Wall clock time and date at job start Tue Mar 31 2020 13:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47189 * 2 1 4 4 C 1.36936 * 120.00272 * 264.45704 * 3 2 1 5 5 H 1.07992 * 120.00029 * 185.17060 * 4 3 2 6 6 C 1.39005 * 119.99695 * 5.17236 * 4 3 2 7 7 N 1.31392 * 120.00250 * 34.62400 * 6 4 3 8 8 Si 1.86803 * 119.99760 * 214.62657 * 6 4 3 9 9 H 1.48504 * 109.46834 * 94.99795 * 8 6 4 10 10 H 1.48496 * 109.47012 * 215.00069 * 8 6 4 11 11 H 1.48494 * 109.47106 * 335.00160 * 8 6 4 12 12 C 1.34776 * 120.00246 * 84.45396 * 3 2 1 13 13 O 1.21653 * 120.00675 * 185.72839 * 12 3 2 14 14 C 1.47208 * 119.99765 * 5.72647 * 12 3 2 15 15 C 1.39899 * 120.13823 * 54.98600 * 14 12 3 16 16 C 1.36549 * 120.07988 * 180.27695 * 15 14 12 17 17 C 1.39170 * 120.37599 * 359.97438 * 16 15 14 18 18 O 1.35722 * 119.85859 * 179.97438 * 17 16 15 19 19 C 1.42893 * 116.99612 * 0.02562 * 18 17 16 20 20 C 1.38724 * 120.28403 * 0.02562 * 17 16 15 21 21 C 1.38457 * 119.91431 * 359.97438 * 20 17 16 22 22 O 1.35661 * 120.19073 * 179.97438 * 21 20 17 23 23 C 1.42901 * 116.99449 * 0.02562 * 22 21 20 24 24 C 1.53005 * 109.46978 * 179.97438 * 23 22 21 25 25 O 1.42905 * 109.46714 * 64.99867 * 24 23 22 26 26 C 1.42898 * 113.99608 * 179.97438 * 25 24 23 27 27 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46781 * 299.99785 * 1 2 3 29 29 H 1.08994 * 109.47096 * 59.99844 * 1 2 3 30 30 H 1.08999 * 109.46781 * 240.00214 * 2 1 3 31 31 H 1.08994 * 109.47096 * 120.00156 * 2 1 3 32 32 H 0.96992 * 120.00518 * 180.02562 * 7 6 4 33 33 H 1.08004 * 119.95728 * 0.24660 * 15 14 12 34 34 H 1.07998 * 119.80617 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.46910 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47781 * 300.00080 * 19 18 17 37 37 H 1.09002 * 109.46870 * 60.00601 * 19 18 17 38 38 H 1.08004 * 120.04188 * 180.02562 * 20 17 16 39 39 H 1.08997 * 109.47179 * 299.99816 * 23 22 21 40 40 H 1.09001 * 109.47097 * 60.00428 * 23 22 21 41 41 H 1.09000 * 109.47019 * 185.00029 * 24 23 22 42 42 H 1.09002 * 109.47247 * 305.00498 * 24 23 22 43 43 H 1.08997 * 109.47314 * 60.00414 * 26 25 24 44 44 H 1.09005 * 109.46762 * 180.02562 * 26 25 24 45 45 H 1.08996 * 109.47448 * 300.00061 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3546 1.9886 -1.1803 5 1 2.7927 2.9756 -1.1740 6 6 2.1319 1.3346 -2.3866 7 7 1.0845 0.5538 -2.5270 8 14 3.3218 1.5658 -3.8079 9 1 4.3191 0.4655 -3.8024 10 1 2.5717 1.5477 -5.0893 11 1 4.0205 2.8679 -3.6616 12 6 2.1367 2.0541 1.1617 13 8 2.4417 3.2318 1.1542 14 6 1.8966 1.3642 2.4397 15 6 2.6047 0.1989 2.7526 16 6 2.3770 -0.4433 3.9360 17 6 1.4419 0.0547 4.8384 18 8 1.2236 -0.5924 6.0113 19 6 1.9886 -1.7751 6.2518 20 6 0.7312 1.2090 4.5438 21 6 0.9525 1.8697 3.3473 22 8 0.2603 2.9987 3.0532 23 6 -0.6839 3.4524 4.0253 24 6 -1.3610 4.7287 3.5217 25 8 -2.1320 4.4306 2.3559 26 6 -2.8098 5.5606 1.8029 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.9293 0.0972 -3.3685 33 1 3.3319 -0.1935 2.0571 34 1 2.9258 -1.3428 4.1728 35 1 1.7169 -2.1926 7.2214 36 1 1.7817 -2.5068 5.4708 37 1 3.0503 -1.5284 6.2466 38 1 0.0067 1.5923 5.2471 39 1 -1.4368 2.6812 4.1880 40 1 -0.1684 3.6607 4.9628 41 1 -2.0152 5.1239 4.2988 42 1 -0.6010 5.4701 3.2748 43 1 -2.0802 6.3195 1.5205 44 1 -3.3724 5.2513 0.9220 45 1 -3.4941 5.9726 2.5445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350030968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:49 Heat of formation + Delta-G solvation = -126.126916 kcal Electronic energy + Delta-G solvation = -28631.250677 eV Core-core repulsion = 24615.261058 eV Total energy + Delta-G solvation = -4015.989618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74127 -40.23165 -39.98534 -38.66218 -37.27661 -36.89396 -33.86100 -32.04938 -31.87063 -31.20329 -30.28442 -28.23976 -27.31964 -26.81999 -24.90892 -24.19598 -23.51262 -22.60806 -21.13165 -19.70718 -18.77059 -18.16293 -17.90490 -17.79735 -17.35474 -16.84934 -16.68202 -16.42930 -16.17459 -16.15408 -15.95030 -15.54529 -15.41511 -14.96458 -14.66147 -14.41155 -14.00654 -13.67213 -13.62787 -13.41796 -13.29594 -13.18462 -12.97949 -12.85710 -12.64549 -12.51968 -12.39443 -12.15302 -12.13200 -12.02187 -11.88767 -11.73097 -11.38010 -10.79301 -10.70037 -10.30397 -9.78577 -9.57522 -8.98899 -8.40782 -5.75031 0.16509 0.39842 1.36254 1.43604 1.56034 2.05091 2.11030 2.30252 2.39857 2.66394 2.78900 3.04596 3.21217 3.73126 3.88733 3.95603 4.07252 4.08254 4.19436 4.26293 4.36554 4.43070 4.46182 4.46783 4.49191 4.49395 4.52651 4.56447 4.71332 4.76718 4.79901 4.83597 4.87946 4.97773 5.10349 5.24565 5.34982 5.37281 5.46631 5.54001 5.85084 6.08474 6.16869 6.33646 6.49185 6.58735 7.22744 7.52739 8.14776 8.61519 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.005262 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.288991 B = 5319.515503 C = 7571.041784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.121 3.879 3 N -0.440 5.440 4 C -0.362 4.362 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.854 5.854 8 Si 0.974 3.026 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.480 3.520 13 O -0.639 6.639 14 C -0.194 4.194 15 C -0.023 4.023 16 C -0.233 4.233 17 C 0.177 3.823 18 O -0.322 6.322 19 C 0.014 3.986 20 C -0.250 4.250 21 C 0.187 3.813 22 O -0.320 6.320 23 C 0.047 3.953 24 C 0.060 3.940 25 O -0.421 6.421 26 C 0.027 3.973 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.276 0.724 33 H 0.139 0.861 34 H 0.168 0.832 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.159 0.841 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.048 0.952 43 H 0.038 0.962 44 H 0.086 0.914 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -5.183 16.728 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.002 4.002 3 N -0.157 5.157 4 C -0.489 4.489 5 H 0.086 0.914 6 C -0.190 4.190 7 N -0.490 5.490 8 Si 0.797 3.203 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.270 3.730 13 O -0.528 6.528 14 C -0.198 4.198 15 C -0.042 4.042 16 C -0.252 4.252 17 C 0.131 3.869 18 O -0.235 6.235 19 C -0.080 4.080 20 C -0.269 4.269 21 C 0.139 3.861 22 O -0.233 6.233 23 C -0.028 4.028 24 C -0.016 4.016 25 O -0.341 6.341 26 C -0.069 4.069 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.383 -4.782 16.450 17.683 hybrid contribution 0.454 0.641 -1.000 1.272 sum -3.929 -4.140 15.450 16.471 Atomic orbital electron populations 1.21908 0.96295 1.00827 1.00296 1.21575 0.94902 0.82424 1.01269 1.43924 1.54679 1.12287 1.04780 1.19491 1.41293 1.03934 0.84190 0.91365 1.25829 0.96597 0.96568 0.99968 1.70274 1.21575 1.29822 1.27336 0.85252 0.79112 0.78772 0.77136 1.18726 1.19878 1.20561 1.18142 0.84236 0.86131 0.84453 1.90530 1.56161 1.18134 1.87981 1.19302 1.03842 1.00486 0.96197 1.20704 0.96098 0.90817 0.96604 1.21019 1.04033 1.04890 0.95252 1.18785 0.92232 0.90615 0.85314 1.85998 1.62882 1.40876 1.33745 1.23462 0.96201 0.84176 1.04176 1.20368 1.08820 0.99450 0.98263 1.18748 0.89759 0.85572 0.92007 1.86309 1.51808 1.38841 1.46305 1.23282 0.90779 0.97104 0.91599 1.22767 0.94418 0.95560 0.88812 1.87956 1.65689 1.35395 1.45059 1.22897 0.96183 0.88378 0.99401 0.91480 0.96474 0.92101 0.90400 0.90894 0.91339 0.84359 0.81454 0.85764 0.91343 0.91344 0.82367 0.90073 0.87605 0.86836 0.93347 0.94336 0.89559 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 9.78 71.98 0.70 -5.58 16 2 C 0.12 5.75 5.08 86.38 0.44 6.19 16 3 N -0.44 -24.78 2.63 -639.49 -1.68 -26.47 16 4 C -0.36 -21.96 9.36 84.08 0.79 -21.17 16 5 H 0.07 4.55 7.39 -2.91 -0.02 4.53 16 6 C 0.02 0.85 4.66 84.94 0.40 1.25 16 7 N -0.85 -45.29 9.15 21.67 0.20 -45.09 16 8 Si 0.97 42.98 29.67 68.60 2.04 45.01 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 C 0.48 27.25 6.68 86.60 0.58 27.83 16 13 O -0.64 -41.96 16.40 -2.16 -0.04 -41.99 16 14 C -0.19 -8.75 4.83 -20.00 -0.10 -8.85 16 15 C -0.02 -0.83 7.53 22.28 0.17 -0.66 16 16 C -0.23 -6.32 8.96 22.10 0.20 -6.12 16 17 C 0.18 4.90 6.69 22.61 0.15 5.05 16 18 O -0.32 -7.14 10.48 -90.45 -0.95 -8.09 16 19 C 0.01 0.18 9.80 113.37 1.11 1.29 16 20 C -0.25 -7.83 8.97 22.44 0.20 -7.63 16 21 C 0.19 7.63 6.69 22.84 0.15 7.78 16 22 O -0.32 -13.85 9.33 -78.05 -0.73 -14.58 16 23 C 0.05 1.36 5.12 71.98 0.37 1.73 16 24 C 0.06 1.65 6.32 71.98 0.45 2.11 16 25 O -0.42 -14.44 10.67 -144.34 -1.54 -15.98 16 26 C 0.03 0.69 11.01 113.37 1.25 1.94 16 27 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.02 0.79 8.01 -2.39 -0.02 0.77 16 29 H 0.06 3.23 6.32 -2.39 -0.02 3.21 16 30 H 0.08 3.84 5.99 -2.39 -0.01 3.82 16 31 H 0.07 2.98 4.54 -2.39 -0.01 2.97 16 32 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.14 4.64 7.38 -2.91 -0.02 4.62 16 34 H 0.17 3.12 6.26 -2.91 -0.02 3.11 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 37 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 38 H 0.16 4.01 6.31 -2.91 -0.02 3.99 16 39 H 0.08 2.12 7.66 -2.39 -0.02 2.10 16 40 H 0.11 2.35 7.66 -2.39 -0.02 2.33 16 41 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -83.44 369.25 5.16 -78.28 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 1.00 Total: 23.74 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.86 Total: 5.16 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.48 Total: -71.56 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -3.25 Total: -80.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.04 Total: 45.01 kcal Total: -83.44 5.16 -78.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350030968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.848 kcal (2) G-P(sol) polarization free energy of solvation -83.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds