Wall clock time and date at job start Tue Mar 31 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36008 * 116.99990 * 2 1 4 4 C 1.38683 * 120.04185 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.08722 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.18096 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.95821 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47288 * 260.02473 * 7 6 5 9 9 C 1.34780 * 119.99960 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99992 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99770 * 179.97438 * 9 8 7 12 12 C 1.53003 * 109.46989 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46989 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00398 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99604 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00353 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99889 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46883 * 60.00151 * 17 15 13 19 19 H 1.48494 * 109.47078 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46973 * 300.00279 * 17 15 13 21 21 C 1.38646 * 120.08758 * 0.02562 * 6 5 4 22 22 O 1.36000 * 120.04537 * 179.97438 * 21 6 5 23 23 C 1.42897 * 116.99998 * 264.27150 * 22 21 6 24 24 C 1.38956 * 120.04556 * 180.29105 * 3 2 1 25 25 O 1.36101 * 120.09093 * 0.03280 * 24 3 2 26 26 C 1.42898 * 116.99385 * 271.19365 * 25 24 3 27 27 H 1.08996 * 109.47025 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.46565 * 59.99890 * 1 2 3 29 29 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.95531 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.91034 * 179.97438 * 5 4 3 32 32 H 1.09006 * 109.46951 * 20.02283 * 7 6 5 33 33 H 1.09001 * 109.47094 * 140.02034 * 7 6 5 34 34 H 0.96997 * 120.00113 * 359.97438 * 8 7 6 35 35 H 1.08998 * 109.47373 * 299.99640 * 11 9 8 36 36 H 1.09001 * 109.47421 * 59.99987 * 11 9 8 37 37 H 1.08998 * 109.46851 * 300.00060 * 12 11 9 38 38 H 1.09005 * 109.47164 * 60.00287 * 12 11 9 39 39 H 0.97000 * 120.00201 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47112 * 174.22633 * 23 22 21 41 41 H 1.08997 * 109.47264 * 294.22625 * 23 22 21 42 42 H 1.08997 * 109.47321 * 54.23039 * 23 22 21 43 43 H 1.09007 * 109.47173 * 55.55622 * 26 25 24 44 44 H 1.09002 * 109.47298 * 175.54981 * 26 25 24 45 45 H 1.08996 * 109.47623 * 295.55299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3755 -0.0005 5 6 1.9185 3.6074 0.0000 6 6 3.2987 3.6852 0.0005 7 6 3.9766 5.0311 0.0005 8 7 4.4105 5.3594 -1.3597 9 6 5.0443 6.5239 -1.6023 10 8 5.2558 7.2998 -0.6944 11 6 5.4911 6.8613 -3.0014 12 6 6.1781 8.2284 -3.0016 13 6 6.6255 8.5655 -4.4006 14 1 6.4390 7.8738 -5.2087 15 6 7.2730 9.7573 -4.6489 16 7 7.5007 10.5995 -3.6648 17 14 7.8283 10.1749 -6.3829 18 1 6.6490 10.2127 -7.2847 19 1 8.4949 11.5018 -6.3831 20 1 8.7828 9.1418 -6.8593 21 6 4.0602 2.5266 0.0000 22 8 5.4180 2.6042 0.0000 23 6 6.0729 2.5148 -1.2669 24 6 3.4340 1.2857 -0.0061 25 8 4.1780 0.1460 -0.0128 26 6 4.5161 -0.4153 1.2571 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2134 2.3189 -0.0014 31 1 1.3281 4.5118 -0.0008 32 1 3.2775 5.7901 0.3520 33 1 4.8431 5.0016 0.6612 34 1 4.2417 4.7387 -2.0857 35 1 6.1907 6.1027 -3.3522 36 1 4.6249 6.8903 -3.6624 37 1 5.4781 8.9868 -2.6509 38 1 7.0443 8.1999 -2.3405 39 1 7.9565 11.4377 -3.8395 40 1 7.1405 2.6928 -1.1374 41 1 5.9186 1.5207 -1.6864 42 1 5.6593 3.2629 -1.9433 43 1 3.6059 -0.5912 1.8306 44 1 5.0404 -1.3594 1.1091 45 1 5.1598 0.2765 1.8004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360006166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:27 Heat of formation + Delta-G solvation = -125.743300 kcal Electronic energy + Delta-G solvation = -27349.864435 eV Core-core repulsion = 23333.891452 eV Total energy + Delta-G solvation = -4015.972983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17062 -39.39291 -38.87152 -37.89975 -36.85659 -34.36076 -33.41903 -31.28860 -30.55861 -30.33886 -28.12397 -27.43067 -26.56197 -26.29796 -24.84620 -22.60505 -21.92359 -21.23471 -19.68079 -18.90769 -17.65194 -17.56766 -16.87218 -16.61369 -16.46716 -15.77166 -15.67953 -15.43973 -15.22912 -15.07973 -14.94348 -14.65964 -14.40161 -14.14474 -13.70806 -13.19773 -13.10950 -12.86217 -12.69193 -12.30416 -12.14878 -12.07235 -11.89198 -11.69893 -11.51059 -11.31681 -11.13774 -10.89541 -10.67036 -10.60481 -9.93291 -9.88082 -9.64519 -9.22206 -9.06942 -8.95046 -8.74283 -8.44533 -8.29843 -5.94093 -3.98528 0.66017 0.82121 2.65584 2.92054 3.29608 3.35612 3.40208 3.41784 3.45791 3.63366 3.88266 4.39710 4.49241 4.56228 4.57123 4.71365 4.76215 4.92686 4.99856 5.05339 5.08881 5.14595 5.21981 5.28417 5.40404 5.40625 5.49639 5.50513 5.62056 5.73718 5.80878 5.89514 6.06832 6.15408 6.25066 6.26480 6.69844 6.72156 6.91413 7.03767 7.40995 7.76144 7.88877 7.90550 8.09538 8.40805 8.81192 9.10031 9.64785 11.16776 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.002388 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.587503 B =11720.098855 C =12019.327475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.126 3.874 4 C -0.206 4.206 5 C -0.051 4.051 6 C -0.145 4.145 7 C 0.169 3.831 8 N -0.740 5.740 9 C 0.510 3.490 10 O -0.533 6.533 11 C -0.130 4.130 12 C 0.038 3.962 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.137 3.863 22 O -0.326 6.326 23 C 0.040 3.960 24 C 0.038 3.962 25 O -0.320 6.320 26 C 0.038 3.962 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.394 0.606 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 -24.934 9.210 30.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.079 3.921 4 C -0.224 4.224 5 C -0.069 4.069 6 C -0.146 4.146 7 C 0.046 3.954 8 N -0.395 5.395 9 C 0.299 3.701 10 O -0.408 6.408 11 C -0.170 4.170 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.092 3.908 22 O -0.243 6.243 23 C -0.053 4.053 24 C -0.008 4.008 25 O -0.236 6.236 26 C -0.056 4.056 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.957 -24.437 9.928 29.842 hybrid contribution -0.240 0.026 -1.210 1.234 sum -14.197 -24.411 8.718 29.554 Atomic orbital electron populations 1.23134 0.78177 1.04203 1.01572 1.86166 1.21415 1.26014 1.88261 1.19297 0.91149 0.85080 0.96560 1.21197 1.00383 0.91552 1.09316 1.20877 0.93109 0.97604 0.95330 1.20117 0.93604 0.94736 1.06143 1.19931 0.98999 0.90781 0.85707 1.46348 1.61928 1.21851 1.09385 1.21559 0.76101 0.79758 0.92727 1.90675 1.54550 1.48619 1.46924 1.21870 1.01388 1.03235 0.90471 1.18890 0.95837 0.88481 0.96779 1.21187 1.37882 1.03485 0.94028 0.92689 1.25025 0.96028 0.96414 0.96907 1.69985 1.41734 1.09865 1.31235 0.86657 0.78857 0.77543 0.84892 1.20271 1.21299 1.20260 1.18605 0.84048 0.90122 0.98008 1.85962 1.14207 1.93299 1.30793 1.23091 0.97748 1.00981 0.83520 1.18297 0.86741 0.86488 1.09226 1.86074 1.70307 1.37735 1.29471 1.22989 0.99625 0.98455 0.84562 0.92476 0.92334 0.88029 0.84482 0.84395 0.90813 0.90273 0.77227 0.90346 0.90301 0.95830 0.95806 0.92899 0.88424 0.92912 0.93118 0.93742 0.88971 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.92 10.28 -34.35 -0.35 -3.27 16 3 C 0.13 1.30 6.70 -39.15 -0.26 1.04 16 4 C -0.21 -1.75 9.04 -39.43 -0.36 -2.10 16 5 C -0.05 -0.46 9.66 -39.59 -0.38 -0.85 16 6 C -0.14 -1.63 5.26 -104.47 -0.55 -2.18 16 7 C 0.17 2.25 5.46 -5.20 -0.03 2.22 16 8 N -0.74 -10.66 4.99 -61.47 -0.31 -10.97 16 9 C 0.51 9.84 7.83 -10.98 -0.09 9.76 16 10 O -0.53 -12.65 15.98 5.56 0.09 -12.56 16 11 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 12 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 13 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 17 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.14 1.67 5.71 -39.15 -0.22 1.44 16 22 O -0.33 -4.20 9.43 -34.31 -0.32 -4.52 16 23 C 0.04 0.44 11.13 101.05 1.12 1.57 16 24 C 0.04 0.45 5.75 -39.03 -0.22 0.22 16 25 O -0.32 -3.86 9.99 -45.31 -0.45 -4.31 16 26 C 0.04 0.34 11.13 101.05 1.13 1.47 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.79 6.29 -52.49 -0.33 0.46 16 31 H 0.14 1.02 8.03 -52.49 -0.42 0.60 16 32 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 33 H 0.08 1.19 7.85 -51.93 -0.41 0.78 16 34 H 0.39 4.74 7.40 -40.82 -0.30 4.44 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 43 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -36.13 383.47 -6.18 -42.32 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.77 Total: -0.46 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.44 Total: -1.92 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.43 Total: -37.78 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.04 Total: -24.66 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.13 -6.18 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360006166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.428 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds