Wall clock time and date at job start Tue Mar 31 2020 14:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36000 * 117.00125 * 2 1 4 4 C 1.38665 * 120.04268 * 359.97438 * 3 2 1 5 5 C 1.38228 * 120.08600 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.91004 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46866 * 90.00046 * 6 5 4 8 8 C 1.50699 * 109.46866 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00169 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47324 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00339 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99769 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46755 * 89.99832 * 16 14 12 18 18 H 1.48499 * 109.47293 * 209.99842 * 16 14 12 19 19 H 1.48500 * 109.46738 * 330.00088 * 16 14 12 20 20 C 1.38233 * 120.18055 * 0.25229 * 5 4 3 21 21 C 1.38675 * 120.08484 * 359.45229 * 20 5 4 22 22 O 1.35995 * 120.03971 * 180.29721 * 21 20 5 23 23 C 1.42899 * 117.00359 * 0.27122 * 22 21 20 24 24 C 1.38969 * 119.91106 * 0.56646 * 21 20 5 25 25 O 1.36097 * 120.09071 * 179.68443 * 24 21 20 26 26 C 1.42901 * 116.99660 * 270.02393 * 25 24 21 27 27 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47195 * 300.00060 * 1 2 3 29 29 H 1.08998 * 109.47118 * 59.99908 * 1 2 3 30 30 H 1.07994 * 119.95654 * 0.02716 * 4 3 2 31 31 H 1.08993 * 109.47512 * 330.00168 * 6 5 4 32 32 H 1.09000 * 109.47247 * 209.99878 * 6 5 4 33 33 H 1.09000 * 109.47050 * 299.99952 * 7 6 5 34 34 H 1.09001 * 109.46801 * 60.00064 * 7 6 5 35 35 H 0.96996 * 119.99844 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46923 * 300.00119 * 11 10 8 37 37 H 1.09004 * 109.47042 * 59.99705 * 11 10 8 38 38 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 39 39 H 1.07995 * 119.95470 * 179.72582 * 20 5 4 40 40 H 1.08999 * 109.47054 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46869 * 299.99851 * 23 22 21 42 42 H 1.09002 * 109.46928 * 60.00546 * 23 22 21 43 43 H 1.09007 * 109.47066 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47397 * 299.99608 * 26 25 24 45 45 H 1.09004 * 109.47211 * 59.99943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 -0.0005 5 6 1.9187 3.6074 -0.0011 6 6 1.0950 4.8693 -0.0022 7 6 0.8157 5.2973 1.4399 8 6 -0.0074 6.5596 1.4388 9 8 -0.3377 7.0673 0.3880 10 7 -0.3757 7.1251 2.6055 11 6 -1.1764 8.3519 2.6044 12 6 -1.4515 8.7736 4.0248 13 1 -1.0685 8.1862 4.8462 14 6 -2.1928 9.9086 4.2757 15 7 -2.6596 10.6236 3.2754 16 14 -2.5344 10.4309 6.0364 17 1 -1.4526 11.3349 6.5032 18 1 -3.8358 11.1434 6.0978 19 1 -2.5861 9.2296 6.9078 20 6 3.2988 3.6851 -0.0063 21 6 4.0604 2.5262 0.0004 22 8 5.4181 2.6037 0.0013 23 6 5.9933 3.9118 0.0011 24 6 3.4343 1.2855 0.0005 25 8 4.1781 0.1458 0.0006 26 6 4.5330 -0.3973 -1.2727 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2136 2.3188 -0.0005 31 1 0.1514 4.6869 -0.5163 32 1 1.6419 5.6597 -0.5163 33 1 0.2688 4.5069 1.9540 34 1 1.7594 5.4798 1.9540 35 1 -0.1113 6.7193 3.4458 36 1 -0.6297 9.1421 2.0898 37 1 -2.1203 8.1693 2.0907 38 1 -3.1809 11.4224 3.4519 39 1 3.7846 4.6496 -0.0112 40 1 7.0803 3.8308 0.0015 41 1 5.6698 4.4508 -0.8893 42 1 5.6686 4.4516 0.8907 43 1 5.1240 -1.3020 -1.1299 44 1 3.6279 -0.6384 -1.8300 45 1 5.1184 0.3346 -1.8294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343900930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:36 Heat of formation + Delta-G solvation = -134.950695 kcal Electronic energy + Delta-G solvation = -26764.988450 eV Core-core repulsion = 22748.616204 eV Total energy + Delta-G solvation = -4016.372246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03701 -39.23136 -38.95848 -37.92648 -37.04113 -34.25801 -33.14300 -32.32716 -29.88111 -29.87266 -28.08872 -27.59297 -27.33637 -26.40299 -24.26661 -22.42201 -22.22176 -21.30624 -19.61947 -18.61238 -17.48997 -17.45137 -17.07274 -16.77299 -16.44182 -15.76116 -15.69743 -15.20751 -15.17866 -15.12700 -14.95925 -14.73539 -14.36010 -14.24377 -13.56124 -13.11908 -12.97482 -12.89856 -12.43535 -12.34704 -12.18037 -11.99943 -11.84181 -11.82948 -11.77476 -11.68363 -11.10657 -10.98328 -10.95260 -10.86208 -10.65980 -10.33707 -10.12586 -9.42271 -9.09958 -8.76041 -8.39686 -8.35963 -7.91158 -6.19067 -4.26100 0.94564 1.14915 2.57794 3.20298 3.22415 3.28714 3.31094 3.34474 3.38772 3.72453 4.05898 4.33236 4.59340 4.67574 4.80699 4.88704 4.91350 4.91527 4.92828 4.94135 5.12360 5.16976 5.18893 5.21065 5.24645 5.25350 5.27035 5.27389 5.47507 5.49744 5.79827 5.85577 5.88506 5.95637 6.09117 6.25368 6.42013 6.81267 7.01042 7.27798 7.40974 7.48819 7.50701 7.63991 7.94632 8.60072 8.75178 9.07317 9.40711 10.91109 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.002252 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.273651 B =12429.759907 C =13126.134793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.151 3.849 4 C -0.230 4.230 5 C 0.001 3.999 6 C -0.067 4.067 7 C -0.135 4.135 8 C 0.497 3.503 9 O -0.558 6.558 10 N -0.713 5.713 11 C 0.249 3.751 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.230 4.230 21 C 0.151 3.849 22 O -0.305 6.305 23 C 0.024 3.976 24 C 0.018 3.982 25 O -0.313 6.313 26 C 0.035 3.965 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.391 0.609 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.665 -20.948 -8.109 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.104 3.896 4 C -0.249 4.249 5 C 0.001 3.999 6 C -0.105 4.105 7 C -0.175 4.175 8 C 0.281 3.719 9 O -0.438 6.438 10 N -0.361 5.361 11 C 0.128 3.872 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.249 4.249 21 C 0.104 3.896 22 O -0.218 6.218 23 C -0.071 4.071 24 C -0.027 4.027 25 O -0.229 6.229 26 C -0.059 4.059 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.223 0.777 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.588 -20.837 -8.740 26.367 hybrid contribution -0.449 0.702 1.154 1.423 sum 13.140 -20.135 -7.586 25.211 Atomic orbital electron populations 1.23147 0.77977 1.04117 1.01862 1.86132 1.21530 1.25952 1.88148 1.18946 0.90550 0.84964 0.95101 1.21013 1.00397 0.90976 1.12480 1.19593 0.92877 0.94677 0.92758 1.20385 1.00066 0.93438 0.96564 1.21635 1.01133 0.96907 0.97844 1.20465 0.80984 0.85762 0.84642 1.90659 1.56977 1.64776 1.31415 1.46491 1.53771 1.28839 1.07018 1.19104 0.90326 0.80387 0.97372 1.21230 1.34977 1.10435 0.91556 0.91899 1.24959 0.95249 0.96052 0.97799 1.69973 1.35073 1.16340 1.30911 0.86412 0.77801 0.78774 0.83912 1.20443 1.20989 1.19739 1.21018 0.94045 0.97325 1.12482 1.18943 0.82928 0.92590 0.95096 1.86131 1.16651 1.30835 1.88145 1.23148 0.99186 0.82905 1.01861 1.16918 0.86380 0.84692 1.14742 1.86166 1.70092 1.37987 1.28672 1.22961 0.99419 0.98389 0.85162 0.88060 0.92167 0.92370 0.84566 0.89751 0.89750 0.89242 0.89246 0.77653 0.95566 0.95568 0.92436 0.84565 0.88060 0.92376 0.92157 0.89195 0.93858 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.44 10.28 -34.32 -0.35 -3.80 16 3 C 0.15 1.83 6.70 -39.15 -0.26 1.57 16 4 C -0.23 -2.55 8.69 -39.43 -0.34 -2.90 16 5 C 0.00 0.02 5.13 -104.63 -0.54 -0.52 16 6 C -0.07 -0.83 4.63 -27.88 -0.13 -0.96 16 7 C -0.13 -1.79 5.68 -27.88 -0.16 -1.94 16 8 C 0.50 9.46 7.83 -10.99 -0.09 9.37 16 9 O -0.56 -12.90 15.98 5.56 0.09 -12.81 16 10 N -0.71 -14.68 5.55 -61.47 -0.34 -15.02 16 11 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 12 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 16 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.23 -2.56 8.68 -39.42 -0.34 -2.90 16 21 C 0.15 1.83 6.70 -39.15 -0.26 1.57 16 22 O -0.30 -3.44 10.28 -34.31 -0.35 -3.80 16 23 C 0.02 0.18 9.81 101.05 0.99 1.17 16 24 C 0.02 0.23 5.75 -39.04 -0.22 0.01 16 25 O -0.31 -4.16 9.99 -45.30 -0.45 -4.61 16 26 C 0.04 0.34 11.13 101.05 1.13 1.47 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.14 1.29 6.29 -52.49 -0.33 0.96 16 31 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 32 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.14 1.29 6.29 -52.49 -0.33 0.96 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 42 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -34.54 383.74 -6.36 -40.90 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.77 Total: 2.58 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 0.32 Total: 0.28 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.40 Total: -40.22 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.07 Total: -25.02 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.54 -6.36 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343900930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.050 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds