Wall clock time and date at job start Tue Mar 31 2020 14:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99770 * 2 1 4 4 C 1.52998 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47320 * 65.00041 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46927 * 59.99717 * 11 9 7 13 13 H 1.48496 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47040 * 299.99940 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38250 * 119.92447 * 269.71970 * 18 17 15 20 20 C 1.38244 * 120.14516 * 179.72663 * 19 18 17 21 21 C 1.38566 * 119.99897 * 0.55115 * 20 19 18 22 22 O 1.35994 * 120.07374 * 179.70229 * 21 20 19 23 23 C 1.39146 * 119.85199 * 359.72780 * 21 20 19 24 24 O 1.35995 * 120.07166 * 180.02562 * 23 21 20 25 25 C 1.42904 * 117.00124 * 179.97438 * 24 23 21 26 26 C 1.38236 * 119.92780 * 90.00165 * 18 17 15 27 27 H 1.08999 * 109.47112 * 60.00586 * 1 2 3 28 28 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47260 * 300.00210 * 1 2 3 30 30 H 1.08993 * 109.47691 * 59.99666 * 3 2 1 31 31 H 1.08999 * 109.46539 * 299.99231 * 3 2 1 32 32 H 1.08994 * 109.47354 * 304.99932 * 4 3 2 33 33 H 1.09001 * 109.47139 * 184.99506 * 4 3 2 34 34 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 35 35 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 36 36 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 39 39 H 1.08007 * 119.92728 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.99813 * 180.25691 * 20 19 18 41 41 H 0.96695 * 114.00355 * 270.03022 * 22 21 20 42 42 H 1.09003 * 109.47140 * 59.99349 * 25 24 23 43 43 H 1.08997 * 109.47615 * 179.97438 * 25 24 23 44 44 H 1.09006 * 109.46849 * 299.99952 * 25 24 23 45 45 H 1.08000 * 120.00024 * 359.97397 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2981 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8614 -2.6292 -0.9480 10 7 4.9868 -3.5449 -1.3034 11 14 7.5909 -3.1319 -0.4526 12 1 7.8522 -2.6969 0.9429 13 1 7.7224 -4.6083 -0.5432 14 1 8.5729 -2.4903 -1.3632 15 6 4.2633 1.3328 -2.3201 16 8 4.6282 0.8188 -3.3563 17 6 4.1360 2.8315 -2.2263 18 6 4.5183 3.4516 -3.5455 19 6 5.8311 3.8147 -3.7823 20 6 6.1879 4.3787 -4.9929 21 6 5.2267 4.5918 -5.9680 22 8 5.5749 5.1521 -7.1573 23 6 3.9044 4.2317 -5.7275 24 8 2.9575 4.4383 -6.6816 25 6 1.6209 4.0435 -6.3654 26 6 3.5545 3.6615 -4.5140 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8508 0.5686 0.8426 33 1 3.9785 2.1765 0.0901 34 1 3.3858 -1.3632 -0.6712 35 1 3.9139 -1.2124 -2.3644 36 1 5.2397 -4.4812 -1.3079 37 1 3.1057 3.0943 -1.9862 38 1 4.7976 3.2041 -1.4443 39 1 6.5803 3.6537 -3.0212 40 1 7.2149 4.6576 -5.1769 41 1 5.5174 6.1172 -7.1692 42 1 1.2778 4.5924 -5.4884 43 1 0.9677 4.2634 -7.2098 44 1 1.5978 2.9739 -6.1566 45 1 2.5289 3.3808 -4.3249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385575987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:01 Heat of formation + Delta-G solvation = -158.558591 kcal Electronic energy + Delta-G solvation = -27828.383328 eV Core-core repulsion = 23810.987366 eV Total energy + Delta-G solvation = -4017.395961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53268 -40.63054 -38.83830 -38.67380 -37.67716 -36.43315 -34.79855 -32.97285 -31.20053 -31.01416 -29.52256 -28.52243 -27.33728 -27.06162 -24.76097 -23.92221 -23.34019 -22.63223 -20.03559 -19.55675 -18.61203 -18.31635 -18.07769 -17.64128 -17.21550 -16.95916 -16.86455 -16.58839 -16.20780 -16.06340 -15.99050 -15.44330 -15.19075 -14.97899 -14.72364 -14.46172 -14.30384 -13.60296 -13.48583 -13.27966 -13.14625 -13.02202 -12.97606 -12.82548 -12.70633 -12.57181 -12.46147 -12.22483 -12.14022 -11.98137 -11.88060 -11.66923 -11.54001 -10.63165 -10.59495 -10.48609 -9.73773 -9.36530 -9.06888 -8.17104 -6.31854 0.17779 0.39494 1.36760 1.41751 1.48592 1.88942 2.24864 2.33634 2.45000 2.74249 3.02006 3.12585 3.23795 3.62342 3.84096 3.88708 4.11254 4.20070 4.27269 4.29994 4.33448 4.38407 4.45252 4.53383 4.54432 4.57137 4.60638 4.64388 4.65964 4.69396 4.87828 4.91258 5.02130 5.13496 5.24933 5.29257 5.32262 5.56634 5.61960 5.72645 5.91779 6.13209 6.26828 6.38664 6.77160 6.88444 6.90194 7.33409 7.55727 8.89784 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.003865 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.075979 B = 7243.165245 C = 8904.640812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.043 3.957 4 C 0.102 3.898 5 N -0.595 5.595 6 C 0.273 3.727 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.258 1.258 13 H -0.281 1.281 14 H -0.278 1.278 15 C 0.496 3.504 16 O -0.594 6.594 17 C -0.091 4.091 18 C -0.040 4.040 19 C -0.136 4.136 20 C -0.109 4.109 21 C 0.056 3.944 22 O -0.499 6.499 23 C 0.086 3.914 24 O -0.326 6.326 25 C 0.018 3.982 26 C -0.187 4.187 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.026 0.974 35 H -0.017 1.017 36 H 0.265 0.735 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.403 0.597 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.046 0.954 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.033 22.409 0.673 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.339 6.339 3 C -0.034 4.034 4 C -0.020 4.020 5 N -0.326 5.326 6 C 0.151 3.849 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.182 1.182 13 H -0.206 1.206 14 H -0.203 1.203 15 C 0.285 3.715 16 O -0.475 6.475 17 C -0.130 4.130 18 C -0.041 4.041 19 C -0.154 4.154 20 C -0.127 4.127 21 C 0.011 3.989 22 O -0.310 6.310 23 C 0.041 3.959 24 O -0.240 6.240 25 C -0.077 4.077 26 C -0.205 4.205 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.044 0.956 35 H 0.001 0.999 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.260 0.740 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.065 0.935 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.680 21.280 -0.226 22.624 hybrid contribution 0.251 -0.569 0.161 0.643 sum -7.429 20.711 -0.065 22.003 Atomic orbital electron populations 1.22838 0.80148 1.02916 1.00844 1.88058 1.21062 1.29264 1.95532 1.23234 0.93504 0.84719 1.01974 1.21945 0.93231 1.00510 0.86358 1.48140 1.64520 1.07698 1.12206 1.18584 0.95389 0.76160 0.94728 1.21760 0.98374 0.92589 1.45263 0.92617 1.25881 1.01785 0.96484 0.95215 1.70078 1.36663 1.01360 1.48966 0.85494 0.79125 0.77065 0.79273 1.18226 1.20596 1.20338 1.21233 0.77011 0.90341 0.82902 1.90681 1.48713 1.76459 1.31663 1.20822 1.06563 0.88925 0.96711 1.19361 0.93627 0.95812 0.95268 1.21082 0.95821 1.00392 0.98092 1.21409 0.99935 0.99563 0.91786 1.17925 0.89078 1.04251 0.87690 1.84847 1.89277 1.26831 1.30092 1.19561 0.89146 0.98475 0.88762 1.86085 1.18596 1.79710 1.39623 1.23334 0.79869 1.00052 1.04404 1.21132 1.01317 1.04747 0.93352 0.93702 0.90451 0.91869 0.88864 0.92570 0.90708 0.85150 0.95588 0.99853 0.92650 0.85281 0.84774 0.84253 0.82803 0.73978 0.90868 0.85899 0.93516 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -13.82 9.53 -148.98 -1.42 -15.24 16 3 C 0.04 1.03 6.28 71.98 0.45 1.48 16 4 C 0.10 2.94 5.62 86.38 0.49 3.42 16 5 N -0.60 -24.92 2.42 -826.15 -2.00 -26.92 16 6 C 0.27 15.28 4.98 85.63 0.43 15.71 16 7 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.00 0.29 5.46 84.66 0.46 0.75 16 10 N -0.93 -58.61 13.29 21.45 0.28 -58.32 16 11 Si 0.97 46.09 29.54 68.60 2.03 48.11 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 C 0.50 20.13 7.67 87.66 0.67 20.81 16 16 O -0.59 -31.51 15.61 -3.04 -0.05 -31.56 16 17 C -0.09 -2.30 4.38 29.10 0.13 -2.18 16 18 C -0.04 -1.13 4.37 -19.86 -0.09 -1.21 16 19 C -0.14 -3.68 9.69 22.27 0.22 -3.46 16 20 C -0.11 -2.81 9.98 22.35 0.22 -2.59 16 21 C 0.06 1.56 6.72 22.57 0.15 1.71 16 22 O -0.50 -12.41 13.29 -79.61 -1.06 -13.47 16 23 C 0.09 2.48 6.70 22.57 0.15 2.63 16 24 O -0.33 -8.68 10.28 -79.63 -0.82 -9.49 16 25 C 0.02 0.32 9.81 113.37 1.11 1.44 16 26 C -0.19 -5.18 8.69 22.35 0.19 -4.99 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.20 7.33 -2.39 -0.02 1.18 16 32 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.13 2.42 6.43 -2.39 -0.02 2.40 16 34 H 0.03 1.53 7.11 -2.39 -0.02 1.52 16 35 H -0.02 -1.10 7.42 -2.38 -0.02 -1.12 16 36 H 0.26 15.67 8.31 -92.72 -0.77 14.90 16 37 H 0.13 2.33 7.23 -2.38 -0.02 2.31 16 38 H 0.13 2.49 7.34 -2.39 -0.02 2.47 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.40 5.59 9.06 -74.06 -0.67 4.92 16 42 H 0.07 1.03 7.66 -2.39 -0.02 1.02 16 43 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 0.95 7.66 -2.38 -0.02 0.94 16 45 H 0.14 3.37 6.30 -2.91 -0.02 3.35 16 Total: -1.00 -89.33 380.60 3.38 -85.95 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.34 Total: 17.28 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.08 Total: 3.67 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.71 Total: -85.24 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -3.34 Total: -69.76 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -89.33 3.38 -85.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385575987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.613 kcal (2) G-P(sol) polarization free energy of solvation -89.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds