Wall clock time and date at job start Tue Mar 31 2020 13:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00104 * 2 1 4 4 C 1.50699 * 109.47020 * 293.95426 * 3 2 1 5 5 H 1.08003 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00220 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99842 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00399 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.46828 * 90.00272 * 8 6 4 10 10 H 1.48493 * 109.47609 * 210.00085 * 8 6 4 11 11 H 1.48497 * 109.47186 * 330.00543 * 8 6 4 12 12 C 1.46901 * 111.00165 * 123.95325 * 2 1 3 13 13 C 1.53001 * 109.47343 * 164.01175 * 12 2 1 14 14 H 1.08999 * 109.47025 * 58.50845 * 13 12 2 15 15 O 1.42900 * 109.46820 * 298.51163 * 13 12 2 16 16 C 1.52996 * 109.47246 * 178.50919 * 13 12 2 17 17 O 1.42900 * 109.47048 * 184.99573 * 16 13 12 18 18 C 1.35996 * 116.99979 * 179.97438 * 17 16 13 19 19 C 1.38644 * 120.01126 * 0.02562 * 18 17 16 20 20 C 1.38206 * 120.04827 * 180.02562 * 19 18 17 21 21 C 1.38204 * 120.15316 * 0.30493 * 20 19 18 22 22 C 1.38795 * 120.15910 * 359.47385 * 21 20 19 23 23 C 1.38814 * 119.86148 * 0.41024 * 22 21 20 24 24 O 1.36198 * 120.80386 * 180.15582 * 23 22 21 25 25 C 1.43176 * 116.71672 * 342.69619 * 24 23 22 26 26 C 1.53473 * 108.24277 * 46.13087 * 25 24 23 27 27 O 1.36118 * 119.36001 * 179.97438 * 22 21 20 28 28 H 1.09003 * 109.46936 * 301.52959 * 1 2 3 29 29 H 1.08999 * 109.47253 * 61.53183 * 1 2 3 30 30 H 1.09000 * 109.46647 * 181.53496 * 1 2 3 31 31 H 1.09001 * 109.46520 * 53.95628 * 3 2 1 32 32 H 1.08997 * 109.46909 * 173.95315 * 3 2 1 33 33 H 0.97001 * 120.00076 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47260 * 44.01342 * 12 2 1 35 35 H 1.08998 * 109.47074 * 284.01083 * 12 2 1 36 36 H 0.96704 * 114.00257 * 299.99567 * 15 13 12 37 37 H 1.08998 * 109.47302 * 65.00183 * 16 13 12 38 38 H 1.08994 * 109.47226 * 304.99977 * 16 13 12 39 39 H 1.07996 * 119.97567 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.92316 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.92288 * 179.70370 * 21 20 19 42 42 H 1.09002 * 109.70364 * 286.44365 * 25 24 23 43 43 H 1.08998 * 109.74335 * 165.83950 * 25 24 23 44 44 H 1.09001 * 109.70922 * 180.64848 * 26 25 24 45 45 H 1.09002 * 109.74569 * 60.03220 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5830 4.1868 -3.1383 9 1 0.2703 4.8667 -2.9970 10 1 2.6250 5.1883 -3.4791 11 1 1.5006 3.1710 -4.2183 12 6 1.9955 -0.7660 1.1376 13 6 3.4729 -1.0839 0.8984 14 1 4.0282 -0.1549 0.7698 15 8 3.6034 -1.8838 -0.2785 16 6 4.0308 -1.8494 2.0999 17 8 5.4361 -2.0447 1.9294 18 6 6.0908 -2.7131 2.9164 19 6 5.3939 -3.1710 4.0241 20 6 6.0585 -3.8499 5.0278 21 6 7.4198 -4.0691 4.9340 22 6 8.1241 -3.6180 3.8263 23 6 7.4597 -2.9378 2.8149 24 8 8.1312 -2.4895 1.7180 25 6 9.5564 -2.4049 1.8258 26 6 10.0683 -3.7054 2.4599 27 8 9.4645 -3.8423 3.7509 28 1 -0.3633 0.5374 0.8760 29 1 -0.3634 0.4898 -0.9034 30 1 -0.3632 -1.0273 0.0275 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3444 0.1083 33 1 2.9865 4.9180 -0.7770 34 1 1.4357 -1.6957 1.2399 35 1 1.8934 -0.1781 2.0498 36 1 3.1334 -2.7278 -0.2347 37 1 3.5361 -2.8177 2.1754 38 1 3.8512 -1.2777 3.0103 39 1 4.3311 -2.9962 4.1030 40 1 5.5136 -4.2060 5.8895 41 1 7.9363 -4.5958 5.7228 42 1 9.8277 -1.5574 2.4553 43 1 9.9940 -2.2819 0.8351 44 1 11.1525 -3.6617 2.5640 45 1 9.7930 -4.5538 1.8334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414144549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:30 Heat of formation + Delta-G solvation = -147.850223 kcal Electronic energy + Delta-G solvation = -27346.693472 eV Core-core repulsion = 23329.761861 eV Total energy + Delta-G solvation = -4016.931611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31867 -40.60744 -39.15986 -38.29119 -37.63571 -36.80936 -34.62265 -32.32647 -31.89176 -30.57687 -29.51129 -29.34546 -27.69757 -25.87568 -25.51096 -23.71639 -23.18674 -21.84179 -21.69663 -20.00107 -18.81003 -18.65474 -18.49331 -17.75646 -17.44691 -17.07843 -16.71485 -16.42973 -16.27349 -16.02763 -15.66287 -15.62344 -15.50398 -15.25560 -15.13119 -14.89210 -14.24611 -14.08237 -13.94661 -13.78472 -13.13142 -13.01856 -12.93373 -12.75767 -12.61238 -12.57930 -12.44236 -12.28314 -12.12238 -12.05101 -11.74863 -11.52113 -11.48370 -11.32633 -10.91405 -10.61302 -9.25744 -9.00124 -8.97215 -8.21268 -6.30670 0.21272 0.31212 1.38766 1.41394 1.52938 1.89701 2.11225 2.29753 2.39973 2.65866 3.11147 3.22239 3.35770 3.55157 3.74646 3.81019 3.89456 3.91197 4.00221 4.06560 4.15997 4.20699 4.28437 4.33228 4.38972 4.42211 4.55731 4.56323 4.63142 4.64044 4.77314 4.99797 5.04100 5.09487 5.10586 5.18294 5.30542 5.38448 5.54815 5.63996 5.85892 6.05171 6.14759 6.32800 6.53387 6.63047 6.85098 7.00246 7.38646 8.90071 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.002628 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.811937 B =10650.835735 C =11685.241480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.545 5.545 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.033 3.967 13 C 0.122 3.878 14 H 0.062 0.938 15 O -0.557 6.557 16 C 0.037 3.963 17 O -0.321 6.321 18 C 0.113 3.887 19 C -0.210 4.210 20 C -0.065 4.065 21 C -0.157 4.157 22 C 0.074 3.926 23 C -0.015 4.015 24 O -0.327 6.327 25 C 0.009 3.991 26 C 0.020 3.980 27 O -0.314 6.314 28 H 0.011 0.989 29 H 0.054 0.946 30 H 0.087 0.913 31 H -0.037 1.037 32 H 0.001 0.999 33 H 0.264 0.736 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.383 0.617 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.159 0.841 40 H 0.173 0.827 41 H 0.157 0.843 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.159 0.841 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -20.307 12.994 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.269 5.269 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.794 3.206 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.096 4.096 13 C 0.062 3.938 14 H 0.080 0.920 15 O -0.364 6.364 16 C -0.039 4.039 17 O -0.235 6.235 18 C 0.067 3.933 19 C -0.229 4.229 20 C -0.083 4.083 21 C -0.176 4.176 22 C 0.028 3.972 23 C -0.060 4.060 24 O -0.243 6.243 25 C -0.066 4.066 26 C -0.054 4.054 27 O -0.229 6.229 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.105 0.895 31 H -0.019 1.019 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.056 0.944 36 H 0.231 0.769 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.176 0.824 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.092 0.908 43 H 0.162 0.838 44 H 0.176 0.824 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.240 -19.776 12.175 25.381 hybrid contribution -0.434 1.122 0.045 1.204 sum 9.806 -18.655 12.221 24.362 Atomic orbital electron populations 1.22225 0.86859 1.01434 1.00073 1.61870 1.08293 1.15146 1.41595 1.19415 0.93667 0.83952 0.94920 1.21480 1.34699 0.97390 1.02492 0.92016 1.25940 0.95049 0.98169 1.00770 1.70089 1.39436 1.11848 1.36293 0.85380 0.78049 0.78044 0.79146 1.19412 1.20824 1.19077 1.22654 0.94790 0.99738 0.92417 1.21709 0.94827 0.93301 0.83995 0.92035 1.86691 1.76146 1.34580 1.38933 1.23647 0.78714 1.02032 0.99479 1.86225 1.23256 1.71393 1.42662 1.18654 0.89493 0.95302 0.89825 1.21400 1.01853 1.05324 0.94278 1.21135 0.92889 0.95671 0.98596 1.20732 0.94348 1.04592 0.97908 1.18859 0.84144 0.98206 0.95979 1.18427 0.90787 1.04920 0.91859 1.86422 1.21407 1.82575 1.33904 1.23941 0.78378 0.98488 1.05795 1.23925 1.01227 0.97519 0.82776 1.86286 1.17686 1.86087 1.32826 0.96996 0.92714 0.89489 1.01929 0.98092 0.92746 0.87160 0.94396 0.76911 0.88199 0.89823 0.82362 0.80937 0.82493 0.90771 0.83824 0.82382 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.32 127.69 1.19 2.74 16 2 N -0.54 -23.53 4.60 -927.04 -4.27 -27.80 16 3 C 0.21 11.37 4.57 85.56 0.39 11.76 16 4 C -0.52 -30.78 8.53 25.60 0.22 -30.56 16 5 H 0.06 3.57 7.10 -2.91 -0.02 3.55 16 6 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 7 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 8 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 C 0.03 1.07 4.63 86.30 0.40 1.47 16 13 C 0.12 4.23 3.27 30.59 0.10 4.33 16 14 H 0.06 2.77 6.55 -2.39 -0.02 2.76 16 15 O -0.56 -20.25 13.20 -144.34 -1.90 -22.16 16 16 C 0.04 0.97 4.37 71.98 0.31 1.28 16 17 O -0.32 -10.82 9.85 -72.98 -0.72 -11.54 16 18 C 0.11 3.29 6.70 22.57 0.15 3.45 16 19 C -0.21 -4.34 9.03 22.36 0.20 -4.14 16 20 C -0.07 -1.06 10.04 22.25 0.22 -0.84 16 21 C -0.16 -2.97 9.96 22.39 0.22 -2.75 16 22 C 0.07 1.80 6.49 22.54 0.15 1.95 16 23 C -0.01 -0.44 6.50 22.61 0.15 -0.29 16 24 O -0.33 -10.18 10.18 -72.06 -0.73 -10.91 16 25 C 0.01 0.17 7.26 72.14 0.52 0.70 16 26 C 0.02 0.31 7.26 72.14 0.52 0.83 16 27 O -0.31 -6.76 10.42 -82.62 -0.86 -7.62 16 28 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 29 H 0.05 2.23 6.90 -2.39 -0.02 2.21 16 30 H 0.09 2.46 7.97 -2.39 -0.02 2.44 16 31 H -0.04 -2.17 8.11 -2.39 -0.02 -2.19 16 32 H 0.00 0.06 6.38 -2.39 -0.02 0.05 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.11 2.62 7.88 -2.39 -0.02 2.60 16 35 H 0.04 1.23 8.05 -2.39 -0.02 1.21 16 36 H 0.38 9.70 9.05 -74.05 -0.67 9.03 16 37 H 0.10 1.87 7.66 -2.39 -0.02 1.86 16 38 H 0.08 1.93 7.66 -2.39 -0.02 1.92 16 39 H 0.16 2.45 6.29 -2.91 -0.02 2.43 16 40 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -82.34 370.52 -0.62 -82.96 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.34 Total: 16.85 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.22 Total: -9.70 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -3.98 Total: -85.78 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -4.22 Total: -52.22 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -82.34 -0.62 -82.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414144549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.894 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds