Wall clock time and date at job start Tue Mar 31 2020 13:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99663 * 2 1 4 4 C 1.50708 * 109.47167 * 293.95468 * 3 2 1 5 5 H 1.07999 * 119.99651 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99944 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00008 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00032 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47311 * 89.99594 * 8 6 4 10 10 H 1.48502 * 109.46986 * 209.99814 * 8 6 4 11 11 H 1.48503 * 109.47027 * 329.99757 * 8 6 4 12 12 C 1.46890 * 111.00223 * 123.95159 * 2 1 3 13 13 C 1.53009 * 109.47140 * 66.04780 * 12 2 1 14 14 H 1.09001 * 109.46642 * 304.99907 * 13 12 2 15 15 O 1.42900 * 109.46870 * 64.99718 * 13 12 2 16 16 C 1.52999 * 109.46984 * 185.00047 * 13 12 2 17 17 O 1.42905 * 109.46728 * 175.00138 * 16 13 12 18 18 C 1.35972 * 116.99782 * 179.97438 * 17 16 13 19 19 C 1.38696 * 120.00613 * 359.72670 * 18 17 16 20 20 C 1.38175 * 120.05583 * 179.76220 * 19 18 17 21 21 C 1.38685 * 120.13750 * 0.56329 * 20 19 18 22 22 C 1.38968 * 119.91038 * 359.62718 * 21 20 19 23 23 C 1.38617 * 120.00429 * 179.97438 * 18 17 16 24 24 O 1.36109 * 120.78505 * 180.27512 * 22 21 20 25 25 C 1.43172 * 116.73300 * 342.79550 * 24 22 21 26 26 C 1.53472 * 108.24532 * 46.19034 * 25 24 22 27 27 O 1.36211 * 119.33237 * 179.53942 * 21 20 19 28 28 H 1.09003 * 109.47019 * 296.04497 * 1 2 3 29 29 H 1.09002 * 109.47421 * 56.04591 * 1 2 3 30 30 H 1.08999 * 109.46939 * 176.04991 * 1 2 3 31 31 H 1.08999 * 109.47190 * 53.95186 * 3 2 1 32 32 H 1.09003 * 109.47229 * 173.95732 * 3 2 1 33 33 H 0.96993 * 120.00217 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47675 * 306.04966 * 12 2 1 35 35 H 1.08996 * 109.47404 * 186.04571 * 12 2 1 36 36 H 0.96702 * 113.99716 * 60.00481 * 15 13 12 37 37 H 1.09000 * 109.47486 * 55.00077 * 16 13 12 38 38 H 1.09001 * 109.47362 * 294.99354 * 16 13 12 39 39 H 1.08003 * 119.97160 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.93309 * 180.27055 * 20 19 18 41 41 H 1.08004 * 119.97944 * 359.97438 * 23 18 17 42 42 H 1.08994 * 109.71129 * 165.87473 * 25 24 22 43 43 H 1.09001 * 109.70511 * 286.50715 * 25 24 22 44 44 H 1.08999 * 109.71487 * 59.92701 * 26 25 24 45 45 H 1.09005 * 109.71042 * 180.55964 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 1.7150 3.9387 -2.6622 8 14 3.0019 4.2755 -0.2320 9 1 4.4540 4.0619 -0.4574 10 1 2.6946 5.7255 -0.3238 11 1 2.6314 3.7754 1.1163 12 6 1.9955 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7695 -0.1801 16 6 2.0701 -3.0198 2.2131 17 8 1.6274 -4.3745 2.1084 18 6 1.9377 -5.2066 3.1382 19 6 2.6580 -4.7290 4.2229 20 6 2.9696 -5.5724 5.2721 21 6 2.5736 -6.9011 5.2387 22 6 1.8551 -7.3829 4.1511 23 6 1.5385 -6.5335 3.1015 24 8 1.4527 -8.6822 4.1024 25 6 2.1056 -9.5925 4.9940 26 6 2.1636 -8.9450 6.3842 27 8 2.8977 -7.7203 6.2775 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3445 0.1082 33 1 1.9895 4.8548 -2.8242 34 1 1.5612 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1756 36 1 3.2602 -2.7166 -0.1360 37 1 1.6331 -2.5623 3.1007 38 1 3.1571 -2.9978 2.2906 39 1 2.9719 -3.6959 4.2495 40 1 3.5268 -5.1973 6.1178 41 1 0.9807 -6.9061 2.2551 42 1 1.5423 -10.5241 5.0457 43 1 3.1167 -9.7927 4.6393 44 1 1.1529 -8.7383 6.7360 45 1 2.6663 -9.6154 7.0813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414145193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:22 Heat of formation + Delta-G solvation = -117.946569 kcal Electronic energy + Delta-G solvation = -26647.593463 eV Core-core repulsion = 22631.958571 eV Total energy + Delta-G solvation = -4015.634892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60569 -39.93388 -38.04502 -37.58851 -36.60870 -35.49835 -32.50831 -31.39010 -31.25520 -30.18099 -28.39415 -27.87482 -26.60549 -25.05755 -23.94088 -23.21643 -21.47362 -21.00841 -20.22361 -19.23967 -18.22274 -17.71472 -16.94550 -16.77130 -16.61372 -16.22106 -15.77364 -15.38070 -15.14769 -14.91675 -14.72827 -14.54232 -14.32183 -14.16046 -13.80744 -13.72530 -13.43442 -13.31421 -12.80583 -12.72832 -12.28787 -11.96652 -11.87741 -11.69902 -11.49684 -11.26204 -11.03618 -10.90893 -10.80890 -10.60743 -10.55856 -10.32387 -10.08047 -9.70216 -9.28443 -8.90052 -8.58774 -8.04571 -7.40476 -6.06223 -4.03810 0.91593 1.05927 2.44748 2.75245 3.18821 3.25914 3.33621 3.34022 3.37723 3.79450 4.26746 4.35205 4.39550 4.44047 4.44944 4.53622 4.63772 4.72050 4.85983 4.89626 4.98790 5.03271 5.09213 5.17474 5.24366 5.28385 5.42540 5.48004 5.60256 5.77712 5.80943 5.95783 6.03111 6.08662 6.15110 6.21242 6.50789 6.64594 6.81973 6.94492 6.98732 7.20097 7.54239 7.83832 7.86165 8.01685 8.63536 9.03433 9.54760 11.06888 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.035376 B = 0.001959 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.312367 B =14287.630080 C =14799.798078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.116 3.884 14 H 0.109 0.891 15 O -0.536 6.536 16 C 0.027 3.973 17 O -0.297 6.297 18 C 0.143 3.857 19 C -0.206 4.206 20 C -0.071 4.071 21 C 0.007 3.993 22 C 0.091 3.909 23 C -0.151 4.151 24 O -0.305 6.305 25 C 0.021 3.979 26 C 0.021 3.979 27 O -0.309 6.309 28 H 0.011 0.989 29 H 0.083 0.917 30 H 0.051 0.949 31 H -0.012 1.012 32 H 0.023 0.977 33 H 0.264 0.736 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.370 0.630 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -25.833 20.392 32.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.055 3.945 14 H 0.126 0.874 15 O -0.340 6.340 16 C -0.049 4.049 17 O -0.210 6.210 18 C 0.097 3.903 19 C -0.224 4.224 20 C -0.089 4.089 21 C -0.038 4.038 22 C 0.046 3.954 23 C -0.170 4.170 24 O -0.219 6.219 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.224 6.224 28 H 0.029 0.971 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.622 -26.074 19.498 32.598 hybrid contribution 0.972 1.095 1.949 2.438 sum 2.594 -24.979 21.447 33.025 Atomic orbital electron populations 1.22332 0.88070 1.00222 1.00947 1.61826 1.07534 1.16172 1.38801 1.20210 0.94825 0.83919 0.97431 1.21029 1.35680 0.97191 1.00843 0.89984 1.24906 0.95838 0.97357 0.95289 1.69888 1.46831 1.13280 1.23792 0.86867 0.80900 0.79354 0.82623 1.20143 1.21176 1.19405 1.22682 1.00818 0.93146 0.93827 1.21954 0.99053 0.90366 0.83092 0.87375 1.86671 1.23072 1.83708 1.40503 1.23755 0.99913 0.80263 1.01010 1.86179 1.73932 1.20831 1.40070 1.18538 0.94320 0.89870 0.87564 1.21076 1.05229 1.01141 0.94999 1.20184 1.00279 0.89308 0.99175 1.18724 1.04887 0.91696 0.88468 1.18423 0.99010 0.84443 0.93535 1.19451 1.07615 0.90643 0.99298 1.86309 1.60208 1.15376 1.59995 1.23663 0.99737 0.92720 0.89350 1.23601 0.98304 0.85716 0.97883 1.86321 1.59514 1.30815 1.45734 0.97063 0.89868 0.93001 0.99430 0.95892 0.92638 0.94855 0.90724 0.78340 0.91075 0.91415 0.84403 0.84490 0.83807 0.85965 0.90332 0.90567 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.14 60.07 0.55 1.17 16 2 N -0.52 -10.65 4.70 -244.36 -1.15 -11.80 16 3 C 0.16 3.87 3.79 -4.97 -0.02 3.85 16 4 C -0.51 -14.43 9.01 -34.44 -0.31 -14.74 16 5 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 8 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 C 0.02 0.38 4.59 -3.82 -0.02 0.36 16 13 C 0.12 1.58 3.20 -26.73 -0.09 1.49 16 14 H 0.11 1.58 6.34 -51.93 -0.33 1.25 16 15 O -0.54 -8.21 13.25 -40.08 -0.53 -8.74 16 16 C 0.03 0.29 4.37 37.16 0.16 0.45 16 17 O -0.30 -3.79 10.10 -24.50 -0.25 -4.03 16 18 C 0.14 1.68 6.68 -39.27 -0.26 1.42 16 19 C -0.21 -2.06 9.03 -39.44 -0.36 -2.41 16 20 C -0.07 -0.69 9.96 -39.44 -0.39 -1.09 16 21 C 0.01 0.07 6.49 -39.15 -0.25 -0.18 16 22 C 0.09 1.01 6.49 -39.15 -0.25 0.76 16 23 C -0.15 -1.76 9.90 -39.28 -0.39 -2.15 16 24 O -0.30 -3.02 10.42 -32.87 -0.34 -3.37 16 25 C 0.02 0.12 7.26 37.40 0.27 0.39 16 26 C 0.02 0.12 7.26 37.40 0.27 0.39 16 27 O -0.31 -2.92 10.42 -33.20 -0.35 -3.26 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.79 6.76 -51.93 -0.35 1.43 16 30 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 31 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 32 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.37 4.38 9.05 45.56 0.41 4.79 16 37 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.07 0.62 7.65 -51.93 -0.40 0.22 16 39 H 0.14 1.12 6.29 -52.48 -0.33 0.79 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -34.54 366.95 -7.99 -42.53 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.83 Total: 1.72 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.18 Total: -8.44 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.38 Total: -38.51 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.47 Total: -19.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.54 -7.99 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414145193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.421 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds