Wall clock time and date at job start Tue Mar 31 2020 13:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34711 * 116.99989 * 2 1 4 4 O 1.21464 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.47744 * 119.99888 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.12075 * 359.97438 * 5 3 2 7 7 C 1.37956 * 119.95692 * 180.02562 * 6 5 3 8 8 C 1.38298 * 120.21094 * 359.72302 * 7 6 5 9 9 C 1.38813 * 120.24677 * 0.55330 * 8 7 6 10 10 O 1.35912 * 119.98064 * 179.72164 * 9 8 7 11 11 C 1.42905 * 117.00181 * 359.72857 * 10 9 8 12 12 C 1.52992 * 109.47641 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46862 * 305.00539 * 12 11 10 14 14 O 1.42905 * 109.46980 * 64.99667 * 12 11 10 15 15 C 1.52997 * 109.47482 * 184.99974 * 12 11 10 16 16 N 1.46899 * 109.47254 * 179.97438 * 15 12 11 17 17 C 1.46902 * 111.00255 * 293.95367 * 16 15 12 18 18 C 1.46901 * 111.00103 * 169.99667 * 16 15 12 19 19 C 1.50696 * 109.47399 * 190.00043 * 18 16 15 20 20 H 1.08005 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00189 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47047 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47167 * 119.99895 * 23 21 19 26 26 H 1.48495 * 109.47058 * 239.99959 * 23 21 19 27 27 C 1.38479 * 120.03731 * 359.45076 * 9 8 7 28 28 H 1.09004 * 109.47068 * 299.99821 * 1 2 3 29 29 H 1.08996 * 109.46991 * 60.00137 * 1 2 3 30 30 H 1.08999 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.02780 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.89393 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.87495 * 180.27651 * 8 7 6 34 34 H 1.09001 * 109.46938 * 59.99280 * 11 10 9 35 35 H 1.09004 * 109.46753 * 300.00350 * 11 10 9 36 36 H 0.96696 * 114.00036 * 60.00352 * 14 12 11 37 37 H 1.09002 * 109.47153 * 59.99783 * 15 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 15 12 11 39 39 H 1.09005 * 109.46528 * 59.99744 * 17 16 15 40 40 H 1.09000 * 109.46785 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47044 * 300.00388 * 17 16 15 42 42 H 1.08998 * 109.47407 * 310.00536 * 18 16 15 43 43 H 1.09007 * 109.46608 * 69.99971 * 18 16 15 44 44 H 0.96994 * 119.99598 * 179.97438 * 22 21 19 45 45 H 1.08006 * 120.10341 * 180.24966 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3021 0.1080 -0.0006 7 6 5.6795 0.1841 -0.0006 8 6 6.3084 1.4158 -0.0064 9 6 5.5584 2.5839 -0.0006 10 8 6.1821 3.7914 -0.0006 11 6 7.6112 3.7836 -0.0007 12 6 8.1292 5.2232 0.0000 13 1 7.6974 5.7650 -0.8415 14 8 7.7546 5.8636 1.2214 15 6 9.6539 5.2167 -0.1258 16 7 10.1512 6.5989 -0.1258 17 6 9.7047 7.3191 -1.3258 18 6 11.6150 6.6318 -0.0062 19 6 12.0675 8.0486 0.2368 20 1 11.3403 8.8449 0.2968 21 6 13.4097 8.3282 0.3824 22 7 14.2951 7.3585 0.3098 23 14 13.9705 10.0843 0.6843 24 1 12.7880 10.9817 0.7235 25 1 14.6915 10.1578 1.9804 26 1 14.8778 10.5095 -0.4117 27 6 4.1751 2.5195 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8142 -0.8556 -0.0006 32 1 6.2686 -0.7211 -0.0010 33 1 7.3871 1.4690 -0.0108 34 1 7.9716 3.2677 -0.8906 35 1 7.9716 3.2677 0.8893 36 1 8.1044 5.4342 2.0140 37 1 9.9396 4.7281 -1.0574 38 1 10.0856 4.6748 0.7158 39 1 8.6152 7.3395 -1.3528 40 1 10.0865 8.3397 -1.3000 41 1 10.0807 6.8124 -2.2145 42 1 11.9256 6.0030 0.8282 43 1 12.0632 6.2602 -0.9278 44 1 15.2393 7.5553 0.4118 45 1 3.5905 3.4277 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342804016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:00 Heat of formation + Delta-G solvation = -161.287195 kcal Electronic energy + Delta-G solvation = -26164.025646 eV Core-core repulsion = 22146.511364 eV Total energy + Delta-G solvation = -4017.514282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78882 -40.99361 -39.43070 -38.24133 -37.54421 -36.86574 -34.62306 -32.53099 -32.15948 -30.92562 -29.17697 -28.65345 -27.85659 -26.05088 -24.98135 -23.48460 -23.07393 -21.84582 -21.77364 -19.72312 -18.58618 -18.38407 -17.77385 -17.61445 -17.44358 -17.31733 -16.90083 -16.80921 -16.26598 -16.12358 -15.84589 -15.21017 -15.06046 -14.95928 -14.64762 -14.48539 -14.30209 -14.05716 -13.79361 -13.45193 -13.24127 -13.06748 -12.96459 -12.82262 -12.62530 -12.56879 -12.40505 -12.26247 -12.04156 -11.97740 -11.87073 -11.75314 -11.58439 -11.37615 -10.86653 -10.61992 -10.21133 -9.34213 -8.97415 -8.21091 -6.30082 -0.46728 0.33152 1.39260 1.40753 1.41942 1.47633 1.55408 2.09099 2.41168 2.68331 3.11703 3.25888 3.55239 3.59343 3.71422 3.84568 3.93477 3.99845 4.08193 4.14831 4.24220 4.30518 4.31772 4.32016 4.40128 4.44417 4.52706 4.69803 4.70713 4.71801 4.81004 4.99833 5.08097 5.10139 5.17961 5.18157 5.24761 5.31385 5.31882 5.58225 5.65359 6.04911 6.30003 6.32081 6.56776 6.62551 6.85880 6.92509 7.39607 8.89846 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.001800 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.289518 B =15553.504976 C =16018.969417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.083 4.083 8 C -0.170 4.170 9 C 0.108 3.892 10 O -0.322 6.322 11 C 0.032 3.968 12 C 0.124 3.876 13 H 0.095 0.905 14 O -0.559 6.559 15 C 0.028 3.972 16 N -0.541 5.541 17 C 0.039 3.961 18 C 0.207 3.793 19 C -0.524 4.524 20 H 0.059 0.941 21 C 0.003 3.997 22 N -0.933 5.933 23 Si 0.967 3.033 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.110 4.110 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.383 0.617 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.010 0.990 43 H -0.035 1.035 44 H 0.264 0.736 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 -21.398 -1.412 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.358 3.642 4 O -0.429 6.429 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.189 4.189 9 C 0.062 3.938 10 O -0.236 6.236 11 C -0.043 4.043 12 C 0.064 3.936 13 H 0.113 0.887 14 O -0.365 6.365 15 C -0.100 4.100 16 N -0.265 5.265 17 C -0.110 4.110 18 C 0.081 3.919 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.195 4.195 22 N -0.573 5.573 23 Si 0.792 3.208 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.204 1.204 27 C -0.129 4.129 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.174 0.826 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.232 0.768 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.028 0.972 43 H -0.017 1.017 44 H 0.073 0.927 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.762 -20.313 -1.399 30.540 hybrid contribution 1.136 0.335 -0.265 1.213 sum -21.627 -19.978 -1.665 29.489 Atomic orbital electron populations 1.23635 0.74068 1.06153 1.02639 1.86523 1.25338 1.31086 1.83697 1.21347 0.89377 0.81615 0.71906 1.90838 1.67544 1.37267 1.47203 1.18818 0.88811 0.94588 1.08390 1.21647 0.94250 0.97808 0.97467 1.21391 0.94086 0.98225 0.96370 1.21922 1.01847 0.91887 1.03219 1.18931 0.91629 0.85412 0.97785 1.86139 1.21974 1.26930 1.88564 1.23669 0.77722 0.98770 1.04151 1.21778 0.92107 0.90937 0.88754 0.88703 1.86606 1.76528 1.57597 1.15780 1.22687 0.94884 0.90763 1.01698 1.61868 1.12296 1.13295 1.39055 1.22237 0.99865 0.99087 0.89784 1.19413 0.82454 0.96399 0.93608 1.21507 0.92085 0.94292 1.48346 0.92286 1.25853 0.96775 1.01738 0.95100 1.70068 1.01971 1.33778 1.51506 0.85368 0.78206 0.79425 0.77816 1.19118 1.20329 1.20372 1.20387 0.92206 0.97766 1.02561 0.91940 0.91918 0.84290 0.82005 0.81090 0.82588 0.89003 0.89276 0.76839 0.93752 0.90105 0.90916 0.92697 0.96604 0.97231 1.01699 0.92675 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.59 9.81 -56.21 -0.55 -6.14 16 3 C 0.51 11.05 7.90 70.34 0.56 11.61 16 4 O -0.54 -15.03 16.13 19.95 0.32 -14.71 16 5 C -0.10 -2.08 5.87 -20.11 -0.12 -2.20 16 6 C -0.09 -1.25 9.61 22.54 0.22 -1.03 16 7 C -0.08 -0.92 10.03 22.22 0.22 -0.69 16 8 C -0.17 -2.51 9.03 22.42 0.20 -2.31 16 9 C 0.11 2.30 6.68 22.47 0.15 2.45 16 10 O -0.32 -7.90 10.10 -87.93 -0.89 -8.78 16 11 C 0.03 0.64 4.37 71.98 0.31 0.95 16 12 C 0.12 3.31 3.12 30.59 0.10 3.41 16 13 H 0.10 2.72 6.55 -2.39 -0.02 2.70 16 14 O -0.56 -17.06 13.17 -144.34 -1.90 -18.97 16 15 C 0.03 0.89 4.62 86.30 0.40 1.29 16 16 N -0.54 -22.74 4.62 -927.04 -4.28 -27.02 16 17 C 0.04 1.49 9.14 127.69 1.17 2.66 16 18 C 0.21 10.79 4.72 85.56 0.40 11.19 16 19 C -0.52 -29.70 8.46 25.60 0.22 -29.49 16 20 H 0.06 3.35 7.12 -2.91 -0.02 3.33 16 21 C 0.00 0.19 5.46 84.66 0.46 0.65 16 22 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 23 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C -0.11 -2.56 9.53 22.64 0.22 -2.35 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.16 1.37 7.61 -2.91 -0.02 1.35 16 32 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.16 1.64 6.28 -2.91 -0.02 1.62 16 34 H 0.09 1.44 7.64 -2.39 -0.02 1.42 16 35 H 0.09 1.38 7.67 -2.39 -0.02 1.37 16 36 H 0.38 9.15 9.05 -74.06 -0.67 8.48 16 37 H 0.04 1.30 8.12 -2.39 -0.02 1.28 16 38 H 0.08 2.40 7.93 -2.39 -0.02 2.38 16 39 H 0.07 2.44 6.47 -2.38 -0.02 2.43 16 40 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 41 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.01 0.53 7.93 -2.39 -0.02 0.51 16 43 H -0.03 -1.94 8.12 -2.38 -0.02 -1.96 16 44 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.13 3.31 7.65 -2.91 -0.02 3.28 16 Total: -1.00 -74.91 380.92 1.05 -73.86 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.34 Total: 12.75 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.70 Total: -2.37 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -4.00 Total: -82.04 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -3.02 Total: -48.60 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -74.91 1.05 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342804016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.424 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds