Wall clock time and date at job start Tue Mar 31 2020 14:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99770 * 2 1 4 4 C 1.52998 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47320 * 65.00041 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46927 * 59.99717 * 11 9 7 13 13 H 1.48496 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47040 * 299.99940 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38250 * 119.92447 * 269.71970 * 18 17 15 20 20 C 1.38244 * 120.14516 * 179.72663 * 19 18 17 21 21 C 1.38566 * 119.99897 * 0.55115 * 20 19 18 22 22 O 1.35994 * 120.07374 * 179.70229 * 21 20 19 23 23 C 1.39146 * 119.85199 * 359.72780 * 21 20 19 24 24 O 1.35995 * 120.07166 * 180.02562 * 23 21 20 25 25 C 1.42904 * 117.00124 * 179.97438 * 24 23 21 26 26 C 1.38236 * 119.92780 * 90.00165 * 18 17 15 27 27 H 1.08999 * 109.47112 * 60.00586 * 1 2 3 28 28 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47260 * 300.00210 * 1 2 3 30 30 H 1.08993 * 109.47691 * 59.99666 * 3 2 1 31 31 H 1.08999 * 109.46539 * 299.99231 * 3 2 1 32 32 H 1.08994 * 109.47354 * 304.99932 * 4 3 2 33 33 H 1.09001 * 109.47139 * 184.99506 * 4 3 2 34 34 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 35 35 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 36 36 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 39 39 H 1.08007 * 119.92728 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.99813 * 180.25691 * 20 19 18 41 41 H 0.96695 * 114.00355 * 270.03022 * 22 21 20 42 42 H 1.09003 * 109.47140 * 59.99349 * 25 24 23 43 43 H 1.08997 * 109.47615 * 179.97438 * 25 24 23 44 44 H 1.09006 * 109.46849 * 299.99952 * 25 24 23 45 45 H 1.08000 * 120.00024 * 359.97397 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2981 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8614 -2.6292 -0.9480 10 7 4.9868 -3.5449 -1.3034 11 14 7.5909 -3.1319 -0.4526 12 1 7.8522 -2.6969 0.9429 13 1 7.7224 -4.6083 -0.5432 14 1 8.5729 -2.4903 -1.3632 15 6 4.2633 1.3328 -2.3201 16 8 4.6282 0.8188 -3.3563 17 6 4.1360 2.8315 -2.2263 18 6 4.5183 3.4516 -3.5455 19 6 5.8311 3.8147 -3.7823 20 6 6.1879 4.3787 -4.9929 21 6 5.2267 4.5918 -5.9680 22 8 5.5749 5.1521 -7.1573 23 6 3.9044 4.2317 -5.7275 24 8 2.9575 4.4383 -6.6816 25 6 1.6209 4.0435 -6.3654 26 6 3.5545 3.6615 -4.5140 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8508 0.5686 0.8426 33 1 3.9785 2.1765 0.0901 34 1 3.3858 -1.3632 -0.6712 35 1 3.9139 -1.2124 -2.3644 36 1 5.2397 -4.4812 -1.3079 37 1 3.1057 3.0943 -1.9862 38 1 4.7976 3.2041 -1.4443 39 1 6.5803 3.6537 -3.0212 40 1 7.2149 4.6576 -5.1769 41 1 5.5174 6.1172 -7.1692 42 1 1.2778 4.5924 -5.4884 43 1 0.9677 4.2634 -7.2098 44 1 1.5978 2.9739 -6.1566 45 1 2.5289 3.3808 -4.3249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385575987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:02 Heat of formation + Delta-G solvation = -129.763290 kcal Electronic energy + Delta-G solvation = -27827.134670 eV Core-core repulsion = 23810.987366 eV Total energy + Delta-G solvation = -4016.147303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46730 -39.17575 -37.82364 -37.54144 -36.58244 -34.78133 -32.73508 -31.73532 -30.16305 -29.58920 -28.25194 -27.23587 -26.15769 -25.80606 -22.87595 -22.71996 -22.33093 -21.42359 -18.70955 -18.38985 -17.28624 -16.77799 -16.58737 -16.35295 -16.05433 -15.90117 -15.54848 -15.24206 -15.02545 -14.81132 -14.38875 -14.31219 -14.04099 -13.81234 -13.61468 -13.04728 -12.57868 -12.36903 -12.15488 -12.06521 -11.95033 -11.86600 -11.69362 -11.44390 -11.28736 -11.14695 -11.02526 -10.89364 -10.80319 -10.55876 -10.36989 -10.09097 -9.56788 -9.47263 -8.98284 -8.64274 -8.33459 -8.02130 -7.60622 -5.94975 -3.99181 1.23396 1.44456 3.18672 3.36265 3.39608 3.41087 3.45781 3.59069 3.97557 4.06495 4.20763 4.51824 4.69529 4.86257 4.98065 5.07023 5.08800 5.13542 5.23150 5.33247 5.38095 5.39080 5.41628 5.44756 5.47816 5.54738 5.57810 5.59990 5.63287 5.68515 5.82170 5.92110 6.16794 6.22006 6.32162 6.62573 6.71580 7.18127 7.26050 7.37384 7.58721 7.64646 7.74073 8.02434 8.34380 8.48766 8.97952 9.14338 9.64677 11.13068 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.003865 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.075979 B = 7243.165245 C = 8904.640812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.110 3.890 5 N -0.590 5.590 6 C 0.251 3.749 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.504 3.496 16 O -0.529 6.529 17 C -0.109 4.109 18 C -0.021 4.021 19 C -0.125 4.125 20 C -0.104 4.104 21 C 0.065 3.935 22 O -0.487 6.487 23 C 0.103 3.897 24 O -0.311 6.311 25 C 0.025 3.975 26 C -0.180 4.180 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.380 0.620 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 19.875 -0.803 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.015 4.015 5 N -0.322 5.322 6 C 0.132 3.868 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.290 3.710 16 O -0.406 6.406 17 C -0.149 4.149 18 C -0.021 4.021 19 C -0.143 4.143 20 C -0.122 4.122 21 C 0.020 3.980 22 O -0.295 6.295 23 C 0.057 3.943 24 O -0.224 6.224 25 C -0.070 4.070 26 C -0.199 4.199 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.234 0.766 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.793 18.680 -1.748 20.315 hybrid contribution 0.375 0.182 0.690 0.807 sum -7.417 18.862 -1.058 20.296 Atomic orbital electron populations 1.22702 0.82054 1.02644 0.99059 1.88118 1.18702 1.26886 1.95116 1.23121 0.95435 0.85482 0.99413 1.21529 0.91120 0.99029 0.89772 1.48184 1.64381 1.09885 1.09701 1.19293 0.96683 0.72037 0.98800 1.21426 0.97497 0.92183 1.45392 0.92725 1.24911 0.97294 0.96431 0.95384 1.69933 1.34370 1.00986 1.47984 0.86609 0.84894 0.77312 0.78872 1.20326 1.21246 1.20275 1.20120 0.78868 0.87710 0.84347 1.90715 1.45919 1.74676 1.29276 1.20853 1.03453 0.94724 0.95846 1.19176 0.93179 0.95116 0.94665 1.20819 0.95604 1.00473 0.97439 1.21159 0.99033 0.99913 0.92116 1.17687 0.88828 1.04167 0.87326 1.84920 1.89357 1.24741 1.30492 1.19339 0.88545 0.98075 0.88353 1.86111 1.17323 1.79567 1.39407 1.23074 0.81139 1.00488 1.02308 1.20934 1.00600 1.04949 0.93401 0.94670 0.89743 0.94654 0.93045 0.93877 0.88899 0.90047 0.93677 0.94386 0.92807 0.88898 0.88182 0.85383 0.84783 0.76554 0.92824 0.88335 0.92355 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.18 9.53 -35.23 -0.34 -6.52 16 3 C 0.04 0.58 6.28 37.16 0.23 0.82 16 4 C 0.11 1.70 5.62 -4.04 -0.02 1.68 16 5 N -0.59 -12.31 2.42 -175.06 -0.42 -12.73 16 6 C 0.25 6.69 4.98 -5.20 -0.03 6.67 16 7 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 8 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 11 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.50 10.28 7.67 -10.98 -0.08 10.20 16 16 O -0.53 -13.55 15.61 5.55 0.09 -13.46 16 17 C -0.11 -1.53 4.38 -29.03 -0.13 -1.66 16 18 C -0.02 -0.31 4.37 -104.62 -0.46 -0.77 16 19 C -0.12 -1.78 9.69 -39.57 -0.38 -2.17 16 20 C -0.10 -1.40 9.98 -39.46 -0.39 -1.79 16 21 C 0.07 0.93 6.72 -39.12 -0.26 0.67 16 22 O -0.49 -6.29 13.29 -34.23 -0.45 -6.74 16 23 C 0.10 1.51 6.70 -39.12 -0.26 1.24 16 24 O -0.31 -4.24 10.28 -34.23 -0.35 -4.59 16 25 C 0.03 0.24 9.81 101.05 0.99 1.24 16 26 C -0.18 -2.59 8.69 -39.46 -0.34 -2.93 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.53 7.33 -51.93 -0.38 0.15 16 32 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 33 H 0.08 0.94 6.43 -51.93 -0.33 0.60 16 34 H 0.05 1.25 7.11 -51.93 -0.37 0.88 16 35 H 0.04 1.16 7.42 -51.93 -0.39 0.78 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.09 1.04 7.23 -51.93 -0.38 0.67 16 38 H 0.10 1.16 7.34 -51.93 -0.38 0.77 16 39 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.38 2.89 9.06 45.56 0.41 3.30 16 42 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 45 H 0.13 1.63 6.30 -52.49 -0.33 1.30 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -38.32 380.60 -6.34 -44.66 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.86 Total: 1.96 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.45 Total: 0.94 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.31 Total: -39.21 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.06 Total: -31.31 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.32 -6.34 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385575987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.106 kcal (2) G-P(sol) polarization free energy of solvation -38.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds