7 6 5.6794 0.1840 -0.0006 8 6 6.3084 1.4157 -0.0063 9 6 5.5584 2.5839 -0.0006 10 8 6.1822 3.7914 -0.0005 11 6 7.6112 3.7835 -0.0006 12 6 8.1291 5.2231 0.0002 13 1 7.6975 5.7641 0.8422 14 8 7.7546 5.8646 -1.2207 15 6 9.6539 5.2164 0.1259 16 7 10.1414 6.5969 0.2469 17 6 9.6897 7.2063 1.5049 18 6 11.6048 6.6505 0.1317 19 6 12.0472 8.0863 0.0137 20 1 11.3144 8.8795 0.0229 21 6 13.3874 8.3871 -0.1070 22 7 14.2797 7.4210 -0.1187 23 14 13.9357 10.1667 -0.2539 24 1 14.1880 10.7204 1.1007 25 1 15.1827 10.2357 -1.0571 26 1 12.8720 10.9588 -0.9221 27 6 4.1751 2.5195 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.8141 -0.8556 -0.0006 32 1 6.2686 -0.7212 -0.0010 33 1 7.3870 1.4690 -0.0108 34 1 7.9717 3.2676 -0.8905 35 1 7.9716 3.2676 0.8894 36 1 8.1045 5.4359 -2.0137 37 1 9.9431 4.6501 1.0112 38 1 10.0895 4.7537 -0.7598 39 1 10.0693 6.6266 2.3463 40 1 10.0641 8.2280 1.5687 41 1 8.6001 7.2166 1.5329 42 1 12.0557 6.2031 1.0175 43 1 11.9200 6.0992 -0.7542 44 1 15.2225 7.6326 -0.2033 45 1 3.5905 3.4276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342804015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:57 Heat of formation + Delta-G solvation = -161.305396 kcal Electronic energy + Delta-G solvation = -26159.932629 eV Core-core repulsion = 22142.417558 eV Total energy + Delta-G solvation = -4017.515072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78884 -40.99568 -39.43526 -38.24210 -37.54403 -36.88975 -34.62886 -32.53163 -32.15792 -30.92537 -29.17047 -28.65404 -27.87317 -26.05027 -24.98118 -23.48562 -23.07426 -21.86433 -21.77382 -19.72343 -18.58461 -18.38474 -17.77987 -17.62056 -17.44500 -17.31905 -16.90366 -16.80937 -16.27720 -16.11235 -15.87644 -15.20958 -15.05139 -14.95762 -14.64817 -14.48591 -14.30584 -14.05687 -13.79716 -13.44736 -13.24803 -13.06788 -12.96394 -12.81545 -12.61120 -12.58109 -12.42876 -12.25968 -12.05073 -11.96939 -11.87095 -11.75645 -11.59181 -11.39055 -10.87711 -10.61573 -10.21199 -9.34325 -8.97628 -8.20922 -6.30056 -0.46834 0.33073 1.39171 1.41371 1.42369 1.47567 1.54327 2.08976 2.41184 2.68239 3.11763 3.25902 3.54327 3.58733 3.70950 3.85114 3.92361 3.99509 4.08019 4.14778 4.24186 4.30501 4.31269 4.31964 4.39968 4.44184 4.52237 4.69307 4.70494 4.71468 4.80926 4.99475 5.08454 5.10093 5.17717 5.18112 5.24682 5.31245 5.31793 5.58155 5.65040 6.04801 6.29630 6.31998 6.56730 6.62450 6.85446 6.91846 7.39521 8.89764 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.038568 B = 0.001799 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.813725 B =15564.710511 C =16027.335372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.083 4.083 8 C -0.170 4.170 9 C 0.108 3.892 10 O -0.322 6.322 11 C 0.032 3.968 12 C 0.124 3.876 13 H 0.096 0.904 14 O -0.560 6.560 15 C 0.029 3.971 16 N -0.543 5.543 17 C 0.037 3.963 18 C 0.208 3.792 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.004 3.996 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.268 1.268 27 C -0.110 4.110 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.383 0.617 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.016 0.984 40 H 0.055 0.945 41 H 0.073 0.927 42 H -0.034 1.034 43 H 0.009 0.991 44 H 0.265 0.735 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.054 -21.646 0.819 30.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.358 3.642 4 O -0.429 6.429 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.189 4.189 9 C 0.062 3.938 10 O -0.236 6.236 11 C -0.043 4.043 12 C 0.064 3.936 13 H 0.113 0.887 14 O -0.366 6.366 15 C -0.100 4.100 16 N -0.267 5.267 17 C -0.111 4.111 18 C 0.082 3.918 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.194 4.194 22 N -0.573 5.573 23 Si 0.792 3.208 24 H -0.199 1.199 25 H -0.206 1.206 26 H -0.193 1.193 27 C -0.129 4.129 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.174 0.826 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.232 0.768 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.091 0.909 42 H -0.016 1.016 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.688 -20.528 0.822 30.608 hybrid contribution 1.121 0.302 0.288 1.196 sum -21.567 -20.226 1.110 29.589 Atomic orbital electron populations 1.23635 0.74067 1.06153 1.02641 1.86522 1.25338 1.31082 1.83692 1.21349 0.89378 0.81616 0.71905 1.90841 1.67543 1.37268 1.47209 1.18819 0.88809 0.94586 1.08389 1.21646 0.94252 0.97807 0.97462 1.21388 0.94084 0.98225 0.96370 1.21923 1.01844 0.91882 1.03218 1.18937 0.91630 0.85411 0.97793 1.86140 1.21968 1.26937 1.88567 1.23673 0.77733 0.98744 1.04166 1.21797 0.92158 0.90920 0.88748 0.88663 1.86616 1.76617 1.57604 1.15812 1.22692 0.94872 0.90511 1.01892 1.61880 1.12528 1.17005 1.35279 1.22255 0.99859 0.99789 0.89187 1.19403 0.82425 0.96255 0.93747 1.21479 0.92111 0.93267 1.49516 0.92291 1.25852 0.96709 1.01974 0.94905 1.70062 1.01806 1.33835 1.51573 0.85418 0.77669 0.79442 0.78306 1.19852 1.20604 1.19283 1.20389 0.92205 0.97767 1.02557 0.91930 0.91930 0.84287 0.82002 0.81082 0.82586 0.89198 0.89048 0.76804 0.93671 0.90126 0.96531 0.92635 0.90851 1.01648 0.97277 0.92667 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.59 9.81 -56.16 -0.55 -6.14 16 3 C 0.51 11.05 7.90 70.34 0.56 11.60 16 4 O -0.54 -15.03 16.14 19.92 0.32 -14.71 16 5 C -0.10 -2.08 5.87 -20.11 -0.12 -2.19 16 6 C -0.09 -1.24 9.61 22.54 0.22 -1.03 16 7 C -0.08 -0.91 10.02 22.21 0.22 -0.69 16 8 C -0.17 -2.50 9.04 22.42 0.20 -2.30 16 9 C 0.11 2.29 6.68 22.47 0.15 2.44 16 10 O -0.32 -7.90 10.10 -87.92 -0.89 -8.79 16 11 C 0.03 0.64 4.37 71.98 0.31 0.95 16 12 C 0.12 3.31 3.20 30.60 0.10 3.41 16 13 H 0.10 2.76 6.34 -2.39 -0.02 2.75 16 14 O -0.56 -17.05 13.25 -144.34 -1.91 -18.96 16 15 C 0.03 0.91 4.60 86.30 0.40 1.31 16 16 N -0.54 -22.86 4.70 -927.05 -4.36 -27.22 16 17 C 0.04 1.44 9.14 127.69 1.17 2.61 16 18 C 0.21 10.83 4.72 85.56 0.40 11.23 16 19 C -0.53 -29.82 8.46 25.60 0.22 -29.60 16 20 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 23 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.11 -2.56 9.53 22.64 0.22 -2.34 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.16 1.36 7.61 -2.91 -0.02 1.34 16 32 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.16 1.63 6.28 -2.91 -0.02 1.61 16 34 H 0.09 1.38 7.64 -2.39 -0.02 1.36 16 35 H 0.09 1.44 7.67 -2.39 -0.02 1.42 16 36 H 0.38 8.96 9.05 -74.06 -0.67 8.29 16 37 H 0.05 1.31 8.12 -2.39 -0.02 1.30 16 38 H 0.08 2.41 7.93 -2.39 -0.02 2.39 16 39 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 2.35 6.76 -2.39 -0.02 2.34 16 41 H 0.07 2.44 6.37 -2.39 -0.02 2.42 16 42 H -0.03 -1.91 8.12 -2.39 -0.02 -1.93 16 43 H 0.01 0.50 7.93 -2.39 -0.02 0.49 16 44 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.13 3.31 7.65 -2.91 -0.02 3.28 16 Total: -1.00 -75.12 380.83 0.96 -74.15 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.34 Total: 12.74 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.70 Total: -2.45 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -4.07 Total: -82.25 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -3.03 Total: -48.60 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -75.12 0.96 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342804015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.151 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds