Wall clock time and date at job start Tue Mar 31 2020 13:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99663 * 2 1 4 4 C 1.50708 * 109.47167 * 293.95468 * 3 2 1 5 5 H 1.07999 * 119.99651 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99944 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00008 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00032 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47311 * 89.99594 * 8 6 4 10 10 H 1.48502 * 109.46986 * 209.99814 * 8 6 4 11 11 H 1.48503 * 109.47027 * 329.99757 * 8 6 4 12 12 C 1.46890 * 111.00223 * 123.95159 * 2 1 3 13 13 C 1.53009 * 109.47140 * 66.04780 * 12 2 1 14 14 H 1.09001 * 109.46642 * 304.99907 * 13 12 2 15 15 O 1.42900 * 109.46870 * 64.99718 * 13 12 2 16 16 C 1.52999 * 109.46984 * 185.00047 * 13 12 2 17 17 O 1.42905 * 109.46728 * 175.00138 * 16 13 12 18 18 C 1.35972 * 116.99782 * 179.97438 * 17 16 13 19 19 C 1.38696 * 120.00613 * 359.72670 * 18 17 16 20 20 C 1.38175 * 120.05583 * 179.76220 * 19 18 17 21 21 C 1.38685 * 120.13750 * 0.56329 * 20 19 18 22 22 C 1.38968 * 119.91038 * 359.62718 * 21 20 19 23 23 C 1.38617 * 120.00429 * 179.97438 * 18 17 16 24 24 O 1.36109 * 120.78505 * 180.27512 * 22 21 20 25 25 C 1.43172 * 116.73300 * 342.79550 * 24 22 21 26 26 C 1.53472 * 108.24532 * 46.19034 * 25 24 22 27 27 O 1.36211 * 119.33237 * 179.53942 * 21 20 19 28 28 H 1.09003 * 109.47019 * 296.04497 * 1 2 3 29 29 H 1.09002 * 109.47421 * 56.04591 * 1 2 3 30 30 H 1.08999 * 109.46939 * 176.04991 * 1 2 3 31 31 H 1.08999 * 109.47190 * 53.95186 * 3 2 1 32 32 H 1.09003 * 109.47229 * 173.95732 * 3 2 1 33 33 H 0.96993 * 120.00217 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47675 * 306.04966 * 12 2 1 35 35 H 1.08996 * 109.47404 * 186.04571 * 12 2 1 36 36 H 0.96702 * 113.99716 * 60.00481 * 15 13 12 37 37 H 1.09000 * 109.47486 * 55.00077 * 16 13 12 38 38 H 1.09001 * 109.47362 * 294.99354 * 16 13 12 39 39 H 1.08003 * 119.97160 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.93309 * 180.27055 * 20 19 18 41 41 H 1.08004 * 119.97944 * 359.97438 * 23 18 17 42 42 H 1.08994 * 109.71129 * 165.87473 * 25 24 22 43 43 H 1.09001 * 109.70511 * 286.50715 * 25 24 22 44 44 H 1.08999 * 109.71487 * 59.92701 * 26 25 24 45 45 H 1.09005 * 109.71042 * 180.55964 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 1.7150 3.9387 -2.6622 8 14 3.0019 4.2755 -0.2320 9 1 4.4540 4.0619 -0.4574 10 1 2.6946 5.7255 -0.3238 11 1 2.6314 3.7754 1.1163 12 6 1.9955 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7695 -0.1801 16 6 2.0701 -3.0198 2.2131 17 8 1.6274 -4.3745 2.1084 18 6 1.9377 -5.2066 3.1382 19 6 2.6580 -4.7290 4.2229 20 6 2.9696 -5.5724 5.2721 21 6 2.5736 -6.9011 5.2387 22 6 1.8551 -7.3829 4.1511 23 6 1.5385 -6.5335 3.1015 24 8 1.4527 -8.6822 4.1024 25 6 2.1056 -9.5925 4.9940 26 6 2.1636 -8.9450 6.3842 27 8 2.8977 -7.7203 6.2775 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5610 1.9274 0.8309 32 1 3.0797 1.3445 0.1082 33 1 1.9895 4.8548 -2.8242 34 1 1.5612 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1756 36 1 3.2602 -2.7166 -0.1360 37 1 1.6331 -2.5623 3.1007 38 1 3.1571 -2.9978 2.2906 39 1 2.9719 -3.6959 4.2495 40 1 3.5268 -5.1973 6.1178 41 1 0.9807 -6.9061 2.2551 42 1 1.5423 -10.5241 5.0457 43 1 3.1167 -9.7927 4.6393 44 1 1.1529 -8.7383 6.7360 45 1 2.6663 -9.6154 7.0813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414145193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:21 Heat of formation + Delta-G solvation = -145.349797 kcal Electronic energy + Delta-G solvation = -26648.781756 eV Core-core repulsion = 22631.958571 eV Total energy + Delta-G solvation = -4016.823185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27555 -40.77194 -39.23793 -38.24534 -37.57445 -36.77993 -34.59784 -32.23682 -31.96753 -31.20336 -29.73652 -29.02036 -27.85895 -26.04791 -25.08395 -24.05908 -22.78775 -21.85611 -21.63768 -19.96126 -19.12115 -18.81712 -18.38532 -17.62432 -17.51954 -17.23164 -16.71424 -16.40893 -16.10647 -16.04369 -15.96357 -15.53797 -15.40517 -15.19577 -14.89451 -14.76009 -14.54068 -14.35527 -14.08482 -13.88927 -13.51032 -13.39008 -12.96268 -12.72130 -12.57375 -12.47386 -12.37024 -12.32209 -12.00427 -11.89908 -11.65204 -11.53233 -11.44532 -11.30883 -10.88643 -10.76930 -9.66131 -8.97299 -8.80423 -8.26381 -6.30452 0.15930 0.28148 1.36366 1.38516 1.48774 1.73956 2.13699 2.36007 2.46781 2.61149 3.06501 3.23319 3.28459 3.58097 3.64507 3.81493 3.88299 3.94199 3.98074 4.04473 4.12255 4.16577 4.32804 4.35400 4.39858 4.48141 4.50759 4.59251 4.64934 4.68593 4.78677 4.82086 4.90135 5.01279 5.03392 5.05510 5.21477 5.24616 5.35235 5.53992 5.86784 5.98437 6.26691 6.33918 6.44023 6.66670 6.76546 6.95024 7.32959 8.90511 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.035376 B = 0.001959 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.312367 B =14287.630080 C =14799.798078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.543 5.543 3 C 0.172 3.828 4 C -0.519 4.519 5 H 0.033 0.967 6 C 0.003 3.997 7 N -0.950 5.950 8 Si 0.953 3.047 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.247 1.247 12 C 0.026 3.974 13 C 0.121 3.879 14 H 0.094 0.906 15 O -0.562 6.562 16 C 0.032 3.968 17 O -0.319 6.319 18 C 0.129 3.871 19 C -0.201 4.201 20 C -0.074 4.074 21 C 0.000 4.000 22 C 0.082 3.918 23 C -0.171 4.171 24 O -0.324 6.324 25 C 0.013 3.987 26 C 0.015 3.985 27 O -0.321 6.321 28 H 0.025 0.975 29 H 0.045 0.955 30 H 0.072 0.928 31 H -0.009 1.009 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.384 0.616 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.154 0.846 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -26.670 24.000 36.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.267 5.267 3 C 0.045 3.955 4 C -0.557 4.557 5 H 0.051 0.949 6 C -0.194 4.194 7 N -0.591 5.591 8 Si 0.776 3.224 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.170 1.170 12 C -0.102 4.102 13 C 0.062 3.938 14 H 0.112 0.888 15 O -0.368 6.368 16 C -0.043 4.043 17 O -0.233 6.233 18 C 0.084 3.916 19 C -0.220 4.220 20 C -0.092 4.092 21 C -0.045 4.045 22 C 0.036 3.964 23 C -0.190 4.190 24 O -0.238 6.238 25 C -0.061 4.061 26 C -0.060 4.060 27 O -0.237 6.237 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.009 0.991 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.178 0.822 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.247 -26.957 23.128 35.667 hybrid contribution 0.403 1.171 0.792 1.469 sum 3.650 -25.786 23.920 35.361 Atomic orbital electron populations 1.22234 0.87797 1.01033 0.99963 1.61672 1.08081 1.14705 1.42236 1.19964 0.95346 0.85557 0.94608 1.21298 1.34889 0.97553 1.01954 0.94866 1.25931 0.97138 0.98471 0.97847 1.70065 1.48692 1.13892 1.26467 0.85641 0.79339 0.77424 0.80043 1.18838 1.21023 1.17048 1.22762 1.01642 0.93268 0.92576 1.21823 0.98269 0.89757 0.83993 0.88801 1.86631 1.24484 1.83925 1.41770 1.23677 1.01310 0.79436 0.99915 1.86125 1.74575 1.21630 1.40924 1.18648 0.95257 0.89718 0.88013 1.21293 1.04335 1.02174 0.94183 1.20500 0.99971 0.89062 0.99691 1.18930 1.04563 0.92381 0.88629 1.18517 0.99192 0.85011 0.93636 1.19561 1.08433 0.91322 0.99684 1.86277 1.60908 1.15330 1.61325 1.24019 1.00331 0.93012 0.88738 1.23930 0.98722 0.84844 0.98473 1.86297 1.60211 1.31956 1.45210 0.95618 0.93597 0.90897 0.99096 0.94839 0.92480 0.92822 0.89194 0.76769 0.89022 0.89201 0.82211 0.82435 0.84602 0.82834 0.90076 0.90363 0.82755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.14 127.69 1.17 2.62 16 2 N -0.54 -21.77 4.70 -927.02 -4.36 -26.13 16 3 C 0.17 8.01 3.79 85.56 0.32 8.34 16 4 C -0.52 -30.14 9.01 25.60 0.23 -29.91 16 5 H 0.03 2.19 7.37 -2.91 -0.02 2.17 16 6 C 0.00 0.18 5.47 84.66 0.46 0.64 16 7 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 8 Si 0.95 43.28 27.47 68.60 1.88 45.17 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.25 -10.26 6.54 99.48 0.65 -9.61 16 12 C 0.03 0.73 4.59 86.31 0.40 1.13 16 13 C 0.12 3.09 3.20 30.60 0.10 3.19 16 14 H 0.09 2.64 6.34 -2.39 -0.02 2.62 16 15 O -0.56 -16.67 13.25 -144.34 -1.91 -18.58 16 16 C 0.03 0.61 4.37 71.98 0.31 0.92 16 17 O -0.32 -7.75 10.10 -88.60 -0.90 -8.64 16 18 C 0.13 2.90 6.68 22.47 0.15 3.05 16 19 C -0.20 -3.56 9.03 22.36 0.20 -3.36 16 20 C -0.07 -1.29 9.96 22.36 0.22 -1.06 16 21 C 0.00 -0.01 6.49 22.55 0.15 0.14 16 22 C 0.08 1.79 6.49 22.55 0.15 1.94 16 23 C -0.17 -4.02 9.90 22.47 0.22 -3.80 16 24 O -0.32 -6.27 10.42 -82.57 -0.86 -7.13 16 25 C 0.01 0.13 7.26 72.14 0.52 0.66 16 26 C 0.02 0.14 7.26 72.14 0.52 0.66 16 27 O -0.32 -5.49 10.42 -83.73 -0.87 -6.36 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 2.06 6.76 -2.39 -0.02 2.05 16 30 H 0.07 2.43 6.37 -2.39 -0.02 2.42 16 31 H -0.01 -0.39 7.18 -2.39 -0.02 -0.41 16 32 H 0.03 1.49 7.36 -2.39 -0.02 1.48 16 33 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 35 H 0.09 2.26 7.93 -2.39 -0.02 2.24 16 36 H 0.38 8.55 9.05 -74.06 -0.67 7.88 16 37 H 0.09 1.37 7.67 -2.39 -0.02 1.35 16 38 H 0.09 1.31 7.65 -2.39 -0.02 1.30 16 39 H 0.16 2.01 6.29 -2.91 -0.02 1.99 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.15 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -77.80 366.95 -1.30 -79.10 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.28 Total: 17.01 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 5.13 Total: -14.85 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -4.06 Total: -85.71 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -4.54 Total: -40.71 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.17 kcal Total: -77.80 -1.30 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414145193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.250 kcal (2) G-P(sol) polarization free energy of solvation -77.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds