Wall clock time and date at job start Tue Mar 31 2020 13:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 119.99984 * 2 1 4 4 N 1.34777 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.38999 * 119.99735 * 185.25742 * 4 2 1 6 6 N 1.29625 * 124.94911 * 0.30202 * 5 4 2 7 7 C 1.31988 * 116.92038 * 180.25117 * 6 5 4 8 8 C 1.50701 * 122.71749 * 179.75403 * 7 6 5 9 9 N 1.46898 * 109.47404 * 274.73442 * 8 7 6 10 10 C 1.46902 * 111.00374 * 179.97438 * 9 8 7 11 11 C 1.52990 * 109.47039 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46974 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47316 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99773 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00052 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99944 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46764 * 60.00275 * 17 15 13 19 19 H 1.48493 * 109.47103 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47096 * 300.00696 * 17 15 13 21 21 C 1.33438 * 114.56701 * 359.48411 * 7 6 5 22 22 S 1.70972 * 124.94479 * 180.02562 * 5 4 2 23 23 C 1.46497 * 120.00134 * 5.25967 * 4 2 1 24 24 C 1.52994 * 117.49800 * 132.89319 * 23 4 2 25 25 C 1.52993 * 117.50119 * 64.27024 * 23 4 2 26 26 H 1.09000 * 109.47296 * 274.93249 * 1 2 3 27 27 H 1.08997 * 109.47665 * 34.93622 * 1 2 3 28 28 H 1.08998 * 109.47021 * 154.93847 * 1 2 3 29 29 H 1.09006 * 109.46963 * 34.73598 * 8 7 6 30 30 H 1.08997 * 109.47197 * 154.72922 * 8 7 6 31 31 H 1.00904 * 110.99810 * 303.95734 * 9 8 7 32 32 H 1.09001 * 109.46807 * 300.00334 * 10 9 8 33 33 H 1.08996 * 109.46524 * 59.99711 * 10 9 8 34 34 H 1.09001 * 109.47391 * 299.99728 * 11 10 9 35 35 H 1.08996 * 109.47901 * 60.00306 * 11 10 9 36 36 H 1.08998 * 109.47290 * 299.99571 * 12 11 10 37 37 H 1.08997 * 109.47290 * 59.99896 * 12 11 10 38 38 H 0.97006 * 120.00104 * 179.97438 * 16 15 13 39 39 H 1.08007 * 125.97215 * 180.24726 * 21 7 6 40 40 H 1.08999 * 115.55110 * 278.59720 * 23 4 2 41 41 H 1.09000 * 117.50443 * 0.02562 * 24 23 4 42 42 H 1.09005 * 117.49880 * 145.02482 * 24 23 4 43 43 H 1.08996 * 117.50481 * 214.98298 * 25 23 4 44 44 H 1.09008 * 117.50000 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5664 -1.1696 0.1108 6 7 4.3042 -0.1098 0.2235 7 6 5.6079 -0.2959 0.3128 8 6 6.5862 0.8429 0.4425 9 7 6.9214 1.3552 -0.8928 10 6 7.8748 2.4693 -0.8053 11 6 8.1984 2.9753 -2.2124 12 6 9.1919 4.1353 -2.1214 13 6 9.5112 4.6333 -3.5074 14 1 9.0512 4.1692 -4.3672 15 6 10.3898 5.6822 -3.6777 16 7 10.9495 6.2477 -2.6307 17 14 10.7850 6.2999 -5.3958 18 1 9.5377 6.7663 -6.0531 19 1 11.7493 7.4257 -5.3074 20 1 11.3823 5.1984 -6.1926 21 6 5.9889 -1.5744 0.2845 22 16 4.5453 -2.5713 0.1243 23 6 1.4530 -2.4333 -0.1152 24 6 1.9792 -3.4615 -1.1186 25 6 0.6899 -2.6932 -1.4155 26 1 -0.3634 0.0884 1.0238 27 1 -0.3634 0.8424 -0.5885 28 1 -0.3633 -0.9309 -0.4353 29 1 6.1389 1.6404 1.0359 30 1 7.4925 0.4891 0.9340 31 1 7.2783 0.6189 -1.4834 32 1 7.4360 3.2779 -0.2208 33 1 8.7901 2.1271 -0.3224 34 1 8.6371 2.1668 -2.7973 35 1 7.2830 3.3176 -2.6950 36 1 8.7537 4.9439 -1.5364 37 1 10.1073 3.7927 -1.6390 38 1 11.5680 6.9854 -2.7505 39 1 7.0050 -1.9351 0.3483 40 1 1.0152 -2.8101 0.8091 41 1 2.8672 -3.1961 -1.6923 42 1 1.8877 -4.5150 -0.8544 43 1 -0.2498 -3.2412 -1.3468 44 1 0.7290 -1.9219 -2.1849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344258553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:39 Heat of formation + Delta-G solvation = 21.278323 kcal Electronic energy + Delta-G solvation = -24021.025975 eV Core-core repulsion = 20486.473949 eV Total energy + Delta-G solvation = -3534.552025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83342 -40.35756 -38.57658 -37.71473 -35.59174 -34.70431 -33.27523 -31.67124 -30.23570 -28.60891 -26.73638 -25.36817 -24.25002 -23.86633 -23.30390 -22.09447 -21.14442 -20.15420 -19.06651 -18.49985 -17.83982 -17.79505 -17.05121 -16.73360 -16.59251 -16.02024 -15.83314 -15.74340 -15.26496 -15.01668 -14.86693 -14.46992 -14.26889 -14.01510 -13.71868 -13.53811 -13.31925 -13.18868 -13.06774 -12.69184 -12.59737 -12.49341 -12.37373 -12.27289 -12.01715 -11.72187 -11.58076 -11.44696 -11.27491 -11.16011 -11.09041 -10.56856 -10.30652 -10.15387 -9.44872 -9.13936 -8.21596 -6.33113 -0.29665 0.04940 0.65747 1.37105 1.37915 1.42004 1.49923 1.50732 1.93849 2.39810 2.49761 3.10883 3.22649 3.37823 3.50059 3.69399 3.80847 4.05642 4.10675 4.20322 4.27022 4.36577 4.40598 4.48436 4.57860 4.66831 4.67641 4.71818 4.77586 4.88662 4.93120 4.99711 5.02144 5.05057 5.16308 5.19643 5.24377 5.48357 5.71456 5.82780 5.93080 5.95675 6.24460 6.40829 6.82001 6.82774 7.07526 7.35714 8.90292 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002159 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.979648 B =12963.915773 C =13458.574565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.496 3.504 3 O -0.540 6.540 4 N -0.506 5.506 5 C 0.238 3.762 6 N -0.514 5.514 7 C 0.077 3.923 8 C 0.136 3.864 9 N -0.691 5.691 10 C 0.075 3.925 11 C -0.091 4.091 12 C 0.026 3.974 13 C -0.546 4.546 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.282 4.282 22 S 0.213 5.787 23 C 0.025 3.975 24 C -0.179 4.179 25 C -0.151 4.151 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.043 0.957 36 H -0.011 1.011 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.203 0.797 40 H 0.166 0.834 41 H 0.087 0.913 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.658 -29.916 7.907 39.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.285 3.715 3 O -0.413 6.413 4 N -0.237 5.237 5 C -0.129 4.129 6 N -0.236 5.236 7 C -0.055 4.055 8 C 0.005 3.995 9 N -0.323 5.323 10 C -0.053 4.053 11 C -0.129 4.129 12 C -0.011 4.011 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.423 4.423 22 S 0.466 5.534 23 C -0.077 4.077 24 C -0.217 4.217 25 C -0.189 4.189 26 H 0.135 0.865 27 H 0.114 0.886 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.007 0.993 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.220 0.780 40 H 0.183 0.817 41 H 0.105 0.895 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.324 -29.330 7.884 39.544 hybrid contribution 2.085 1.465 -0.312 2.568 sum -23.239 -27.864 7.573 37.065 Atomic orbital electron populations 1.22061 0.85809 1.07091 1.06781 1.22301 0.92885 0.81850 0.74482 1.90879 1.71562 1.32331 1.46481 1.45180 1.00174 1.08956 1.69391 1.24221 0.91160 0.94221 1.03302 1.66289 1.05439 1.31619 1.20212 1.19913 0.89088 0.94576 1.01905 1.20359 0.94789 0.93421 0.90933 1.60319 1.47162 1.12388 1.12445 1.21829 0.92937 0.93086 0.97488 1.21359 0.98305 0.97811 0.95411 1.18959 0.93483 0.92948 0.95731 1.21653 1.26055 1.16842 0.93842 0.92404 1.26026 0.95731 0.96670 1.01559 1.70095 1.30764 1.24761 1.31707 0.85457 0.78214 0.78040 0.79077 1.19405 1.20510 1.18910 1.27185 1.05319 0.95430 1.14346 1.83303 0.94508 1.06307 1.69324 1.22559 1.02836 0.83944 0.98312 1.23595 0.98653 0.99118 1.00375 1.23582 0.97889 1.02425 0.94981 0.86540 0.88647 0.86173 0.91651 0.91170 0.83679 0.92584 0.94553 0.92711 0.93808 0.99295 0.98526 0.92680 0.78013 0.81742 0.89496 0.83504 0.82960 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.85 71.23 0.70 -1.01 16 2 C 0.50 11.91 7.65 87.66 0.67 12.58 16 3 O -0.54 -20.39 15.75 -3.04 -0.05 -20.44 16 4 N -0.51 -10.03 2.99 -621.27 -1.86 -11.89 16 5 C 0.24 6.08 7.49 179.21 1.34 7.43 16 6 N -0.51 -17.56 8.65 -189.59 -1.64 -19.20 16 7 C 0.08 2.29 6.25 41.45 0.26 2.55 16 8 C 0.14 4.23 6.12 85.56 0.52 4.75 16 9 N -0.69 -24.35 6.49 -517.95 -3.36 -27.71 16 10 C 0.08 2.96 5.69 86.30 0.49 3.45 16 11 C -0.09 -4.19 5.41 30.59 0.17 -4.03 16 12 C 0.03 1.50 4.97 29.85 0.15 1.65 16 13 C -0.55 -33.09 9.11 25.60 0.23 -32.86 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 16 N -0.93 -59.15 13.29 21.45 0.28 -58.86 16 17 Si 0.97 46.26 29.54 68.60 2.03 48.28 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.28 -5.99 11.09 66.73 0.74 -5.25 16 22 S 0.21 3.53 19.89 -56.49 -1.12 2.41 16 23 C 0.03 0.19 4.95 44.99 0.22 0.41 16 24 C -0.18 -0.92 8.72 30.59 0.27 -0.66 16 25 C -0.15 -0.49 8.39 30.59 0.26 -0.23 16 26 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.12 0.44 5.17 -2.39 -0.01 0.43 16 29 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.34 10.97 8.72 -89.69 -0.78 10.18 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 39 H 0.20 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.09 0.88 6.83 -2.39 -0.02 0.86 16 42 H 0.15 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.15 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -88.52 377.85 0.99 -87.53 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.22 Total: 10.76 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 6.48 Total: -10.88 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -6.57 Total: -117.67 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.12 Total: 2.41 kcal Total: -88.52 0.99 -87.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344258553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.807 kcal (2) G-P(sol) polarization free energy of solvation -88.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds