Wall clock time and date at job start Tue Mar 31 2020 14:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00248 * 2 1 4 4 H 1.48496 * 109.46994 * 240.00148 * 3 2 1 5 5 H 1.48500 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47262 * 119.99713 * 3 2 1 7 7 C 1.37874 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47301 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47351 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00243 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00115 * 0.27337 * 12 11 10 14 14 N 1.34784 * 120.00121 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99822 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46989 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.64274 * 56.69873 * 16 15 14 18 18 C 1.54598 * 110.72472 * 293.54912 * 16 15 14 19 19 C 1.53994 * 105.13575 * 219.68432 * 18 16 15 20 20 N 1.47901 * 107.06110 * 358.77387 * 19 18 16 21 21 C 1.46903 * 110.99776 * 145.84922 * 20 19 18 22 22 C 1.52992 * 109.46920 * 183.75882 * 21 20 19 23 23 F 1.39901 * 109.47248 * 66.02853 * 22 21 20 24 24 F 1.39901 * 109.47357 * 186.02921 * 22 21 20 25 25 F 1.39899 * 109.47346 * 306.03113 * 22 21 20 26 26 C 1.48527 * 105.81912 * 25.33356 * 20 19 18 27 27 H 0.97009 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.46986 * 59.99982 * 9 7 2 29 29 H 1.09004 * 109.46872 * 300.00477 * 9 7 2 30 30 H 1.09003 * 109.47028 * 59.99694 * 10 9 7 31 31 H 1.09004 * 109.47238 * 299.99874 * 10 9 7 32 32 H 0.97006 * 119.99547 * 359.97438 * 11 10 9 33 33 H 0.96997 * 119.99969 * 359.97438 * 14 12 11 34 34 H 1.08997 * 109.47879 * 300.00217 * 15 14 12 35 35 H 1.09000 * 109.47381 * 60.00407 * 15 14 12 36 36 H 1.08998 * 110.30941 * 338.59857 * 18 16 15 37 37 H 1.08994 * 110.30826 * 100.76795 * 18 16 15 38 38 H 1.09002 * 109.91977 * 118.13547 * 19 18 16 39 39 H 1.09006 * 109.91387 * 239.41729 * 19 18 16 40 40 H 1.09006 * 109.46660 * 303.75529 * 21 20 19 41 41 H 1.08998 * 109.47555 * 63.75654 * 21 20 19 42 42 H 1.09003 * 110.66389 * 202.35709 * 26 20 19 43 43 H 1.09001 * 110.66625 * 79.22884 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0980 -0.0003 13 8 3.4024 -6.0980 0.0038 14 7 1.5125 -7.2652 -0.0003 15 6 2.2450 -8.5339 -0.0013 16 6 1.2508 -9.6968 -0.0004 17 1 0.5745 -9.6248 -0.8521 18 6 0.4576 -9.7374 1.3260 19 6 0.3404 -11.2318 1.6788 20 7 1.0036 -11.9871 0.5939 21 6 1.6606 -13.1924 1.1170 22 6 2.4124 -13.8955 -0.0150 23 9 3.4656 -13.0838 -0.4500 24 9 2.9226 -15.1125 0.4494 25 9 1.5364 -14.1330 -1.0796 26 6 1.9960 -11.0553 -0.0002 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5570 0.8897 30 1 2.8718 -3.6043 0.8895 31 1 2.8718 -3.6044 -0.8906 32 1 0.5426 -4.9307 0.0008 33 1 0.5426 -7.2652 0.0004 34 1 2.8711 -8.5914 -0.8917 35 1 2.8723 -8.5920 0.8882 36 1 1.0001 -9.2056 2.1077 37 1 -0.5322 -9.3024 1.1884 38 1 0.8391 -11.4296 2.6277 39 1 -0.7097 -11.5172 1.7418 40 1 2.3642 -12.9115 1.9008 41 1 0.9092 -13.8667 1.5278 42 1 2.2461 -11.3570 -1.0174 43 1 2.8922 -11.0024 0.6179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343880484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:14 Heat of formation + Delta-G solvation = -214.807138 kcal Electronic energy + Delta-G solvation = -26943.289815 eV Core-core repulsion = 22413.890745 eV Total energy + Delta-G solvation = -4529.399070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.08850 -48.65216 -48.52313 -41.09659 -40.08194 -36.84307 -36.07947 -34.81116 -33.64459 -31.57482 -30.42704 -29.07544 -27.03299 -25.76817 -23.93311 -22.93527 -22.40186 -21.78352 -21.38326 -19.56917 -19.53012 -19.23035 -18.44076 -18.39802 -17.35489 -17.02573 -16.62265 -16.48832 -16.15743 -15.74782 -15.46840 -15.38877 -15.26093 -15.06909 -15.02209 -14.86154 -14.75307 -14.68969 -14.42523 -14.25145 -14.13155 -13.63069 -13.20668 -13.07519 -12.90810 -12.74396 -12.52567 -12.35564 -12.22030 -12.12521 -11.92178 -11.67559 -11.52794 -11.49224 -11.19585 -10.58813 -10.33122 -9.70476 -9.66073 -8.22613 -6.32691 1.42903 1.45251 1.52985 1.73607 1.77171 2.18788 2.42303 2.52876 2.82331 3.06778 3.12125 3.32968 3.36065 3.66459 3.69869 3.83025 4.13871 4.25567 4.30312 4.34762 4.43144 4.49342 4.54001 4.63199 4.63666 4.77842 4.88494 4.92108 5.02784 5.15333 5.23866 5.33267 5.50787 5.53899 5.61508 5.63733 5.68489 5.80601 6.07353 6.18955 6.80214 7.15911 7.36440 7.62311 8.88933 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.041157 B = 0.001728 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.166009 B =16196.386960 C =16552.200711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.643 6.643 14 N -0.729 5.729 15 C 0.151 3.849 16 C -0.091 4.091 17 H 0.099 0.901 18 C -0.127 4.127 19 C 0.042 3.958 20 N -0.520 5.520 21 C 0.004 3.996 22 C 0.452 3.548 23 F -0.192 7.192 24 F -0.187 7.187 25 F -0.184 7.184 26 C 0.032 3.968 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.407 0.593 33 H 0.412 0.588 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -31.223 3.866 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.525 6.525 14 N -0.386 5.386 15 C 0.026 3.974 16 C -0.111 4.111 17 H 0.117 0.883 18 C -0.165 4.165 19 C -0.085 4.085 20 N -0.245 5.245 21 C -0.125 4.125 22 C 0.398 3.602 23 F -0.173 7.173 24 F -0.168 7.168 25 F -0.165 7.165 26 C -0.096 4.096 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.243 0.757 33 H 0.248 0.752 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.161 0.839 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.447 -31.322 3.468 31.547 hybrid contribution 0.356 1.085 0.224 1.164 sum -1.090 -30.238 3.692 30.482 Atomic orbital electron populations 1.70049 1.07471 1.28020 1.50957 1.25860 0.95819 1.03037 0.94455 0.85507 0.78305 0.78190 0.79093 1.19435 1.20584 1.19360 1.21444 0.93602 0.91956 1.51587 0.92340 1.19124 0.94226 0.91590 0.96406 1.21060 0.94625 0.81211 0.99519 1.45201 1.10399 1.04408 1.78771 1.16187 0.85113 0.81348 0.77733 1.90866 1.13909 1.87393 1.60318 1.44873 1.10281 1.03518 1.79918 1.21137 0.94004 0.80748 1.01467 1.22198 0.96672 0.92027 1.00162 0.88320 1.22530 1.01720 0.96055 0.96186 1.22943 1.01001 0.92243 0.92301 1.64843 1.25771 1.04795 1.29068 1.23562 1.00686 0.95572 0.92721 1.20772 0.77768 0.77224 0.84480 1.93186 1.60182 1.72736 1.91212 1.93188 1.88158 1.46965 1.88539 1.93195 1.68976 1.94584 1.59747 1.23468 0.93936 0.91122 1.01067 0.92558 0.97265 0.97192 0.93887 0.93985 0.75710 0.75206 0.92726 0.92500 0.91057 0.89151 0.91799 0.88329 0.88382 0.83950 0.89733 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.16 6.97 5.61 86.38 0.48 7.45 16 11 N -0.73 -25.36 5.56 -478.54 -2.66 -28.02 16 12 C 0.70 23.67 8.57 179.05 1.53 25.20 16 13 O -0.64 -27.81 16.34 -4.00 -0.07 -27.87 16 14 N -0.73 -16.45 5.40 -478.54 -2.59 -19.03 16 15 C 0.15 2.96 5.00 86.38 0.43 3.40 16 16 C -0.09 -1.16 3.13 -9.59 -0.03 -1.19 16 17 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 18 C -0.13 -1.23 6.20 31.47 0.20 -1.03 16 19 C 0.04 0.32 6.70 86.45 0.58 0.90 16 20 N -0.52 -5.56 5.17 -883.01 -4.57 -10.12 16 21 C 0.00 0.03 4.95 86.30 0.43 0.46 16 22 C 0.45 5.91 3.08 71.98 0.22 6.13 16 23 F -0.19 -3.05 14.38 44.97 0.65 -2.40 16 24 F -0.19 -2.60 17.32 44.97 0.78 -1.82 16 25 F -0.18 -3.05 17.13 44.97 0.77 -2.28 16 26 C 0.03 0.42 4.28 86.65 0.37 0.79 16 27 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.41 11.72 8.49 -92.70 -0.79 10.93 16 33 H 0.41 6.62 8.34 -92.71 -0.77 5.85 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.23 8.07 -2.39 -0.02 1.21 16 36 H 0.07 0.81 7.80 -2.39 -0.02 0.79 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.37 7.67 -2.39 -0.02 0.35 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.10 0.51 7.98 -2.38 -0.02 0.49 16 41 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 1.27 7.10 -2.39 -0.02 1.26 16 43 H 0.06 0.78 7.64 -2.39 -0.02 0.76 16 Total: -1.00 -70.95 365.04 -0.83 -71.77 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.52 Total: 13.91 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.06 Total: 13.97 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -9.53 Total: -110.85 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.87 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 2.20 Total: -6.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.95 -0.83 -71.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343880484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.033 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds