Wall clock time and date at job start Tue Mar 31 2020 14:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00248 * 2 1 4 4 H 1.48496 * 109.46994 * 240.00148 * 3 2 1 5 5 H 1.48500 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47262 * 119.99713 * 3 2 1 7 7 C 1.37874 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47301 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47351 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00243 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00115 * 0.27337 * 12 11 10 14 14 N 1.34784 * 120.00121 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99822 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46989 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.64274 * 56.69873 * 16 15 14 18 18 C 1.54598 * 110.72472 * 293.54912 * 16 15 14 19 19 C 1.53994 * 105.13575 * 219.68432 * 18 16 15 20 20 N 1.47901 * 107.06110 * 358.77387 * 19 18 16 21 21 C 1.46903 * 110.99776 * 145.84922 * 20 19 18 22 22 C 1.52992 * 109.46920 * 183.75882 * 21 20 19 23 23 F 1.39901 * 109.47248 * 66.02853 * 22 21 20 24 24 F 1.39901 * 109.47357 * 186.02921 * 22 21 20 25 25 F 1.39899 * 109.47346 * 306.03113 * 22 21 20 26 26 C 1.48527 * 105.81912 * 25.33356 * 20 19 18 27 27 H 0.97009 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.46986 * 59.99982 * 9 7 2 29 29 H 1.09004 * 109.46872 * 300.00477 * 9 7 2 30 30 H 1.09003 * 109.47028 * 59.99694 * 10 9 7 31 31 H 1.09004 * 109.47238 * 299.99874 * 10 9 7 32 32 H 0.97006 * 119.99547 * 359.97438 * 11 10 9 33 33 H 0.96997 * 119.99969 * 359.97438 * 14 12 11 34 34 H 1.08997 * 109.47879 * 300.00217 * 15 14 12 35 35 H 1.09000 * 109.47381 * 60.00407 * 15 14 12 36 36 H 1.08998 * 110.30941 * 338.59857 * 18 16 15 37 37 H 1.08994 * 110.30826 * 100.76795 * 18 16 15 38 38 H 1.09002 * 109.91977 * 118.13547 * 19 18 16 39 39 H 1.09006 * 109.91387 * 239.41729 * 19 18 16 40 40 H 1.09006 * 109.46660 * 303.75529 * 21 20 19 41 41 H 1.08998 * 109.47555 * 63.75654 * 21 20 19 42 42 H 1.09003 * 110.66389 * 202.35709 * 26 20 19 43 43 H 1.09001 * 110.66625 * 79.22884 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0980 -0.0003 13 8 3.4024 -6.0980 0.0038 14 7 1.5125 -7.2652 -0.0003 15 6 2.2450 -8.5339 -0.0013 16 6 1.2508 -9.6968 -0.0004 17 1 0.5745 -9.6248 -0.8521 18 6 0.4576 -9.7374 1.3260 19 6 0.3404 -11.2318 1.6788 20 7 1.0036 -11.9871 0.5939 21 6 1.6606 -13.1924 1.1170 22 6 2.4124 -13.8955 -0.0150 23 9 3.4656 -13.0838 -0.4500 24 9 2.9226 -15.1125 0.4494 25 9 1.5364 -14.1330 -1.0796 26 6 1.9960 -11.0553 -0.0002 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5570 0.8897 30 1 2.8718 -3.6043 0.8895 31 1 2.8718 -3.6044 -0.8906 32 1 0.5426 -4.9307 0.0008 33 1 0.5426 -7.2652 0.0004 34 1 2.8711 -8.5914 -0.8917 35 1 2.8723 -8.5920 0.8882 36 1 1.0001 -9.2056 2.1077 37 1 -0.5322 -9.3024 1.1884 38 1 0.8391 -11.4296 2.6277 39 1 -0.7097 -11.5172 1.7418 40 1 2.3642 -12.9115 1.9008 41 1 0.9092 -13.8667 1.5278 42 1 2.2461 -11.3570 -1.0174 43 1 2.8922 -11.0024 0.6179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343880484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:15 Heat of formation + Delta-G solvation = -190.605147 kcal Electronic energy + Delta-G solvation = -26942.240338 eV Core-core repulsion = 22413.890745 eV Total energy + Delta-G solvation = -4528.349593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.50973 -48.07272 -47.91763 -40.04223 -39.21396 -35.60264 -34.63734 -33.04572 -32.64518 -30.29236 -29.31005 -28.48739 -25.72140 -24.31809 -23.37453 -21.85063 -21.08919 -20.72297 -20.47836 -18.99677 -18.86402 -18.02647 -17.84777 -16.61511 -16.36696 -16.02726 -15.47825 -15.37398 -14.96591 -14.83034 -14.75047 -14.51040 -14.42605 -14.17823 -14.12350 -13.93608 -13.89354 -13.73706 -13.55446 -13.23781 -12.82274 -12.40978 -12.29762 -12.23300 -11.84065 -11.53779 -11.31156 -11.18964 -11.01078 -10.99375 -10.64583 -10.30388 -9.95313 -9.55333 -9.27397 -9.23201 -9.02911 -8.47731 -8.24250 -6.08714 -4.11335 2.23628 2.90119 3.09311 3.31854 3.32678 3.35534 3.39396 3.56160 3.59556 3.88660 4.09940 4.20478 4.40259 4.40899 4.54630 4.66008 4.68725 4.74045 4.93096 5.04939 5.13793 5.27904 5.28324 5.38925 5.47489 5.58308 5.74670 5.83709 6.09662 6.13462 6.30130 6.40394 6.58435 6.78308 7.00514 7.23277 7.57129 7.63815 7.90365 8.26409 8.43739 8.93133 9.00248 9.53298 11.02860 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.041157 B = 0.001728 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.166009 B =16196.386960 C =16552.200711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.753 5.753 15 C 0.150 3.850 16 C -0.102 4.102 17 H 0.094 0.906 18 C -0.129 4.129 19 C 0.040 3.960 20 N -0.511 5.511 21 C 0.000 4.000 22 C 0.456 3.544 23 F -0.182 7.182 24 F -0.184 7.184 25 F -0.172 7.172 26 C 0.031 3.969 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 -30.553 3.176 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.398 3.602 13 O -0.478 6.478 14 N -0.410 5.410 15 C 0.025 3.975 16 C -0.121 4.121 17 H 0.112 0.888 18 C -0.167 4.167 19 C -0.087 4.087 20 N -0.235 5.235 21 C -0.130 4.130 22 C 0.401 3.599 23 F -0.164 7.164 24 F -0.165 7.165 25 F -0.153 7.153 26 C -0.097 4.097 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.799 -30.601 2.776 30.737 hybrid contribution 0.183 0.968 0.451 1.084 sum -0.615 -29.633 3.227 29.814 Atomic orbital electron populations 1.69947 1.06077 1.26948 1.50379 1.24996 0.94905 0.99398 0.95014 0.86564 0.79504 0.82630 0.78783 1.20109 1.21268 1.20121 1.21018 0.93242 0.90378 1.51360 0.92270 1.19320 0.94252 0.91075 0.97793 1.21589 0.95638 0.80428 1.00633 1.45530 1.09835 1.05338 1.78500 1.16065 0.85631 0.80498 0.78053 1.90893 1.11809 1.86687 1.58370 1.45063 1.09406 1.04603 1.81886 1.21045 0.93342 0.80725 1.02395 1.22326 0.97341 0.93416 0.99059 0.88763 1.22531 1.01588 0.95192 0.97376 1.22908 1.00371 0.93212 0.92253 1.64851 1.25921 1.04554 1.28190 1.23466 1.00001 0.95962 0.93547 1.20405 0.77976 0.77271 0.84226 1.93205 1.59634 1.72506 1.91006 1.93198 1.88073 1.46660 1.88592 1.93222 1.68665 1.94491 1.58943 1.23546 0.93687 0.91058 1.01413 0.92819 0.95960 0.95996 0.92818 0.92790 0.77405 0.77250 0.91472 0.91788 0.90452 0.90212 0.92956 0.89382 0.89888 0.86025 0.88730 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.01 5.61 -4.05 -0.02 2.99 16 11 N -0.74 -12.92 5.56 -65.23 -0.36 -13.28 16 12 C 0.70 12.02 8.57 -86.92 -0.74 11.27 16 13 O -0.60 -12.87 16.34 5.29 0.09 -12.78 16 14 N -0.75 -8.94 5.40 -65.23 -0.35 -9.29 16 15 C 0.15 1.53 5.00 -4.04 -0.02 1.51 16 16 C -0.10 -0.73 3.13 -88.75 -0.28 -1.01 16 17 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 18 C -0.13 -0.77 6.20 -25.37 -0.16 -0.93 16 19 C 0.04 0.21 6.70 -2.75 -0.02 0.19 16 20 N -0.51 -3.26 5.17 -230.45 -1.19 -4.45 16 21 C 0.00 0.00 4.95 -3.83 -0.02 -0.02 16 22 C 0.46 3.21 3.08 37.15 0.11 3.33 16 23 F -0.18 -1.49 14.38 2.25 0.03 -1.46 16 24 F -0.18 -1.37 17.32 2.25 0.04 -1.33 16 25 F -0.17 -1.49 17.13 2.25 0.04 -1.45 16 26 C 0.03 0.22 4.28 -1.90 -0.01 0.21 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.39 5.84 8.49 -40.82 -0.35 5.49 16 33 H 0.39 3.58 8.34 -40.82 -0.34 3.24 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.08 0.52 7.80 -51.93 -0.41 0.12 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.32 7.98 -51.93 -0.41 -0.09 16 41 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.74 7.10 -51.93 -0.37 0.37 16 43 H 0.06 0.43 7.64 -51.93 -0.40 0.03 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -33.07 365.04 -8.64 -41.70 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.44 Total: 1.32 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.71 Total: 4.48 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -1.17 Total: -52.35 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.07 -8.64 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343880484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.904 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds