Wall clock time and date at job start Tue Mar 31 2020 13:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47189 * 2 1 4 4 C 1.36936 * 120.00272 * 264.45704 * 3 2 1 5 5 H 1.07992 * 120.00029 * 185.17060 * 4 3 2 6 6 C 1.39005 * 119.99695 * 5.17236 * 4 3 2 7 7 N 1.31392 * 120.00250 * 34.62400 * 6 4 3 8 8 Si 1.86803 * 119.99760 * 214.62657 * 6 4 3 9 9 H 1.48504 * 109.46834 * 94.99795 * 8 6 4 10 10 H 1.48496 * 109.47012 * 215.00069 * 8 6 4 11 11 H 1.48494 * 109.47106 * 335.00160 * 8 6 4 12 12 C 1.34776 * 120.00246 * 84.45396 * 3 2 1 13 13 O 1.21653 * 120.00675 * 185.72839 * 12 3 2 14 14 C 1.47208 * 119.99765 * 5.72647 * 12 3 2 15 15 C 1.39899 * 120.13823 * 54.98600 * 14 12 3 16 16 C 1.36549 * 120.07988 * 180.27695 * 15 14 12 17 17 C 1.39170 * 120.37599 * 359.97438 * 16 15 14 18 18 O 1.35722 * 119.85859 * 179.97438 * 17 16 15 19 19 C 1.42893 * 116.99612 * 0.02562 * 18 17 16 20 20 C 1.38724 * 120.28403 * 0.02562 * 17 16 15 21 21 C 1.38457 * 119.91431 * 359.97438 * 20 17 16 22 22 O 1.35661 * 120.19073 * 179.97438 * 21 20 17 23 23 C 1.42901 * 116.99449 * 0.02562 * 22 21 20 24 24 C 1.53005 * 109.46978 * 179.97438 * 23 22 21 25 25 O 1.42905 * 109.46714 * 64.99867 * 24 23 22 26 26 C 1.42898 * 113.99608 * 179.97438 * 25 24 23 27 27 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46781 * 299.99785 * 1 2 3 29 29 H 1.08994 * 109.47096 * 59.99844 * 1 2 3 30 30 H 1.08999 * 109.46781 * 240.00214 * 2 1 3 31 31 H 1.08994 * 109.47096 * 120.00156 * 2 1 3 32 32 H 0.96992 * 120.00518 * 180.02562 * 7 6 4 33 33 H 1.08004 * 119.95728 * 0.24660 * 15 14 12 34 34 H 1.07998 * 119.80617 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.46910 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47781 * 300.00080 * 19 18 17 37 37 H 1.09002 * 109.46870 * 60.00601 * 19 18 17 38 38 H 1.08004 * 120.04188 * 180.02562 * 20 17 16 39 39 H 1.08997 * 109.47179 * 299.99816 * 23 22 21 40 40 H 1.09001 * 109.47097 * 60.00428 * 23 22 21 41 41 H 1.09000 * 109.47019 * 185.00029 * 24 23 22 42 42 H 1.09002 * 109.47247 * 305.00498 * 24 23 22 43 43 H 1.08997 * 109.47314 * 60.00414 * 26 25 24 44 44 H 1.09005 * 109.46762 * 180.02562 * 26 25 24 45 45 H 1.08996 * 109.47448 * 300.00061 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3546 1.9886 -1.1803 5 1 2.7927 2.9756 -1.1740 6 6 2.1319 1.3346 -2.3866 7 7 1.0845 0.5538 -2.5270 8 14 3.3218 1.5658 -3.8079 9 1 4.3191 0.4655 -3.8024 10 1 2.5717 1.5477 -5.0893 11 1 4.0205 2.8679 -3.6616 12 6 2.1367 2.0541 1.1617 13 8 2.4417 3.2318 1.1542 14 6 1.8966 1.3642 2.4397 15 6 2.6047 0.1989 2.7526 16 6 2.3770 -0.4433 3.9360 17 6 1.4419 0.0547 4.8384 18 8 1.2236 -0.5924 6.0113 19 6 1.9886 -1.7751 6.2518 20 6 0.7312 1.2090 4.5438 21 6 0.9525 1.8697 3.3473 22 8 0.2603 2.9987 3.0532 23 6 -0.6839 3.4524 4.0253 24 6 -1.3610 4.7287 3.5217 25 8 -2.1320 4.4306 2.3559 26 6 -2.8098 5.5606 1.8029 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.9293 0.0972 -3.3685 33 1 3.3319 -0.1935 2.0571 34 1 2.9258 -1.3428 4.1728 35 1 1.7169 -2.1926 7.2214 36 1 1.7817 -2.5068 5.4708 37 1 3.0503 -1.5284 6.2466 38 1 0.0067 1.5923 5.2471 39 1 -1.4368 2.6812 4.1880 40 1 -0.1684 3.6607 4.9628 41 1 -2.0152 5.1239 4.2988 42 1 -0.6010 5.4701 3.2748 43 1 -2.0802 6.3195 1.5205 44 1 -3.3724 5.2513 0.9220 45 1 -3.4941 5.9726 2.5445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350030968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:50 Heat of formation + Delta-G solvation = -101.850801 kcal Electronic energy + Delta-G solvation = -28630.197985 eV Core-core repulsion = 24615.261058 eV Total energy + Delta-G solvation = -4014.936927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38437 -38.97065 -38.32177 -37.43627 -35.94044 -34.83346 -31.85531 -30.88072 -30.52291 -29.27485 -28.93067 -27.33880 -26.26270 -24.91005 -23.62527 -22.58520 -21.87062 -21.35405 -19.43378 -18.45582 -16.82864 -16.75511 -16.63783 -16.36531 -16.05483 -15.73221 -15.32149 -15.08058 -14.96956 -14.78045 -14.17440 -14.13326 -13.79230 -13.49435 -12.98420 -12.66695 -12.54358 -12.39181 -12.34238 -12.16244 -11.91015 -11.71048 -11.50322 -11.40952 -11.13197 -11.06409 -10.95477 -10.83624 -10.60178 -10.35116 -10.28202 -10.08488 -9.65686 -9.61049 -8.75871 -8.36612 -8.22972 -7.71859 -7.57281 -6.36548 -3.60416 1.54214 1.72036 3.19734 3.21728 3.31842 3.38013 3.49971 3.79231 3.81975 4.14095 4.29056 4.89017 4.94374 5.00010 5.07757 5.10089 5.12796 5.14310 5.23360 5.25741 5.32803 5.39516 5.39876 5.49314 5.53490 5.65688 5.74005 5.78316 5.81430 5.94104 6.26644 6.39405 6.51620 6.65264 6.69704 6.75548 6.86924 6.89926 7.20814 7.29358 7.42912 7.53917 7.75635 7.85010 8.21694 8.61898 9.29647 9.55075 10.16183 10.66595 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.005262 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.288991 B = 5319.515503 C = 7571.041784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.117 3.883 3 N -0.431 5.431 4 C -0.311 4.311 5 H 0.107 0.893 6 C 0.038 3.962 7 N -0.847 5.847 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.489 3.511 13 O -0.582 6.582 14 C -0.150 4.150 15 C -0.023 4.023 16 C -0.247 4.247 17 C 0.161 3.839 18 O -0.319 6.319 19 C 0.028 3.972 20 C -0.251 4.251 21 C 0.200 3.800 22 O -0.275 6.275 23 C 0.057 3.943 24 C 0.064 3.936 25 O -0.379 6.379 26 C 0.033 3.967 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.267 0.733 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.134 0.866 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -2.522 14.628 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 N -0.148 5.148 4 C -0.438 4.438 5 H 0.124 0.876 6 C -0.167 4.167 7 N -0.484 5.484 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.193 1.193 12 C 0.278 3.722 13 O -0.467 6.467 14 C -0.154 4.154 15 C -0.042 4.042 16 C -0.266 4.266 17 C 0.115 3.885 18 O -0.232 6.232 19 C -0.067 4.067 20 C -0.270 4.270 21 C 0.152 3.848 22 O -0.187 6.187 23 C -0.019 4.019 24 C -0.013 4.013 25 O -0.298 6.298 26 C -0.064 4.064 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.152 0.848 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.046 -2.067 14.339 15.042 hybrid contribution 0.434 -0.123 -0.489 0.665 sum -3.612 -2.190 13.850 14.480 Atomic orbital electron populations 1.22081 0.96556 0.99541 1.02495 1.21515 0.94811 0.83901 1.00474 1.43751 1.54764 1.11200 1.05128 1.19688 1.37984 1.03941 0.82184 0.87576 1.25131 0.95950 0.97306 0.98354 1.70227 1.21657 1.30289 1.26254 0.86237 0.81312 0.79101 0.80159 1.20478 1.21268 1.19273 1.17327 0.85629 0.86469 0.82808 1.90609 1.53813 1.15473 1.86795 1.19506 1.00268 0.98112 0.97523 1.20640 0.96521 0.91844 0.95159 1.20707 1.04558 1.04352 0.96990 1.18684 0.93621 0.91361 0.84788 1.85972 1.62290 1.39583 1.35403 1.23031 0.95807 0.85659 1.02180 1.20202 1.08301 0.99241 0.99278 1.18581 0.89756 0.85289 0.91172 1.86357 1.50574 1.38199 1.43531 1.22867 0.91146 0.96484 0.91396 1.22534 0.94173 0.96190 0.88378 1.88022 1.64946 1.33230 1.43558 1.22733 0.95931 0.89355 0.98359 0.94688 0.95471 0.88851 0.89260 0.93923 0.92287 0.84757 0.85475 0.88584 0.92505 0.92590 0.84846 0.91189 0.90559 0.91498 0.91825 0.93836 0.89505 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.78 37.16 0.36 -3.05 16 2 C 0.12 2.72 5.08 -4.04 -0.02 2.70 16 3 N -0.43 -11.50 2.63 -116.11 -0.31 -11.81 16 4 C -0.31 -8.87 9.36 -14.99 -0.14 -9.01 16 5 H 0.11 3.23 7.39 -52.49 -0.39 2.84 16 6 C 0.04 0.99 4.66 -17.46 -0.08 0.91 16 7 N -0.85 -22.18 9.15 55.50 0.51 -21.67 16 8 Si 0.91 20.54 29.67 -169.99 -5.04 15.50 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.49 13.03 6.68 -12.62 -0.08 12.94 16 13 O -0.58 -17.59 16.40 3.10 0.05 -17.54 16 14 C -0.15 -3.28 4.83 -104.83 -0.51 -3.79 16 15 C -0.02 -0.41 7.53 -39.57 -0.30 -0.71 16 16 C -0.25 -3.75 8.96 -39.85 -0.36 -4.10 16 17 C 0.16 2.49 6.69 -39.06 -0.26 2.23 16 18 O -0.32 -4.24 10.48 -18.87 -0.20 -4.44 16 19 C 0.03 0.25 9.80 101.05 0.99 1.24 16 20 C -0.25 -4.15 8.97 -39.32 -0.35 -4.51 16 21 C 0.20 4.02 6.69 -38.70 -0.26 3.76 16 22 O -0.28 -5.70 9.33 -30.94 -0.29 -5.99 16 23 C 0.06 0.83 5.12 37.16 0.19 1.02 16 24 C 0.06 0.87 6.32 37.16 0.23 1.11 16 25 O -0.38 -6.31 10.67 -40.09 -0.43 -6.73 16 26 C 0.03 0.41 11.01 101.05 1.11 1.52 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.09 2.41 6.32 -51.93 -0.33 2.08 16 30 H 0.09 2.18 5.99 -51.93 -0.31 1.87 16 31 H 0.04 0.88 4.54 -51.93 -0.24 0.64 16 32 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 33 H 0.13 2.30 7.38 -52.48 -0.39 1.91 16 34 H 0.13 1.51 6.26 -52.49 -0.33 1.18 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 38 H 0.13 1.87 6.31 -52.48 -0.33 1.54 16 39 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 40 H 0.08 0.90 7.66 -51.93 -0.40 0.50 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -34.93 369.25 -6.02 -40.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.41 Total: 3.90 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 0.53 Total: 2.28 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.20 Total: -33.48 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.86 Total: -34.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.93 -6.02 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350030968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.907 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds