Wall clock time and date at job start Tue Mar 31 2020 14:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36008 * 116.99990 * 2 1 4 4 C 1.38683 * 120.04185 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.08722 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.18096 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.95821 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47288 * 260.02473 * 7 6 5 9 9 C 1.34780 * 119.99960 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99992 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99770 * 179.97438 * 9 8 7 12 12 C 1.53003 * 109.46989 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46989 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00398 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99604 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00353 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99889 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46883 * 60.00151 * 17 15 13 19 19 H 1.48494 * 109.47078 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46973 * 300.00279 * 17 15 13 21 21 C 1.38646 * 120.08758 * 0.02562 * 6 5 4 22 22 O 1.36000 * 120.04537 * 179.97438 * 21 6 5 23 23 C 1.42897 * 116.99998 * 264.27150 * 22 21 6 24 24 C 1.38956 * 120.04556 * 180.29105 * 3 2 1 25 25 O 1.36101 * 120.09093 * 0.03280 * 24 3 2 26 26 C 1.42898 * 116.99385 * 271.19365 * 25 24 3 27 27 H 1.08996 * 109.47025 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.46565 * 59.99890 * 1 2 3 29 29 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.95531 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.91034 * 179.97438 * 5 4 3 32 32 H 1.09006 * 109.46951 * 20.02283 * 7 6 5 33 33 H 1.09001 * 109.47094 * 140.02034 * 7 6 5 34 34 H 0.96997 * 120.00113 * 359.97438 * 8 7 6 35 35 H 1.08998 * 109.47373 * 299.99640 * 11 9 8 36 36 H 1.09001 * 109.47421 * 59.99987 * 11 9 8 37 37 H 1.08998 * 109.46851 * 300.00060 * 12 11 9 38 38 H 1.09005 * 109.47164 * 60.00287 * 12 11 9 39 39 H 0.97000 * 120.00201 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47112 * 174.22633 * 23 22 21 41 41 H 1.08997 * 109.47264 * 294.22625 * 23 22 21 42 42 H 1.08997 * 109.47321 * 54.23039 * 23 22 21 43 43 H 1.09007 * 109.47173 * 55.55622 * 26 25 24 44 44 H 1.09002 * 109.47298 * 175.54981 * 26 25 24 45 45 H 1.08996 * 109.47623 * 295.55299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3755 -0.0005 5 6 1.9185 3.6074 0.0000 6 6 3.2987 3.6852 0.0005 7 6 3.9766 5.0311 0.0005 8 7 4.4105 5.3594 -1.3597 9 6 5.0443 6.5239 -1.6023 10 8 5.2558 7.2998 -0.6944 11 6 5.4911 6.8613 -3.0014 12 6 6.1781 8.2284 -3.0016 13 6 6.6255 8.5655 -4.4006 14 1 6.4390 7.8738 -5.2087 15 6 7.2730 9.7573 -4.6489 16 7 7.5007 10.5995 -3.6648 17 14 7.8283 10.1749 -6.3829 18 1 6.6490 10.2127 -7.2847 19 1 8.4949 11.5018 -6.3831 20 1 8.7828 9.1418 -6.8593 21 6 4.0602 2.5266 0.0000 22 8 5.4180 2.6042 0.0000 23 6 6.0729 2.5148 -1.2669 24 6 3.4340 1.2857 -0.0061 25 8 4.1780 0.1460 -0.0128 26 6 4.5161 -0.4153 1.2571 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2134 2.3189 -0.0014 31 1 1.3281 4.5118 -0.0008 32 1 3.2775 5.7901 0.3520 33 1 4.8431 5.0016 0.6612 34 1 4.2417 4.7387 -2.0857 35 1 6.1907 6.1027 -3.3522 36 1 4.6249 6.8903 -3.6624 37 1 5.4781 8.9868 -2.6509 38 1 7.0443 8.1999 -2.3405 39 1 7.9565 11.4377 -3.8395 40 1 7.1405 2.6928 -1.1374 41 1 5.9186 1.5207 -1.6864 42 1 5.6593 3.2629 -1.9433 43 1 3.6059 -0.5912 1.8306 44 1 5.0404 -1.3594 1.1091 45 1 5.1598 0.2765 1.8004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360006166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:26 Heat of formation + Delta-G solvation = -150.926520 kcal Electronic energy + Delta-G solvation = -27350.956461 eV Core-core repulsion = 23333.891452 eV Total energy + Delta-G solvation = -4017.065010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96871 -40.65155 -39.86122 -38.75800 -37.69565 -35.72302 -35.44782 -33.08136 -31.65244 -31.18297 -28.86617 -28.18821 -27.82495 -27.32795 -26.23291 -23.57610 -23.38056 -22.34352 -21.23390 -19.66382 -18.85568 -18.45009 -18.30949 -17.56059 -17.39231 -17.15858 -16.80805 -16.54122 -16.41802 -16.31840 -15.98794 -15.64860 -15.56212 -15.12441 -14.77841 -14.59291 -14.24181 -14.15897 -13.75075 -13.43895 -13.32547 -13.21740 -13.04181 -12.75990 -12.68348 -12.57183 -12.48401 -12.18357 -11.98255 -11.89247 -11.62345 -11.48777 -11.30426 -10.78584 -10.71547 -10.54552 -10.08614 -9.74782 -9.26032 -8.16137 -6.30144 -0.11049 0.02561 1.43031 1.47495 1.55176 1.73672 1.96095 2.17636 2.39775 2.50397 2.71304 2.97739 3.16638 3.59544 3.81659 3.91694 4.06041 4.11544 4.25904 4.36173 4.37569 4.39543 4.40911 4.42352 4.47880 4.52460 4.53696 4.59245 4.71759 4.74900 4.76704 4.78394 4.95385 5.07466 5.10379 5.28904 5.35005 5.43175 5.52682 5.65705 5.87505 6.02305 6.19543 6.26702 6.57516 6.61410 6.88203 7.34039 7.40030 8.96246 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.002388 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.587503 B =11720.098855 C =12019.327475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.125 3.875 4 C -0.195 4.195 5 C -0.043 4.043 6 C -0.154 4.154 7 C 0.174 3.826 8 N -0.714 5.714 9 C 0.514 3.486 10 O -0.586 6.586 11 C -0.119 4.119 12 C 0.043 3.957 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.288 1.288 20 H -0.263 1.263 21 C 0.124 3.876 22 O -0.345 6.345 23 C 0.038 3.962 24 C 0.018 3.982 25 O -0.337 6.337 26 C 0.036 3.964 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.409 0.591 35 H 0.103 0.897 36 H 0.105 0.895 37 H -0.017 1.017 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.111 0.889 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.511 -26.846 7.535 32.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.078 3.922 4 C -0.213 4.213 5 C -0.061 4.061 6 C -0.155 4.155 7 C 0.051 3.949 8 N -0.368 5.368 9 C 0.303 3.697 10 O -0.466 6.466 11 C -0.159 4.159 12 C 0.005 3.995 13 C -0.581 4.581 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.214 1.214 20 H -0.187 1.187 21 C 0.079 3.921 22 O -0.262 6.262 23 C -0.055 4.055 24 C -0.027 4.027 25 O -0.254 6.254 26 C -0.058 4.058 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.187 0.813 31 H 0.178 0.822 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.129 0.871 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.020 -26.428 8.234 31.982 hybrid contribution 0.298 0.496 -0.610 0.841 sum -15.722 -25.931 7.623 31.269 Atomic orbital electron populations 1.23466 0.75868 1.05891 1.02820 1.86151 1.23818 1.25773 1.87966 1.19418 0.90821 0.86093 0.95846 1.21499 1.01854 0.90380 1.07573 1.21120 0.92178 0.98906 0.93899 1.19919 0.94452 0.93009 1.08159 1.19885 0.98441 0.92354 0.84205 1.46050 1.59800 1.20217 1.10702 1.21310 0.76169 0.80528 0.91711 1.90662 1.57035 1.50717 1.48149 1.21645 1.02382 0.99906 0.91954 1.18677 0.93858 0.91416 0.95515 1.21686 1.37510 1.03994 0.94901 0.90618 1.26136 0.96062 0.96331 1.01931 1.70170 1.42865 1.10499 1.34203 0.85386 0.78877 0.77292 0.78758 1.18656 1.21398 1.18745 1.18742 0.83711 0.90706 0.98900 1.85932 1.15063 1.93458 1.31724 1.23163 0.98008 1.01271 0.83090 1.18464 0.87661 0.86270 1.10318 1.86031 1.70640 1.37927 1.30832 1.23109 0.99890 0.98957 0.83806 0.91014 0.91151 0.86356 0.81253 0.82214 0.90425 0.92364 0.75381 0.87877 0.87704 0.99843 0.99991 0.92879 0.87903 0.92429 0.93070 0.93297 0.87077 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -5.47 10.28 -79.69 -0.82 -6.29 16 3 C 0.13 2.33 6.70 22.55 0.15 2.49 16 4 C -0.19 -2.68 9.04 22.37 0.20 -2.48 16 5 C -0.04 -0.67 9.66 22.26 0.22 -0.45 16 6 C -0.15 -3.30 5.26 -19.77 -0.10 -3.40 16 7 C 0.17 4.59 5.46 85.63 0.47 5.06 16 8 N -0.71 -20.00 4.99 -466.78 -2.33 -22.33 16 9 C 0.51 20.01 7.83 87.66 0.69 20.69 16 10 O -0.59 -29.01 15.98 -3.03 -0.05 -29.06 16 11 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 12 C 0.04 2.41 4.26 29.85 0.13 2.53 16 13 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 14 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 15 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 16 N -0.94 -59.80 13.29 21.45 0.28 -59.52 16 17 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 21 C 0.12 2.96 5.71 22.55 0.13 3.09 16 22 O -0.34 -8.97 9.43 -79.62 -0.75 -9.72 16 23 C 0.04 0.83 11.13 113.37 1.26 2.09 16 24 C 0.02 0.41 5.75 22.62 0.13 0.54 16 25 O -0.34 -8.00 9.99 -70.55 -0.70 -8.70 16 26 C 0.04 0.64 11.13 113.37 1.26 1.90 16 27 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 28 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 29 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.17 1.19 6.29 -2.91 -0.02 1.17 16 31 H 0.16 1.80 8.03 -2.91 -0.02 1.78 16 32 H 0.08 2.01 8.00 -2.38 -0.02 1.99 16 33 H 0.06 1.81 7.85 -2.39 -0.02 1.79 16 34 H 0.41 9.11 7.40 -92.71 -0.69 8.42 16 35 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 38 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16 39 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.06 6.43 -2.39 -0.02 1.04 16 43 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -82.08 383.47 4.48 -77.60 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.32 Total: 13.65 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 6.50 Total: -2.05 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.04 Total: -81.85 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -2.32 Total: -53.78 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -82.08 4.48 -77.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360006166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.326 kcal (2) G-P(sol) polarization free energy of solvation -82.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds