Wall clock time and date at job start Tue Mar 31 2020 14:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99818 * 2 1 4 4 H 1.48502 * 109.47509 * 239.99872 * 3 2 1 5 5 H 1.48501 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46814 * 119.99824 * 3 2 1 7 7 C 1.37876 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00543 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47242 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47204 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99937 * 179.97438 * 11 10 9 13 13 O 1.21579 * 120.00205 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99785 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00188 * 180.02562 * 14 12 11 16 16 C 1.53116 * 109.52506 * 154.99873 * 15 14 12 17 17 C 1.53040 * 109.27862 * 177.56183 * 16 15 14 18 18 N 1.46851 * 109.51898 * 300.81641 * 17 16 15 19 19 C 1.46896 * 110.99976 * 185.83872 * 18 17 16 20 20 C 1.53005 * 109.47100 * 76.73622 * 19 18 17 21 21 F 1.39893 * 109.47176 * 53.97886 * 20 19 18 22 22 F 1.39902 * 109.47234 * 173.98277 * 20 19 18 23 23 F 1.39907 * 109.47100 * 293.98361 * 20 19 18 24 24 C 1.46845 * 111.19816 * 61.74181 * 18 17 16 25 25 C 1.53035 * 109.52666 * 298.26049 * 24 18 17 26 26 H 0.96996 * 120.00459 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47152 * 59.99787 * 9 7 2 28 28 H 1.09002 * 109.46883 * 300.00162 * 9 7 2 29 29 H 1.09002 * 109.47368 * 59.99739 * 10 9 7 30 30 H 1.09002 * 109.47167 * 299.99808 * 10 9 7 31 31 H 0.97003 * 119.99461 * 0.02562 * 11 10 9 32 32 H 0.97004 * 120.00431 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.51991 * 34.86452 * 15 14 12 34 34 H 1.08996 * 109.50598 * 57.61350 * 16 15 14 35 35 H 1.09000 * 109.53532 * 297.51433 * 16 15 14 36 36 H 1.08996 * 109.46060 * 180.80132 * 17 16 15 37 37 H 1.08999 * 109.45501 * 60.82422 * 17 16 15 38 38 H 1.08993 * 109.47537 * 196.73589 * 19 18 17 39 39 H 1.08999 * 109.47293 * 316.74198 * 19 18 17 40 40 H 1.09004 * 109.46137 * 58.27686 * 24 18 17 41 41 H 1.08998 * 109.46434 * 178.23627 * 24 18 17 42 42 H 1.09004 * 109.49721 * 299.23857 * 25 24 18 43 43 H 1.09000 * 109.50459 * 179.12147 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5130 -4.9308 -0.0020 12 6 2.1870 -6.0980 -0.0024 13 8 3.4028 -6.0979 -0.0028 14 7 1.5132 -7.2651 -0.0034 15 6 2.2457 -8.5339 -0.0033 16 6 1.3684 -9.6313 0.6055 17 6 2.1153 -10.9657 0.5473 18 7 2.4354 -11.2884 -0.8491 19 6 3.0297 -12.6274 -0.9571 20 6 1.9309 -13.6847 -0.8318 21 9 0.9243 -13.4243 -1.7678 22 9 2.4735 -14.9519 -1.0709 23 9 1.3900 -13.6448 0.4578 24 6 3.3157 -10.2727 -1.4404 25 6 2.6047 -8.9175 -1.4415 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5563 -0.8920 28 1 0.6241 -2.5575 0.8880 29 1 2.8715 -3.6047 0.8890 30 1 2.8728 -3.6039 -0.8910 31 1 0.5430 -4.9308 -0.0028 32 1 0.5431 -7.2653 -0.0034 33 1 3.1573 -8.4280 0.5848 34 1 0.4392 -9.7093 0.0411 35 1 1.1442 -9.3848 1.6433 36 1 1.4877 -11.7518 0.9671 37 1 3.0377 -10.8909 1.1233 38 1 3.5232 -12.7291 -1.9235 39 1 3.7599 -12.7662 -0.1598 40 1 4.2324 -10.2014 -0.8551 41 1 3.5600 -10.5555 -2.4643 42 1 1.6949 -8.9845 -2.0381 43 1 3.2643 -8.1608 -1.8662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343819841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:01 Heat of formation + Delta-G solvation = -194.135922 kcal Electronic energy + Delta-G solvation = -27274.788975 eV Core-core repulsion = 22746.286276 eV Total energy + Delta-G solvation = -4528.502699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.43602 -48.01975 -47.83943 -40.13904 -38.91396 -35.64060 -34.60190 -32.92810 -32.14747 -31.28134 -29.63717 -28.42700 -24.97599 -24.00775 -23.56359 -22.69826 -21.02574 -20.50564 -20.30558 -18.90432 -18.84756 -17.94170 -17.79552 -16.68192 -16.31607 -15.75900 -15.51028 -15.13752 -14.89007 -14.77183 -14.63558 -14.53268 -14.33063 -14.13927 -14.06054 -14.02595 -13.95357 -13.82147 -13.29257 -13.04912 -12.78778 -12.53893 -12.28577 -12.23520 -11.61880 -11.52251 -11.19281 -11.15035 -10.98646 -10.73387 -10.64344 -10.30191 -9.93196 -9.54820 -9.27054 -9.06695 -8.99520 -8.47884 -8.24727 -6.08574 -4.11311 2.30536 2.98528 3.05271 3.31670 3.35458 3.39061 3.43613 3.58263 3.62175 4.02459 4.35562 4.40527 4.45135 4.59871 4.65009 4.68773 4.82576 4.85676 4.99192 5.16521 5.28365 5.30255 5.31834 5.44902 5.58843 5.71395 5.88933 6.06780 6.26554 6.32452 6.40121 6.43752 6.64211 6.78224 7.00814 7.25625 7.57410 7.63958 7.90415 8.26572 8.44688 8.93248 9.00710 9.53299 11.03008 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.001798 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.265936 B =15572.632423 C =15743.247535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.599 6.599 14 N -0.749 5.749 15 C 0.164 3.836 16 C -0.122 4.122 17 C 0.041 3.959 18 N -0.534 5.534 19 C 0.009 3.991 20 C 0.458 3.542 21 F -0.172 7.172 22 F -0.186 7.186 23 F -0.183 7.183 24 C 0.063 3.937 25 C -0.128 4.128 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -29.670 -1.248 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.478 6.478 14 N -0.404 5.404 15 C 0.058 3.942 16 C -0.161 4.161 17 C -0.087 4.087 18 N -0.259 5.259 19 C -0.122 4.122 20 C 0.403 3.597 21 F -0.153 7.153 22 F -0.168 7.168 23 F -0.165 7.165 24 C -0.065 4.065 25 C -0.167 4.167 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.228 0.772 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.965 -29.496 -1.499 29.683 hybrid contribution 0.008 0.746 0.438 0.865 sum 2.973 -28.750 -1.062 28.923 Atomic orbital electron populations 1.69941 1.06078 1.26964 1.50347 1.24997 0.94904 0.99401 0.95022 0.86566 0.79505 0.82648 0.78773 1.20110 1.21264 1.20124 1.21014 0.93222 0.90380 1.51384 0.92286 1.19321 0.94254 0.91078 0.97797 1.21582 0.95625 0.80456 1.00579 1.45549 1.09866 1.05360 1.78440 1.16077 0.85666 0.80525 0.77859 1.90874 1.11780 1.86662 1.58527 1.45180 1.09370 1.04426 1.81466 1.20748 0.95561 0.81797 0.96066 1.21849 0.99440 0.92873 1.01905 1.22474 1.00221 0.98584 0.87395 1.61778 1.44778 1.00066 1.19245 1.23194 0.93176 0.89185 1.06608 1.20536 0.83686 0.81801 0.73705 1.93212 1.62998 1.93780 1.65321 1.93190 1.85794 1.43510 1.94264 1.93111 1.87755 1.96089 1.39548 1.22124 0.93598 0.90974 0.99776 1.22032 1.01733 0.95182 0.97778 0.92807 0.95974 0.95992 0.92846 0.92824 0.77385 0.77216 0.89728 0.90257 0.90341 0.88710 0.93713 0.86270 0.89771 0.93747 0.89905 0.90671 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -12.91 5.56 -65.22 -0.36 -13.27 16 12 C 0.70 11.88 8.53 -86.93 -0.74 11.14 16 13 O -0.60 -12.50 16.00 5.30 0.08 -12.42 16 14 N -0.75 -9.04 5.09 -58.56 -0.30 -9.34 16 15 C 0.16 1.71 2.52 -67.81 -0.17 1.54 16 16 C -0.12 -0.95 5.57 -26.65 -0.15 -1.10 16 17 C 0.04 0.29 5.23 -3.83 -0.02 0.27 16 18 N -0.53 -3.78 4.40 -234.67 -1.03 -4.82 16 19 C 0.01 0.05 5.12 -3.82 -0.02 0.03 16 20 C 0.46 3.26 3.27 37.16 0.12 3.38 16 21 F -0.17 -1.54 17.13 2.25 0.04 -1.50 16 22 F -0.19 -1.39 17.32 2.25 0.04 -1.35 16 23 F -0.18 -1.45 14.67 2.25 0.03 -1.42 16 24 C 0.06 0.46 5.42 -3.84 -0.02 0.44 16 25 C -0.13 -1.25 5.67 -26.65 -0.15 -1.40 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 5.90 8.49 -40.82 -0.35 5.55 16 32 H 0.39 3.76 8.62 -40.82 -0.35 3.41 16 33 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.66 5.47 -51.93 -0.28 0.38 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.12 0.45 7.77 -51.93 -0.40 0.05 16 39 H 0.08 0.34 7.98 -51.93 -0.41 -0.07 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -32.49 362.23 -8.42 -40.92 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.37 Total: 2.51 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.73 Total: 4.24 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.96 Total: -52.79 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.11 Total: -4.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.49 -8.42 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343819841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.217 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds