Wall clock time and date at job start Tue Mar 31 2020 13:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.80995 * 109.47127 * 2 1 4 4 C 1.76198 * 99.99911 * 180.02562 * 3 2 1 5 5 N 1.32913 * 120.17686 * 0.02562 * 4 3 2 6 6 C 1.31996 * 119.97729 * 179.97438 * 5 4 3 7 7 C 1.38835 * 120.33957 * 0.02562 * 6 5 4 8 8 N 1.31727 * 120.35228 * 359.97438 * 7 6 5 9 9 C 1.33012 * 120.01950 * 359.97438 * 8 7 6 10 10 C 1.47700 * 120.16860 * 179.97438 * 9 8 7 11 11 O 1.21574 * 120.00232 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99673 * 0.04235 * 10 9 8 13 13 C 1.46498 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47186 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46990 * 300.00140 * 14 13 12 16 16 C 1.53000 * 109.46809 * 59.99842 * 14 13 12 17 17 C 1.52998 * 109.47352 * 179.97438 * 14 13 12 18 18 C 1.50697 * 109.46968 * 180.02562 * 17 14 13 19 19 H 1.07999 * 120.00217 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99847 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00146 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00068 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46970 * 89.99753 * 22 20 18 24 24 H 1.48498 * 109.47339 * 209.99964 * 22 20 18 25 25 H 1.48503 * 109.46907 * 330.00208 * 22 20 18 26 26 H 1.09000 * 109.47662 * 59.99183 * 1 2 3 27 27 H 1.09002 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47185 * 299.99497 * 1 2 3 29 29 H 1.08997 * 109.46472 * 240.00434 * 2 1 3 30 30 H 1.08996 * 109.46954 * 120.00894 * 2 1 3 31 31 H 1.08000 * 119.83458 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.82657 * 179.70082 * 7 6 5 33 33 H 0.96997 * 120.00014 * 0.02562 * 12 10 9 34 34 H 1.08997 * 109.47036 * 299.99923 * 13 12 10 35 35 H 1.08997 * 109.47075 * 59.99892 * 13 12 10 36 36 H 1.09000 * 109.47222 * 59.99559 * 15 14 13 37 37 H 1.09007 * 109.47065 * 179.97438 * 15 14 13 38 38 H 1.08995 * 109.47296 * 299.99368 * 15 14 13 39 39 H 1.09005 * 109.47451 * 60.00105 * 16 14 13 40 40 H 1.08997 * 109.47255 * 180.02562 * 16 14 13 41 41 H 1.09008 * 109.47242 * 300.00011 * 16 14 13 42 42 H 1.08997 * 109.47201 * 300.00264 * 17 14 13 43 43 H 1.08997 * 109.46743 * 60.00132 * 17 14 13 44 44 H 0.96997 * 120.00297 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7064 0.0000 4 6 3.8713 1.4165 -0.0008 5 7 4.3412 0.1732 -0.0017 6 6 5.6439 -0.0395 -0.0028 7 6 6.5291 1.0300 -0.0024 8 7 6.0778 2.2676 -0.0016 9 6 4.7678 2.4982 -0.0015 10 6 4.2582 3.8845 0.0001 11 8 3.0603 4.0918 0.0006 12 7 5.1213 4.9197 0.0006 13 6 4.6158 6.2947 0.0027 14 6 5.7937 7.2712 0.0035 15 6 6.6472 7.0396 1.2520 16 6 6.6460 7.0430 -1.2465 17 6 5.2658 8.7072 0.0050 18 6 6.4261 9.6689 0.0052 19 1 7.4387 9.2934 0.0047 20 6 6.1948 11.0281 0.0070 21 7 4.9618 11.4854 0.0092 22 14 7.6330 12.2202 0.0079 23 1 8.0135 12.5379 -1.3919 24 1 7.2407 13.4687 0.7097 25 1 8.7882 11.6017 0.7066 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 6.0232 -1.0507 -0.0039 32 1 7.5933 0.8465 0.0015 33 1 6.0770 4.7543 -0.0005 34 1 4.0074 6.4595 -0.8865 35 1 4.0089 6.4574 0.8934 36 1 7.0233 6.0165 1.2504 37 1 7.4867 7.7350 1.2523 38 1 6.0401 7.2022 2.1425 39 1 6.0380 7.2079 -2.1360 40 1 7.4855 7.7383 -1.2458 41 1 7.0222 6.0199 -1.2480 42 1 4.6580 8.8718 -0.8846 43 1 4.6584 8.8700 0.8953 44 1 4.7991 12.4416 0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359761888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:12 Heat of formation + Delta-G solvation = -26.918965 kcal Electronic energy + Delta-G solvation = -24674.980213 eV Core-core repulsion = 21138.338196 eV Total energy + Delta-G solvation = -3536.642016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23145 -40.60434 -38.66799 -35.76932 -35.14556 -33.94614 -33.60366 -32.77545 -29.16228 -28.09234 -27.97224 -26.41845 -25.92055 -24.84482 -24.06880 -21.98147 -20.23808 -19.22454 -18.88963 -18.51791 -18.30328 -16.92153 -16.89218 -16.60099 -16.39051 -15.96653 -15.91221 -15.52097 -15.36117 -14.95369 -14.78219 -14.45736 -14.22443 -13.93800 -13.78201 -13.41548 -12.87482 -12.84005 -12.75873 -12.75067 -12.71796 -12.60223 -12.33644 -12.27132 -12.23118 -12.03562 -11.98134 -11.54674 -11.05084 -11.02280 -10.86967 -10.71645 -10.49905 -10.23004 -10.17191 -8.73191 -8.12620 -6.20162 -0.79635 -0.15448 0.35657 1.26439 1.43518 1.43915 1.54293 1.59687 1.95607 2.45666 2.58752 2.94078 3.21872 3.24717 3.30138 3.89889 3.99025 4.01603 4.02885 4.07192 4.09552 4.22016 4.34842 4.54445 4.68702 4.71092 4.75801 4.88661 4.89345 4.95635 5.07739 5.11949 5.16274 5.20213 5.33609 5.44410 5.49799 5.52012 5.57513 5.80046 5.90609 5.91592 6.28285 6.34376 6.56304 6.94602 7.03365 7.47320 8.99937 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002625 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.791266 B =10663.247739 C =11688.077505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 S 0.011 5.989 4 C 0.089 3.911 5 N -0.461 5.461 6 C 0.111 3.889 7 C 0.046 3.954 8 N -0.409 5.409 9 C 0.011 3.989 10 C 0.557 3.443 11 O -0.541 6.541 12 N -0.688 5.688 13 C 0.140 3.860 14 C -0.063 4.063 15 C -0.122 4.122 16 C -0.122 4.122 17 C 0.040 3.960 18 C -0.513 4.513 19 H 0.072 0.928 20 C -0.005 4.005 21 N -0.938 5.938 22 Si 0.958 3.042 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.260 1.260 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.225 0.775 33 H 0.416 0.584 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.064 0.936 42 H -0.012 1.012 43 H -0.012 1.012 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -29.359 -0.018 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.288 4.288 3 S 0.255 5.745 4 C -0.159 4.159 5 N -0.180 5.180 6 C -0.057 4.057 7 C -0.123 4.123 8 N -0.126 5.126 9 C -0.136 4.136 10 C 0.342 3.658 11 O -0.419 6.419 12 N -0.340 5.340 13 C 0.016 3.984 14 C -0.064 4.064 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.003 3.997 18 C -0.551 4.551 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.184 1.184 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.245 0.755 32 H 0.241 0.759 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.387 -27.940 -0.010 27.943 hybrid contribution 1.362 0.105 -0.013 1.366 sum 1.749 -27.835 -0.023 27.890 Atomic orbital electron populations 1.21538 0.91116 1.04006 1.02809 1.23786 1.00861 0.97777 1.06404 1.87587 0.91203 1.08744 1.86999 1.24312 1.01603 0.92275 0.97753 1.69047 1.17616 1.18259 1.13079 1.24982 0.87868 1.03891 0.88960 1.24629 1.04497 0.86707 0.96466 1.68312 1.12009 1.26021 1.06249 1.21377 0.90900 0.93751 1.07562 1.17913 0.85999 0.84420 0.77462 1.90729 1.15645 1.84209 1.51362 1.45789 1.10807 1.05053 1.72335 1.21364 0.96576 0.79607 1.00858 1.20701 0.94235 0.94418 0.97011 1.21693 0.99592 1.00790 0.95826 1.21698 0.99609 1.00808 0.95805 1.18966 0.95434 0.90741 0.94574 1.21579 0.93737 0.91038 1.48706 0.90976 1.25941 0.97985 1.00764 0.95505 1.70118 1.21364 1.13865 1.52604 0.85544 0.79723 0.78157 0.78214 1.20166 1.21579 1.18374 0.92053 0.88813 0.92048 0.89074 0.89073 0.75518 0.75893 0.74465 0.92810 0.92817 0.91758 0.92330 0.94262 0.94265 0.92289 0.91763 0.99341 0.99328 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.92 71.98 0.71 -1.24 16 2 C -0.14 -2.51 5.57 71.98 0.40 -2.11 16 3 S 0.01 0.29 18.97 -56.49 -1.07 -0.78 16 4 C 0.09 2.27 7.01 85.08 0.60 2.87 16 5 N -0.46 -8.87 9.32 -190.22 -1.77 -10.64 16 6 C 0.11 1.20 11.22 84.81 0.95 2.15 16 7 C 0.05 0.54 11.21 84.85 0.95 1.50 16 8 N -0.41 -8.73 9.70 -183.89 -1.78 -10.51 16 9 C 0.01 0.30 6.77 42.02 0.28 0.58 16 10 C 0.56 18.44 7.79 86.74 0.68 19.12 16 11 O -0.54 -20.80 13.77 -3.95 -0.05 -20.86 16 12 N -0.69 -21.65 4.95 -466.11 -2.31 -23.95 16 13 C 0.14 5.18 4.56 86.38 0.39 5.58 16 14 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 15 C -0.12 -4.28 8.05 71.98 0.58 -3.70 16 16 C -0.12 -4.28 8.05 71.98 0.58 -3.70 16 17 C 0.04 2.08 4.04 29.85 0.12 2.20 16 18 C -0.51 -27.63 7.65 25.60 0.20 -27.43 16 19 H 0.07 3.64 5.68 -2.91 -0.02 3.63 16 20 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 21 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 22 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.56 8.13 -2.40 -0.02 1.54 16 30 H 0.09 1.56 8.13 -2.40 -0.02 1.54 16 31 H 0.23 0.06 8.06 -2.91 -0.02 0.03 16 32 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16 33 H 0.42 11.46 5.51 -92.71 -0.51 10.95 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 37 H 0.06 2.17 6.62 -2.38 -0.02 2.15 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16 40 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 41 H 0.06 1.81 6.86 -2.38 -0.02 1.80 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -73.00 370.79 2.70 -70.31 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.50 Total: 14.14 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 6.88 Total: -6.50 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -5.58 Total: -102.14 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.07 Total: -0.78 kcal Total: -73.00 2.70 -70.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.387 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds