Wall clock time and date at job start Tue Mar 31 2020 13:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34711 * 116.99989 * 2 1 4 4 O 1.21464 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.47744 * 119.99888 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.12075 * 359.97438 * 5 3 2 7 7 C 1.37956 * 119.95692 * 180.02562 * 6 5 3 8 8 C 1.38298 * 120.21094 * 359.72302 * 7 6 5 9 9 C 1.38813 * 120.24677 * 0.55330 * 8 7 6 10 10 O 1.35912 * 119.98064 * 179.72164 * 9 8 7 11 11 C 1.42905 * 117.00181 * 359.72857 * 10 9 8 12 12 C 1.52992 * 109.47641 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.00539 * 12 11 10 14 14 O 1.42905 * 109.46980 * 64.99667 * 12 11 10 15 15 C 1.52997 * 109.47482 * 184.99974 * 12 11 10 16 16 N 1.46899 * 109.47254 * 179.97438 * 15 12 11 17 17 C 1.46902 * 111.00255 * 293.95367 * 16 15 12 18 18 C 1.46901 * 111.00103 * 169.99667 * 16 15 12 19 19 C 1.50696 * 109.47399 * 190.00043 * 18 16 15 20 20 H 1.08005 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00189 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47047 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47167 * 119.99895 * 23 21 19 26 26 H 1.48495 * 109.47058 * 239.99959 * 23 21 19 27 27 C 1.38479 * 120.03731 * 359.45076 * 9 8 7 28 28 H 1.09004 * 109.47068 * 299.99821 * 1 2 3 29 29 H 1.08996 * 109.46991 * 60.00137 * 1 2 3 30 30 H 1.08999 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.02780 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.89393 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.87495 * 180.27651 * 8 7 6 34 34 H 1.09001 * 109.46938 * 59.99280 * 11 10 9 35 35 H 1.09004 * 109.46753 * 300.00350 * 11 10 9 36 36 H 0.96696 * 114.00036 * 60.00352 * 14 12 11 37 37 H 1.09002 * 109.47153 * 59.99783 * 15 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 15 12 11 39 39 H 1.09005 * 109.46528 * 59.99744 * 17 16 15 40 40 H 1.09000 * 109.46785 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47044 * 300.00388 * 17 16 15 42 42 H 1.08998 * 109.47407 * 310.00536 * 18 16 15 43 43 H 1.09007 * 109.46608 * 69.99971 * 18 16 15 44 44 H 0.96994 * 119.99598 * 179.97438 * 22 21 19 45 45 H 1.08006 * 120.10341 * 180.24966 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3021 0.1080 -0.0006 7 6 5.6795 0.1841 -0.0006 8 6 6.3084 1.4158 -0.0064 9 6 5.5584 2.5839 -0.0006 10 8 6.1821 3.7914 -0.0006 11 6 7.6112 3.7836 -0.0007 12 6 8.1292 5.2232 0.0000 13 1 7.6974 5.7650 -0.8415 14 8 7.7546 5.8636 1.2214 15 6 9.6539 5.2167 -0.1258 16 7 10.1512 6.5989 -0.1258 17 6 9.7047 7.3191 -1.3258 18 6 11.6150 6.6318 -0.0062 19 6 12.0675 8.0486 0.2368 20 1 11.3403 8.8449 0.2968 21 6 13.4097 8.3282 0.3824 22 7 14.2951 7.3585 0.3098 23 14 13.9705 10.0843 0.6843 24 1 12.7880 10.9817 0.7235 25 1 14.6915 10.1578 1.9804 26 1 14.8778 10.5095 -0.4117 27 6 4.1751 2.5195 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8142 -0.8556 -0.0006 32 1 6.2686 -0.7211 -0.0010 33 1 7.3871 1.4690 -0.0108 34 1 7.9716 3.2677 -0.8906 35 1 7.9716 3.2677 0.8893 36 1 8.1044 5.4342 2.0140 37 1 9.9396 4.7281 -1.0574 38 1 10.0856 4.6748 0.7158 39 1 8.6152 7.3395 -1.3528 40 1 10.0865 8.3397 -1.3000 41 1 10.0807 6.8124 -2.2145 42 1 11.9256 6.0030 0.8282 43 1 12.0632 6.2602 -0.9278 44 1 15.2393 7.5553 0.4118 45 1 3.5905 3.4277 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342804016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:00 Heat of formation + Delta-G solvation = -137.011772 kcal Electronic energy + Delta-G solvation = -26162.972985 eV Core-core repulsion = 22146.511364 eV Total energy + Delta-G solvation = -4016.461621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02667 -40.18317 -38.33005 -37.21770 -36.74636 -35.42774 -32.57232 -31.82003 -31.19595 -29.89477 -28.11797 -27.33156 -26.52141 -24.79323 -23.81949 -22.77548 -21.69946 -20.97846 -20.30299 -18.93204 -17.63782 -16.93414 -16.77007 -16.62456 -16.54542 -16.33034 -16.16694 -15.35923 -15.01734 -14.79970 -14.43779 -14.26488 -13.98942 -13.84958 -13.66468 -13.48459 -13.29896 -12.75804 -12.56452 -12.50184 -12.30870 -11.95963 -11.59717 -11.43877 -11.25129 -11.21865 -11.14860 -10.93975 -10.92222 -10.79292 -10.68561 -10.34576 -10.05860 -9.74084 -9.51653 -9.18849 -8.59699 -8.47073 -7.28225 -6.06106 -4.07036 0.26644 1.02340 2.16138 2.16355 2.92981 3.30026 3.37572 3.38638 3.43371 4.23743 4.35078 4.39788 4.50275 4.58682 4.65844 4.68141 4.77474 4.78840 4.86976 4.89831 5.04028 5.09051 5.14174 5.27381 5.31058 5.34786 5.48505 5.51628 5.77573 5.87725 5.92213 5.93286 5.97339 6.10868 6.17801 6.23865 6.29848 6.73716 7.08856 7.20784 7.26540 7.33031 7.76080 7.90423 8.03978 8.13580 8.49467 9.01293 9.57545 11.04925 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.001800 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.289518 B =15553.504976 C =16018.969417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.500 6.500 5 C -0.091 4.091 6 C -0.105 4.105 7 C -0.091 4.091 8 C -0.175 4.175 9 C 0.126 3.874 10 O -0.298 6.298 11 C 0.025 3.975 12 C 0.116 3.884 13 H 0.106 0.894 14 O -0.536 6.536 15 C 0.027 3.973 16 N -0.528 5.528 17 C 0.034 3.966 18 C 0.192 3.808 19 C -0.506 4.506 20 H 0.065 0.935 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.285 1.285 27 C -0.089 4.089 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.371 0.629 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.010 0.990 42 H 0.029 0.971 43 H -0.009 1.009 44 H 0.261 0.739 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.968 -19.435 -1.458 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.355 3.645 4 O -0.388 6.388 5 C -0.092 4.092 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.194 4.194 9 C 0.080 3.920 10 O -0.211 6.211 11 C -0.050 4.050 12 C 0.056 3.944 13 H 0.124 0.876 14 O -0.340 6.340 15 C -0.102 4.102 16 N -0.252 5.252 17 C -0.114 4.114 18 C 0.067 3.933 19 C -0.544 4.544 20 H 0.083 0.917 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.108 4.108 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.217 0.783 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.047 0.953 43 H 0.008 0.992 44 H 0.070 0.930 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.583 -18.316 -1.446 29.113 hybrid contribution 1.176 -0.155 -0.246 1.211 sum -21.408 -18.472 -1.692 28.326 Atomic orbital electron populations 1.23316 0.75694 1.03894 1.02834 1.86534 1.23749 1.32466 1.84338 1.21133 0.89010 0.81516 0.72840 1.90860 1.66735 1.36001 1.45235 1.18736 0.88923 0.94144 1.07382 1.21328 0.93835 0.97815 0.99360 1.20961 0.94206 0.97464 0.98299 1.21638 1.00924 0.92316 1.04508 1.18827 0.91739 0.85109 0.96322 1.86206 1.21327 1.25617 1.87914 1.23800 0.78147 1.00951 1.02151 1.21951 0.93974 0.88943 0.89580 0.87647 1.86648 1.76176 1.56430 1.14707 1.22618 0.93321 0.93463 1.00802 1.61998 1.15240 1.09975 1.37998 1.22283 0.98535 1.00476 0.90107 1.19768 0.79613 0.98090 0.95787 1.21204 0.91753 0.93233 1.48252 0.91654 1.24994 0.96683 0.97499 0.95509 1.69965 1.01564 1.31664 1.50803 0.86423 0.78653 0.84547 0.77714 1.19580 1.20999 1.21135 1.20439 0.91748 0.97803 1.00776 0.91668 0.91677 0.87823 0.84345 0.84703 0.84571 0.91029 0.91340 0.78269 0.94950 0.90804 0.93330 0.90478 0.97181 0.95283 0.99169 0.92987 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.04 9.81 -40.52 -0.40 -3.44 16 3 C 0.51 5.49 7.90 34.62 0.27 5.77 16 4 O -0.50 -6.67 16.13 -19.24 -0.31 -6.98 16 5 C -0.09 -0.92 5.87 -105.00 -0.62 -1.54 16 6 C -0.10 -0.84 9.61 -39.16 -0.38 -1.22 16 7 C -0.09 -0.67 10.03 -39.66 -0.40 -1.07 16 8 C -0.18 -1.54 9.03 -39.35 -0.36 -1.90 16 9 C 0.13 1.40 6.68 -39.28 -0.26 1.14 16 10 O -0.30 -3.74 10.10 -24.31 -0.25 -3.99 16 11 C 0.03 0.28 4.37 37.15 0.16 0.44 16 12 C 0.12 1.61 3.12 -26.74 -0.08 1.53 16 13 H 0.11 1.55 6.55 -51.93 -0.34 1.21 16 14 O -0.54 -8.33 13.17 -40.08 -0.53 -8.86 16 15 C 0.03 0.44 4.62 -3.83 -0.02 0.42 16 16 N -0.53 -11.07 4.62 -244.37 -1.13 -12.20 16 17 C 0.03 0.67 9.14 60.07 0.55 1.22 16 18 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 19 C -0.51 -14.13 8.46 -34.44 -0.29 -14.42 16 20 H 0.07 1.83 7.12 -52.48 -0.37 1.46 16 21 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 23 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.09 -1.00 9.53 -39.01 -0.37 -1.38 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.14 0.84 7.61 -52.49 -0.40 0.44 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 0.99 6.28 -52.48 -0.33 0.66 16 34 H 0.07 0.66 7.64 -51.93 -0.40 0.27 16 35 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 36 H 0.37 4.56 9.05 45.56 0.41 4.98 16 37 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.07 1.14 7.93 -51.93 -0.41 0.72 16 39 H 0.05 0.83 6.47 -51.93 -0.34 0.49 16 40 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 43 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 45 H 0.15 1.74 7.65 -52.48 -0.40 1.34 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -33.79 380.92 -7.83 -41.61 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.83 Total: 0.69 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.84 Total: -3.43 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.39 Total: -37.91 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.48 Total: -23.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.79 -7.83 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342804016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.398 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds