Wall clock time and date at job start Tue Mar 31 2020 14:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36000 * 117.00125 * 2 1 4 4 C 1.38665 * 120.04268 * 359.97438 * 3 2 1 5 5 C 1.38228 * 120.08600 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.91004 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46866 * 90.00046 * 6 5 4 8 8 C 1.50699 * 109.46866 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00169 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47324 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00339 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99769 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46755 * 89.99832 * 16 14 12 18 18 H 1.48499 * 109.47293 * 209.99842 * 16 14 12 19 19 H 1.48500 * 109.46738 * 330.00088 * 16 14 12 20 20 C 1.38233 * 120.18055 * 0.25229 * 5 4 3 21 21 C 1.38675 * 120.08484 * 359.45229 * 20 5 4 22 22 O 1.35995 * 120.03971 * 180.29721 * 21 20 5 23 23 C 1.42899 * 117.00359 * 0.27122 * 22 21 20 24 24 C 1.38969 * 119.91106 * 0.56646 * 21 20 5 25 25 O 1.36097 * 120.09071 * 179.68443 * 24 21 20 26 26 C 1.42901 * 116.99660 * 270.02393 * 25 24 21 27 27 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47195 * 300.00060 * 1 2 3 29 29 H 1.08998 * 109.47118 * 59.99908 * 1 2 3 30 30 H 1.07994 * 119.95654 * 0.02716 * 4 3 2 31 31 H 1.08993 * 109.47512 * 330.00168 * 6 5 4 32 32 H 1.09000 * 109.47247 * 209.99878 * 6 5 4 33 33 H 1.09000 * 109.47050 * 299.99952 * 7 6 5 34 34 H 1.09001 * 109.46801 * 60.00064 * 7 6 5 35 35 H 0.96996 * 119.99844 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46923 * 300.00119 * 11 10 8 37 37 H 1.09004 * 109.47042 * 59.99705 * 11 10 8 38 38 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 39 39 H 1.07995 * 119.95470 * 179.72582 * 20 5 4 40 40 H 1.08999 * 109.47054 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46869 * 299.99851 * 23 22 21 42 42 H 1.09002 * 109.46928 * 60.00546 * 23 22 21 43 43 H 1.09007 * 109.47066 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47397 * 299.99608 * 26 25 24 45 45 H 1.09004 * 109.47211 * 59.99943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 -0.0005 5 6 1.9187 3.6074 -0.0011 6 6 1.0950 4.8693 -0.0022 7 6 0.8157 5.2973 1.4399 8 6 -0.0074 6.5596 1.4388 9 8 -0.3377 7.0673 0.3880 10 7 -0.3757 7.1251 2.6055 11 6 -1.1764 8.3519 2.6044 12 6 -1.4515 8.7736 4.0248 13 1 -1.0685 8.1862 4.8462 14 6 -2.1928 9.9086 4.2757 15 7 -2.6596 10.6236 3.2754 16 14 -2.5344 10.4309 6.0364 17 1 -1.4526 11.3349 6.5032 18 1 -3.8358 11.1434 6.0978 19 1 -2.5861 9.2296 6.9078 20 6 3.2988 3.6851 -0.0063 21 6 4.0604 2.5262 0.0004 22 8 5.4181 2.6037 0.0013 23 6 5.9933 3.9118 0.0011 24 6 3.4343 1.2855 0.0005 25 8 4.1781 0.1458 0.0006 26 6 4.5330 -0.3973 -1.2727 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2136 2.3188 -0.0005 31 1 0.1514 4.6869 -0.5163 32 1 1.6419 5.6597 -0.5163 33 1 0.2688 4.5069 1.9540 34 1 1.7594 5.4798 1.9540 35 1 -0.1113 6.7193 3.4458 36 1 -0.6297 9.1421 2.0898 37 1 -2.1203 8.1693 2.0907 38 1 -3.1809 11.4224 3.4519 39 1 3.7846 4.6496 -0.0112 40 1 7.0803 3.8308 0.0015 41 1 5.6698 4.4508 -0.8893 42 1 5.6686 4.4516 0.8907 43 1 5.1240 -1.3020 -1.1299 44 1 3.6279 -0.6384 -1.8300 45 1 5.1184 0.3346 -1.8294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343900930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:36 Heat of formation + Delta-G solvation = -158.689516 kcal Electronic energy + Delta-G solvation = -26766.017842 eV Core-core repulsion = 22748.616204 eV Total energy + Delta-G solvation = -4017.401638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86942 -40.53402 -39.99424 -38.78927 -37.94173 -36.14699 -34.38670 -34.12553 -30.92208 -30.68017 -29.29904 -28.72413 -28.02038 -27.44028 -25.53358 -24.12779 -23.00670 -22.32258 -21.23484 -19.45884 -18.92342 -18.28425 -18.25568 -17.55068 -17.43909 -17.22105 -17.01077 -16.51303 -16.44819 -16.04052 -15.98210 -15.72212 -15.49303 -15.23300 -14.81980 -14.55647 -14.05439 -14.03378 -13.75743 -13.54111 -13.35000 -13.07830 -13.03463 -12.86156 -12.71072 -12.66960 -12.47208 -12.41182 -12.22653 -11.95393 -11.89899 -11.49313 -11.46597 -10.97168 -10.80146 -10.73676 -9.80702 -9.24143 -9.21715 -8.29164 -6.45498 0.06506 0.30545 1.43400 1.45376 1.56639 1.80018 1.86268 2.30286 2.37420 2.63561 2.68862 2.91532 3.05740 3.59226 3.88665 3.97055 3.98586 4.14921 4.21931 4.24936 4.36935 4.39771 4.40199 4.42349 4.43608 4.48598 4.48821 4.68402 4.74209 4.74783 4.78536 4.88011 4.97997 5.12453 5.13789 5.15795 5.25420 5.39375 5.50247 5.52333 5.70858 5.85929 6.03468 6.26330 6.66030 6.67460 6.93001 7.24005 7.51895 8.82893 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.002252 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.273651 B =12429.759907 C =13126.134793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.144 3.856 4 C -0.228 4.228 5 C 0.000 4.000 6 C -0.060 4.060 7 C -0.119 4.119 8 C 0.495 3.505 9 O -0.603 6.603 10 N -0.710 5.710 11 C 0.265 3.735 12 C -0.556 4.556 13 H 0.083 0.917 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.256 1.256 20 C -0.228 4.228 21 C 0.144 3.856 22 O -0.322 6.322 23 C 0.016 3.984 24 C -0.003 4.003 25 O -0.335 6.335 26 C 0.033 3.967 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.409 0.591 36 H -0.013 1.013 37 H -0.013 1.013 38 H 0.268 0.732 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.418 -22.111 -6.511 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.097 3.903 4 C -0.247 4.247 5 C 0.000 4.000 6 C -0.097 4.097 7 C -0.158 4.158 8 C 0.283 3.717 9 O -0.485 6.485 10 N -0.360 5.360 11 C 0.142 3.858 12 C -0.594 4.594 13 H 0.101 0.899 14 C -0.197 4.197 15 N -0.569 5.569 16 Si 0.807 3.193 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.180 1.180 20 C -0.247 4.247 21 C 0.097 3.903 22 O -0.235 6.235 23 C -0.079 4.079 24 C -0.048 4.048 25 O -0.252 6.252 26 C -0.061 4.061 27 H 0.140 0.860 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.244 0.756 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.077 0.923 39 H 0.169 0.831 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.063 0.937 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.371 -22.046 -7.129 27.265 hybrid contribution -0.644 1.007 0.556 1.319 sum 13.726 -21.039 -6.574 25.966 Atomic orbital electron populations 1.23422 0.76108 1.05782 1.02544 1.86114 1.23508 1.25781 1.88063 1.19034 0.90505 0.85553 0.95223 1.21153 1.01153 0.90517 1.11829 1.19455 0.92869 0.94150 0.93574 1.20267 0.99870 0.93739 0.95862 1.21607 1.01252 0.93881 0.99091 1.21503 0.80220 0.86828 0.83173 1.90642 1.58552 1.66375 1.32954 1.46252 1.53505 1.27462 1.08749 1.18533 0.88810 0.81717 0.96737 1.21629 1.34871 1.10818 0.92034 0.89864 1.26059 0.94809 0.96042 1.02745 1.70132 1.36006 1.17007 1.33780 0.85174 0.77512 0.78777 0.77871 1.19620 1.21003 1.17956 1.21158 0.93918 0.97747 1.11830 1.19032 0.83487 0.92575 0.95217 1.86113 1.16272 1.33023 1.88060 1.23424 1.00268 0.81619 1.02543 1.17270 0.87033 0.85061 1.15427 1.86105 1.70334 1.38325 1.30459 1.23108 0.99774 0.99070 0.84148 0.86044 0.91566 0.91524 0.83062 0.90441 0.90443 0.86635 0.86641 0.75568 0.99468 0.99464 0.92271 0.83062 0.86044 0.91527 0.91559 0.87210 0.93718 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.93 10.28 -79.60 -0.82 -7.74 16 3 C 0.14 3.34 6.70 22.55 0.15 3.49 16 4 C -0.23 -4.68 8.69 22.37 0.19 -4.49 16 5 C 0.00 0.00 5.13 -19.87 -0.10 -0.10 16 6 C -0.06 -1.39 4.63 29.85 0.14 -1.25 16 7 C -0.12 -2.85 5.68 29.85 0.17 -2.68 16 8 C 0.49 18.59 7.83 87.66 0.69 19.28 16 9 O -0.60 -28.44 15.98 -3.04 -0.05 -28.48 16 10 N -0.71 -28.98 5.55 -466.78 -2.59 -31.57 16 11 C 0.27 14.34 5.43 85.63 0.46 14.80 16 12 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 13 H 0.08 4.04 7.60 -2.91 -0.02 4.01 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 16 Si 0.98 41.91 29.54 68.60 2.03 43.94 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.23 -4.69 8.68 22.37 0.19 -4.49 16 21 C 0.14 3.34 6.70 22.55 0.15 3.49 16 22 O -0.32 -6.93 10.28 -79.56 -0.82 -7.74 16 23 C 0.02 0.20 9.81 113.37 1.11 1.31 16 24 C 0.00 -0.07 5.75 22.62 0.13 0.06 16 25 O -0.34 -8.79 9.99 -70.50 -0.70 -9.50 16 26 C 0.03 0.62 11.13 113.37 1.26 1.88 16 27 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 29 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.15 2.54 6.29 -2.91 -0.02 2.53 16 31 H 0.08 1.92 8.04 -2.39 -0.02 1.91 16 32 H 0.08 1.92 8.04 -2.39 -0.02 1.91 16 33 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.41 13.65 8.32 -92.71 -0.77 12.88 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.15 2.54 6.29 -2.91 -0.02 2.53 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 42 H 0.07 0.77 7.67 -2.39 -0.02 0.76 16 43 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.15 383.74 3.93 -73.22 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.23 Total: 19.73 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.36 Total: 3.59 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.30 Total: -87.01 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -2.39 Total: -53.47 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -77.15 3.93 -73.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343900930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.468 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds