Wall clock time and date at job start Tue Mar 31 2020 13:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00104 * 2 1 4 4 C 1.50699 * 109.47020 * 293.95426 * 3 2 1 5 5 H 1.08003 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00220 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99842 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00399 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.46828 * 90.00272 * 8 6 4 10 10 H 1.48493 * 109.47609 * 210.00085 * 8 6 4 11 11 H 1.48497 * 109.47186 * 330.00543 * 8 6 4 12 12 C 1.46901 * 111.00165 * 123.95325 * 2 1 3 13 13 C 1.53001 * 109.47343 * 164.01175 * 12 2 1 14 14 H 1.08999 * 109.47025 * 58.50845 * 13 12 2 15 15 O 1.42900 * 109.46820 * 298.51163 * 13 12 2 16 16 C 1.52996 * 109.47246 * 178.50919 * 13 12 2 17 17 O 1.42900 * 109.47048 * 184.99573 * 16 13 12 18 18 C 1.35996 * 116.99979 * 179.97438 * 17 16 13 19 19 C 1.38644 * 120.01126 * 0.02562 * 18 17 16 20 20 C 1.38206 * 120.04827 * 180.02562 * 19 18 17 21 21 C 1.38204 * 120.15316 * 0.30493 * 20 19 18 22 22 C 1.38795 * 120.15910 * 359.47385 * 21 20 19 23 23 C 1.38814 * 119.86148 * 0.41024 * 22 21 20 24 24 O 1.36198 * 120.80386 * 180.15582 * 23 22 21 25 25 C 1.43176 * 116.71672 * 342.69619 * 24 23 22 26 26 C 1.53473 * 108.24277 * 46.13087 * 25 24 23 27 27 O 1.36118 * 119.36001 * 179.97438 * 22 21 20 28 28 H 1.09003 * 109.46936 * 301.52959 * 1 2 3 29 29 H 1.08999 * 109.47253 * 61.53183 * 1 2 3 30 30 H 1.09000 * 109.46647 * 181.53496 * 1 2 3 31 31 H 1.09001 * 109.46520 * 53.95628 * 3 2 1 32 32 H 1.08997 * 109.46909 * 173.95315 * 3 2 1 33 33 H 0.97001 * 120.00076 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47260 * 44.01342 * 12 2 1 35 35 H 1.08998 * 109.47074 * 284.01083 * 12 2 1 36 36 H 0.96704 * 114.00257 * 299.99567 * 15 13 12 37 37 H 1.08998 * 109.47302 * 65.00183 * 16 13 12 38 38 H 1.08994 * 109.47226 * 304.99977 * 16 13 12 39 39 H 1.07996 * 119.97567 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.92316 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.92288 * 179.70370 * 21 20 19 42 42 H 1.09002 * 109.70364 * 286.44365 * 25 24 23 43 43 H 1.08998 * 109.74335 * 165.83950 * 25 24 23 44 44 H 1.09001 * 109.70922 * 180.64848 * 26 25 24 45 45 H 1.09002 * 109.74569 * 60.03220 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5830 4.1868 -3.1383 9 1 0.2703 4.8667 -2.9970 10 1 2.6250 5.1883 -3.4791 11 1 1.5006 3.1710 -4.2183 12 6 1.9955 -0.7660 1.1376 13 6 3.4729 -1.0839 0.8984 14 1 4.0282 -0.1549 0.7698 15 8 3.6034 -1.8838 -0.2785 16 6 4.0308 -1.8494 2.0999 17 8 5.4361 -2.0447 1.9294 18 6 6.0908 -2.7131 2.9164 19 6 5.3939 -3.1710 4.0241 20 6 6.0585 -3.8499 5.0278 21 6 7.4198 -4.0691 4.9340 22 6 8.1241 -3.6180 3.8263 23 6 7.4597 -2.9378 2.8149 24 8 8.1312 -2.4895 1.7180 25 6 9.5564 -2.4049 1.8258 26 6 10.0683 -3.7054 2.4599 27 8 9.4645 -3.8423 3.7509 28 1 -0.3633 0.5374 0.8760 29 1 -0.3634 0.4898 -0.9034 30 1 -0.3632 -1.0273 0.0275 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3444 0.1083 33 1 2.9865 4.9180 -0.7770 34 1 1.4357 -1.6957 1.2399 35 1 1.8934 -0.1781 2.0498 36 1 3.1334 -2.7278 -0.2347 37 1 3.5361 -2.8177 2.1754 38 1 3.8512 -1.2777 3.0103 39 1 4.3311 -2.9962 4.1030 40 1 5.5136 -4.2060 5.8895 41 1 7.9363 -4.5958 5.7228 42 1 9.8277 -1.5574 2.4553 43 1 9.9940 -2.2819 0.8351 44 1 11.1525 -3.6617 2.5640 45 1 9.7930 -4.5538 1.8334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414144549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:31 Heat of formation + Delta-G solvation = -120.301305 kcal Electronic energy + Delta-G solvation = -27345.498862 eV Core-core repulsion = 23329.761861 eV Total energy + Delta-G solvation = -4015.737001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46761 -39.57637 -37.81895 -37.40372 -36.56530 -35.30792 -32.47800 -31.50436 -30.72757 -29.54453 -28.64702 -27.35209 -26.39865 -25.00049 -23.76284 -22.54463 -22.03747 -20.86530 -20.12903 -19.08494 -17.88058 -17.66717 -16.72001 -16.56754 -16.20076 -15.92514 -15.59735 -15.21182 -14.87230 -14.82893 -14.75043 -14.46373 -14.25841 -14.21409 -13.63516 -13.40950 -13.26870 -12.91508 -12.53385 -12.26977 -11.95113 -11.79233 -11.58686 -11.41354 -11.29025 -11.19014 -10.93484 -10.91264 -10.66480 -10.65616 -10.62838 -10.33803 -9.75676 -9.66561 -9.14570 -8.40934 -8.39999 -8.05470 -7.24280 -5.99474 -3.99985 1.06465 1.19538 2.75760 2.99945 3.10085 3.34612 3.40883 3.46201 3.51591 4.03285 4.43682 4.52962 4.56245 4.60445 4.70131 4.75230 4.83323 4.87758 5.00389 5.10384 5.15677 5.22973 5.25646 5.32264 5.36725 5.45671 5.50349 5.60907 5.81623 5.92962 5.95020 6.05981 6.18956 6.30662 6.31544 6.40977 6.67937 6.70171 7.03114 7.26664 7.30224 7.46374 7.81053 8.07146 8.11278 8.20290 8.55367 9.06774 9.63767 11.11734 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.002628 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.811937 B =10650.835735 C =11685.241480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.530 5.530 3 C 0.190 3.810 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.030 3.970 13 C 0.117 3.883 14 H 0.114 0.886 15 O -0.531 6.531 16 C 0.027 3.973 17 O -0.285 6.285 18 C 0.146 3.854 19 C -0.212 4.212 20 C -0.074 4.074 21 C -0.157 4.157 22 C 0.084 3.916 23 C 0.015 3.985 24 O -0.290 6.290 25 C 0.019 3.981 26 C 0.019 3.981 27 O -0.305 6.305 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.043 0.957 31 H -0.010 1.010 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.362 0.638 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -18.219 11.978 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.065 3.935 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.100 4.100 13 C 0.057 3.943 14 H 0.132 0.868 15 O -0.333 6.333 16 C -0.049 4.049 17 O -0.198 6.198 18 C 0.099 3.901 19 C -0.231 4.231 20 C -0.093 4.093 21 C -0.176 4.176 22 C 0.039 3.961 23 C -0.030 4.030 24 O -0.205 6.205 25 C -0.057 4.057 26 C -0.056 4.056 27 O -0.220 6.220 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.008 0.992 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.207 0.793 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.995 -17.652 11.145 23.594 hybrid contribution -0.737 0.554 0.317 0.975 sum 10.257 -17.098 11.462 22.998 Atomic orbital electron populations 1.22200 0.88538 0.98970 1.01091 1.62007 1.06684 1.17998 1.38792 1.19818 0.95621 0.81302 0.96712 1.21131 1.34699 0.96774 1.01654 0.91851 1.24987 0.95308 0.97393 0.97001 1.69956 1.38429 1.11422 1.34150 0.86492 0.77882 0.79205 0.83821 1.20822 1.21262 1.19718 1.22562 0.94644 0.98637 0.94126 1.21951 0.95061 0.94627 0.82654 0.86790 1.86752 1.75339 1.33200 1.38057 1.23764 0.79269 1.00659 1.01188 1.86302 1.22119 1.70293 1.41070 1.18259 0.89096 0.93862 0.88917 1.21080 1.00837 1.06012 0.95144 1.20670 0.93099 0.97280 0.98225 1.20296 0.93733 1.05330 0.98213 1.18576 0.83527 0.98159 0.95831 1.18036 0.90249 1.03597 0.91161 1.86501 1.18991 1.82073 1.32889 1.23636 0.80273 0.97536 1.04275 1.23677 0.99526 0.98500 0.83900 1.86313 1.18200 1.86180 1.31280 0.97039 0.90635 0.93791 0.99247 0.94932 0.92961 0.91749 0.94736 0.79296 0.91805 0.91144 0.84491 0.84795 0.84825 0.90548 0.85927 0.86051 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.32 60.06 0.56 1.33 16 2 N -0.53 -11.42 4.60 -244.37 -1.12 -12.54 16 3 C 0.19 5.01 4.57 -4.97 -0.02 4.99 16 4 C -0.50 -14.44 8.53 -34.44 -0.29 -14.73 16 5 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.03 0.50 4.63 -3.82 -0.02 0.48 16 13 C 0.12 1.99 3.27 -26.73 -0.09 1.90 16 14 H 0.11 2.35 6.55 -51.93 -0.34 2.01 16 15 O -0.53 -9.54 13.20 -40.09 -0.53 -10.07 16 16 C 0.03 0.37 4.37 37.16 0.16 0.53 16 17 O -0.29 -4.64 9.85 -41.20 -0.41 -5.05 16 18 C 0.15 2.10 6.70 -39.11 -0.26 1.84 16 19 C -0.21 -2.40 9.03 -39.44 -0.36 -2.75 16 20 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 21 C -0.16 -1.65 9.96 -39.39 -0.39 -2.04 16 22 C 0.08 1.05 6.49 -39.16 -0.25 0.80 16 23 C 0.02 0.22 6.50 -39.05 -0.25 -0.04 16 24 O -0.29 -4.25 10.18 -45.20 -0.46 -4.71 16 25 C 0.02 0.18 7.26 37.40 0.27 0.45 16 26 C 0.02 0.16 7.26 37.40 0.27 0.43 16 27 O -0.31 -3.40 10.42 -32.95 -0.34 -3.75 16 28 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 30 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 31 H -0.01 -0.28 8.11 -51.93 -0.42 -0.71 16 32 H 0.03 0.92 6.38 -51.93 -0.33 0.59 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 35 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.36 4.81 9.05 45.56 0.41 5.22 16 37 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 38 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 39 H 0.14 1.28 6.29 -52.49 -0.33 0.95 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -35.53 370.52 -8.61 -44.13 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.87 Total: 2.22 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.17 Total: -6.46 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -0.39 Total: -38.96 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.74 Total: -23.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.53 -8.61 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414144549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.168 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds