Wall clock time and date at job start Tue Mar 31 2020 13:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.80995 * 109.47127 * 2 1 4 4 C 1.76198 * 99.99911 * 180.02562 * 3 2 1 5 5 N 1.32913 * 120.17686 * 0.02562 * 4 3 2 6 6 C 1.31996 * 119.97729 * 179.97438 * 5 4 3 7 7 C 1.38835 * 120.33957 * 0.02562 * 6 5 4 8 8 N 1.31727 * 120.35228 * 359.97438 * 7 6 5 9 9 C 1.33012 * 120.01950 * 359.97438 * 8 7 6 10 10 C 1.47700 * 120.16860 * 179.97438 * 9 8 7 11 11 O 1.21574 * 120.00232 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99673 * 0.04235 * 10 9 8 13 13 C 1.46498 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47186 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46990 * 300.00140 * 14 13 12 16 16 C 1.53000 * 109.46809 * 59.99842 * 14 13 12 17 17 C 1.52998 * 109.47352 * 179.97438 * 14 13 12 18 18 C 1.50697 * 109.46968 * 180.02562 * 17 14 13 19 19 H 1.07999 * 120.00217 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99847 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00146 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00068 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46970 * 89.99753 * 22 20 18 24 24 H 1.48498 * 109.47339 * 209.99964 * 22 20 18 25 25 H 1.48503 * 109.46907 * 330.00208 * 22 20 18 26 26 H 1.09000 * 109.47662 * 59.99183 * 1 2 3 27 27 H 1.09002 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47185 * 299.99497 * 1 2 3 29 29 H 1.08997 * 109.46472 * 240.00434 * 2 1 3 30 30 H 1.08996 * 109.46954 * 120.00894 * 2 1 3 31 31 H 1.08000 * 119.83458 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.82657 * 179.70082 * 7 6 5 33 33 H 0.96997 * 120.00014 * 0.02562 * 12 10 9 34 34 H 1.08997 * 109.47036 * 299.99923 * 13 12 10 35 35 H 1.08997 * 109.47075 * 59.99892 * 13 12 10 36 36 H 1.09000 * 109.47222 * 59.99559 * 15 14 13 37 37 H 1.09007 * 109.47065 * 179.97438 * 15 14 13 38 38 H 1.08995 * 109.47296 * 299.99368 * 15 14 13 39 39 H 1.09005 * 109.47451 * 60.00105 * 16 14 13 40 40 H 1.08997 * 109.47255 * 180.02562 * 16 14 13 41 41 H 1.09008 * 109.47242 * 300.00011 * 16 14 13 42 42 H 1.08997 * 109.47201 * 300.00264 * 17 14 13 43 43 H 1.08997 * 109.46743 * 60.00132 * 17 14 13 44 44 H 0.96997 * 120.00297 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7064 0.0000 4 6 3.8713 1.4165 -0.0008 5 7 4.3412 0.1732 -0.0017 6 6 5.6439 -0.0395 -0.0028 7 6 6.5291 1.0300 -0.0024 8 7 6.0778 2.2676 -0.0016 9 6 4.7678 2.4982 -0.0015 10 6 4.2582 3.8845 0.0001 11 8 3.0603 4.0918 0.0006 12 7 5.1213 4.9197 0.0006 13 6 4.6158 6.2947 0.0027 14 6 5.7937 7.2712 0.0035 15 6 6.6472 7.0396 1.2520 16 6 6.6460 7.0430 -1.2465 17 6 5.2658 8.7072 0.0050 18 6 6.4261 9.6689 0.0052 19 1 7.4387 9.2934 0.0047 20 6 6.1948 11.0281 0.0070 21 7 4.9618 11.4854 0.0092 22 14 7.6330 12.2202 0.0079 23 1 8.0135 12.5379 -1.3919 24 1 7.2407 13.4687 0.7097 25 1 8.7882 11.6017 0.7066 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 6.0232 -1.0507 -0.0039 32 1 7.5933 0.8465 0.0015 33 1 6.0770 4.7543 -0.0005 34 1 4.0074 6.4595 -0.8865 35 1 4.0089 6.4574 0.8934 36 1 7.0233 6.0165 1.2504 37 1 7.4867 7.7350 1.2523 38 1 6.0401 7.2022 2.1425 39 1 6.0380 7.2079 -2.1360 40 1 7.4855 7.7383 -1.2458 41 1 7.0222 6.0199 -1.2480 42 1 4.6580 8.8718 -0.8846 43 1 4.6584 8.8700 0.8953 44 1 4.7991 12.4416 0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:13 Heat of formation + Delta-G solvation = -6.428788 kcal Electronic energy + Delta-G solvation = -24674.091692 eV Core-core repulsion = 21138.338196 eV Total energy + Delta-G solvation = -3535.753496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37086 -39.37579 -37.12749 -34.86155 -33.59405 -32.94203 -32.19048 -31.82558 -27.28749 -26.72799 -26.48195 -25.35192 -25.06773 -23.55664 -22.78313 -20.75517 -18.89232 -18.17360 -18.07000 -17.32349 -16.29567 -15.85394 -15.84216 -15.56919 -15.08192 -14.98511 -14.56964 -14.49084 -14.26104 -13.51685 -13.50155 -13.05974 -12.75011 -12.69521 -12.17197 -12.13363 -12.05266 -11.98064 -11.95579 -11.54522 -11.15068 -11.03757 -10.99731 -10.82847 -10.61932 -10.39826 -10.24380 -10.23042 -9.86457 -9.81256 -9.42306 -9.13013 -8.91421 -8.82505 -8.34704 -7.78159 -5.98802 -3.99873 0.04726 0.61475 1.23057 2.05955 2.62763 3.11562 3.31949 3.38973 3.40934 3.48372 3.78983 3.93654 4.20411 4.46471 4.69589 4.72091 4.72245 4.79501 4.96933 5.16149 5.36804 5.49783 5.53539 5.54817 5.62922 5.77009 5.79552 5.81593 6.20442 6.24089 6.26893 6.40831 6.52168 6.65741 6.67088 6.75145 7.07601 7.09191 7.12850 7.19222 7.64758 7.67941 7.77477 7.99979 8.23282 8.42211 9.04834 9.63144 11.12689 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002625 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.791266 B =10663.247739 C =11688.077505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 S 0.077 5.923 4 C 0.096 3.904 5 N -0.451 5.451 6 C 0.092 3.908 7 C 0.032 3.968 8 N -0.392 5.392 9 C 0.041 3.959 10 C 0.561 3.439 11 O -0.510 6.510 12 N -0.694 5.694 13 C 0.125 3.875 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -26.050 -0.019 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.311 4.311 3 S 0.320 5.680 4 C -0.155 4.155 5 N -0.170 5.170 6 C -0.074 4.074 7 C -0.135 4.135 8 N -0.109 5.109 9 C -0.108 4.108 10 C 0.344 3.656 11 O -0.388 6.388 12 N -0.345 5.345 13 C 0.003 3.997 14 C -0.072 4.072 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.194 0.806 32 H 0.195 0.805 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.603 -24.638 -0.010 24.775 hybrid contribution 2.233 -0.686 -0.012 2.336 sum -0.370 -25.323 -0.022 25.326 Atomic orbital electron populations 1.21498 0.92342 1.02670 1.03082 1.23852 1.00078 1.00916 1.06230 1.87444 0.89270 1.04791 1.86461 1.24512 1.02328 0.91602 0.97020 1.68983 1.15785 1.19582 1.12650 1.24046 0.89222 1.01587 0.92593 1.23747 1.02258 0.88037 0.99420 1.68334 1.13243 1.23833 1.05536 1.21883 0.89680 0.95205 1.04063 1.17503 0.86392 0.83295 0.78454 1.90735 1.14345 1.83273 1.50410 1.46026 1.10474 1.06209 1.71802 1.21770 0.97476 0.78240 1.02215 1.20908 0.93536 0.97560 0.95216 1.21774 1.00551 0.99037 0.97209 1.21777 1.00553 0.99039 0.97204 1.19094 0.96426 0.87074 0.97544 1.21179 0.92823 0.90642 1.50209 0.92241 1.25012 0.95380 0.98536 0.95580 1.69960 1.18949 1.13595 1.50903 0.86650 0.82857 0.80799 0.78013 1.20788 1.21358 1.19950 0.91728 0.91176 0.91724 0.89387 0.89387 0.80567 0.80487 0.75386 0.91307 0.91314 0.95103 0.91358 0.93346 0.93342 0.91364 0.95105 0.96276 0.96266 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.16 -1.52 5.57 37.16 0.21 -1.31 16 3 S 0.08 0.99 18.97 -107.50 -2.04 -1.05 16 4 C 0.10 1.25 7.01 -16.23 -0.11 1.14 16 5 N -0.45 -4.92 9.32 -11.48 -0.11 -5.03 16 6 C 0.09 0.72 11.22 -17.26 -0.19 0.52 16 7 C 0.03 0.27 11.21 -17.38 -0.19 0.07 16 8 N -0.39 -4.71 9.70 -9.48 -0.09 -4.80 16 9 C 0.04 0.58 6.77 -82.64 -0.56 0.02 16 10 C 0.56 9.05 7.79 -12.39 -0.10 8.95 16 11 O -0.51 -9.27 13.77 5.30 0.07 -9.20 16 12 N -0.69 -10.89 4.95 -61.30 -0.30 -11.19 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 14 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 16 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 17 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 18 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.81 8.13 -51.92 -0.42 0.39 16 30 H 0.09 0.81 8.13 -51.92 -0.42 0.39 16 31 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.41 5.91 5.51 -40.82 -0.22 5.69 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 37 H 0.07 1.31 6.62 -51.92 -0.34 0.96 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 41 H 0.03 0.46 6.86 -51.92 -0.36 0.11 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -31.46 370.79 -8.28 -39.74 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.55 Total: 1.49 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.56 Total: -6.08 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.23 Total: -46.68 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.04 Total: -1.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.46 -8.28 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.312 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds