Wall clock time and date at job start Tue Mar 31 2020 13:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 13 13 C 1.52998 * 109.47138 * 293.95275 * 12 2 1 14 14 H 1.08999 * 109.47574 * 59.99947 * 13 12 2 15 15 O 1.42904 * 109.47070 * 299.99983 * 13 12 2 16 16 C 1.53004 * 109.47236 * 179.97438 * 13 12 2 17 17 O 1.42901 * 109.46855 * 184.99680 * 16 13 12 18 18 C 1.35976 * 116.99485 * 180.02562 * 17 16 13 19 19 C 1.38701 * 120.00923 * 359.73198 * 18 17 16 20 20 C 1.38168 * 120.05777 * 179.75873 * 19 18 17 21 21 C 1.38690 * 120.14001 * 0.56341 * 20 19 18 22 22 C 1.38964 * 119.90508 * 359.63216 * 21 20 19 23 23 C 1.38612 * 120.00345 * 180.02562 * 18 17 16 24 24 O 1.36112 * 120.78075 * 180.27810 * 22 21 20 25 25 C 1.43171 * 116.73061 * 342.78570 * 24 22 21 26 26 C 1.53459 * 108.24734 * 46.19787 * 25 24 22 27 27 O 1.36206 * 119.33506 * 179.53879 * 21 20 19 28 28 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 29 29 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 31 31 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 32 32 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 33 33 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47389 * 53.94866 * 12 2 1 35 35 H 1.08994 * 109.47622 * 173.94883 * 12 2 1 36 36 H 0.96699 * 113.99808 * 300.00031 * 15 13 12 37 37 H 1.08997 * 109.47179 * 305.00042 * 16 13 12 38 38 H 1.09002 * 109.46927 * 64.99980 * 16 13 12 39 39 H 1.08008 * 119.96879 * 0.02562 * 19 18 17 40 40 H 1.08003 * 119.93543 * 180.26684 * 20 19 18 41 41 H 1.08004 * 119.98056 * 359.96738 * 23 18 17 42 42 H 1.09004 * 109.70468 * 165.88475 * 25 24 22 43 43 H 1.09004 * 109.70685 * 286.50194 * 25 24 22 44 44 H 1.09002 * 109.71307 * 59.92364 * 26 25 24 45 45 H 1.09006 * 109.71569 * 180.55965 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 2.1754 3.4298 4.2699 10 1 2.1147 5.5734 3.1382 11 1 0.1055 4.2230 3.2864 12 6 1.9955 -0.7659 -1.1375 13 6 1.6316 -2.2426 -0.9703 14 1 0.5473 -2.3476 -0.9323 15 8 2.2010 -2.7391 0.2427 16 6 2.1794 -3.0403 -2.1554 17 8 1.7413 -4.3971 -2.0596 18 6 2.1440 -5.2465 -3.0420 19 6 2.9393 -4.7811 -4.0787 20 6 3.3531 -5.6445 -5.0748 21 6 2.9654 -6.9758 -5.0478 22 6 2.1653 -7.4436 -4.0124 23 6 1.7547 -6.5765 -3.0109 24 8 1.7790 -8.7479 -3.9653 25 6 1.8989 -9.4992 -5.1781 26 6 3.2797 -9.2154 -5.7846 27 8 3.3750 -7.8104 -6.0433 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.0796 1.3446 -0.1082 32 1 1.5610 1.9274 -0.8310 33 1 2.9863 4.9181 0.7769 34 1 1.5611 -0.3873 -2.0628 35 1 3.0797 -0.6610 -1.1756 36 1 3.1653 -2.6770 0.2788 37 1 1.8145 -2.6054 -3.0859 38 1 3.2689 -3.0085 -2.1422 39 1 3.2389 -3.7437 -4.1049 40 1 3.9759 -5.2809 -5.8788 41 1 1.1319 -6.9379 -2.2059 42 1 1.8040 -10.5634 -4.9621 43 1 1.1204 -9.1948 -5.8777 44 1 4.0581 -9.5136 -5.0823 45 1 3.3929 -9.7693 -6.7166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414145195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:24 Heat of formation + Delta-G solvation = -148.200755 kcal Electronic energy + Delta-G solvation = -26595.092814 eV Core-core repulsion = 22578.146003 eV Total energy + Delta-G solvation = -4016.946812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27596 -40.77086 -39.20512 -38.24383 -37.54805 -36.73910 -34.61366 -32.20273 -31.95889 -31.11204 -29.27823 -28.96516 -27.84351 -26.13000 -25.18618 -24.08506 -22.99360 -21.85907 -21.65750 -19.95656 -18.97227 -18.49916 -18.38222 -17.65165 -17.48251 -17.23144 -16.78439 -16.45371 -16.07487 -16.02028 -15.90938 -15.53005 -15.38372 -15.10777 -14.96545 -14.87982 -14.36465 -14.20417 -14.05316 -13.79262 -13.41652 -13.23292 -12.93668 -12.72898 -12.55791 -12.53534 -12.51451 -12.37845 -12.01390 -11.98529 -11.63613 -11.49882 -11.39927 -11.30597 -10.85139 -10.60196 -9.66201 -8.97034 -8.80642 -8.19908 -6.29246 0.15767 0.27898 1.42039 1.44929 1.52792 1.73613 2.13387 2.40207 2.48185 2.61101 3.12585 3.27162 3.30464 3.59007 3.64726 3.81872 3.87747 3.94547 3.98501 4.04518 4.12109 4.16430 4.32905 4.35267 4.39848 4.49912 4.53247 4.59589 4.71229 4.72578 4.78587 4.82449 5.01294 5.05028 5.09214 5.18194 5.22008 5.32234 5.34900 5.65599 5.86842 6.05387 6.26640 6.31211 6.43140 6.63093 6.86171 6.93506 7.40216 8.90608 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.042421 B = 0.001857 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.884739 B =15072.895622 C =15450.007332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.027 3.973 13 C 0.126 3.874 14 H 0.098 0.902 15 O -0.558 6.558 16 C 0.032 3.968 17 O -0.317 6.317 18 C 0.129 3.871 19 C -0.203 4.203 20 C -0.074 4.074 21 C 0.000 4.000 22 C 0.083 3.917 23 C -0.169 4.169 24 O -0.323 6.323 25 C 0.014 3.986 26 C 0.015 3.985 27 O -0.321 6.321 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.008 0.992 32 H -0.035 1.035 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -27.143 -16.005 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.101 4.101 13 C 0.066 3.934 14 H 0.115 0.885 15 O -0.364 6.364 16 C -0.043 4.043 17 O -0.230 6.230 18 C 0.083 3.917 19 C -0.221 4.221 20 C -0.093 4.093 21 C -0.044 4.044 22 C 0.037 3.963 23 C -0.188 4.188 24 O -0.238 6.238 25 C -0.061 4.061 26 C -0.060 4.060 27 O -0.237 6.237 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.027 0.973 32 H -0.018 1.018 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.172 0.828 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.608 -27.416 -15.322 31.413 hybrid contribution 0.260 1.265 -0.337 1.334 sum 0.867 -26.151 -15.659 30.493 Atomic orbital electron populations 1.22236 0.87851 1.00814 1.00016 1.61878 1.08006 1.15089 1.41504 1.19408 0.93882 0.83591 0.94935 1.21447 1.34900 0.97473 1.02501 0.92199 1.25878 0.95066 0.98035 1.00613 1.70063 1.39291 1.11899 1.36088 0.85462 0.78762 0.77191 0.79349 1.19486 1.20751 1.19397 1.22685 1.01104 0.93610 0.92731 1.21772 0.99037 0.89478 0.83120 0.88460 1.86596 1.26453 1.84871 1.38487 1.23653 1.00927 0.79363 1.00376 1.86116 1.70974 1.20633 1.45315 1.18657 0.94838 0.89556 0.88646 1.21286 1.03326 1.01994 0.95521 1.20486 0.99502 0.89795 0.99475 1.18914 1.00892 0.92587 0.92053 1.18506 0.96638 0.85050 0.96097 1.19553 1.06986 0.90342 1.01929 1.86278 1.81798 1.18925 1.36750 1.24020 0.97853 0.98864 0.85347 1.23934 0.97267 0.79342 1.05462 1.86296 1.81961 1.17849 1.37575 0.96805 0.90683 0.92688 0.97341 1.01774 0.92682 0.93831 0.90224 0.76855 0.89231 0.89529 0.82502 0.82530 0.84416 0.82781 0.90050 0.90366 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.16 127.69 1.17 2.69 16 2 N -0.54 -22.97 4.62 -927.05 -4.28 -27.25 16 3 C 0.21 10.93 4.72 85.56 0.40 11.34 16 4 C -0.52 -29.90 8.51 25.60 0.22 -29.69 16 5 H 0.06 3.39 7.10 -2.91 -0.02 3.37 16 6 C 0.00 0.12 5.46 84.65 0.46 0.58 16 7 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 8 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 C 0.03 0.88 4.62 86.30 0.40 1.28 16 13 C 0.13 3.43 3.12 30.60 0.10 3.52 16 14 H 0.10 2.80 6.47 -2.39 -0.02 2.78 16 15 O -0.56 -17.17 13.17 -144.36 -1.90 -19.07 16 16 C 0.03 0.68 4.37 71.98 0.31 1.00 16 17 O -0.32 -8.06 10.10 -88.66 -0.90 -8.95 16 18 C 0.13 3.03 6.68 22.47 0.15 3.18 16 19 C -0.20 -3.91 9.03 22.36 0.20 -3.71 16 20 C -0.07 -1.39 9.96 22.36 0.22 -1.17 16 21 C 0.00 0.01 6.49 22.55 0.15 0.15 16 22 C 0.08 1.86 6.49 22.55 0.15 2.00 16 23 C -0.17 -4.08 9.90 22.47 0.22 -3.85 16 24 O -0.32 -6.35 10.42 -82.59 -0.86 -7.21 16 25 C 0.01 0.14 7.26 72.14 0.52 0.66 16 26 C 0.01 0.14 7.26 72.14 0.52 0.67 16 27 O -0.32 -5.72 10.42 -83.67 -0.87 -6.59 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 2.49 6.30 -2.38 -0.02 2.48 16 30 H 0.05 2.33 6.86 -2.39 -0.02 2.32 16 31 H 0.01 0.47 7.93 -2.39 -0.02 0.46 16 32 H -0.04 -2.00 8.12 -2.38 -0.02 -2.02 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 35 H 0.08 2.45 7.93 -2.39 -0.02 2.43 16 36 H 0.38 9.34 9.05 -74.06 -0.67 8.67 16 37 H 0.09 1.57 7.65 -2.39 -0.02 1.55 16 38 H 0.09 1.51 7.67 -2.39 -0.02 1.50 16 39 H 0.16 2.33 6.29 -2.91 -0.02 2.32 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.15 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.16 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -73.40 370.56 -0.96 -74.36 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.34 Total: 14.99 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 5.20 Total: -11.34 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -4.00 Total: -82.74 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -4.53 Total: -41.83 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -73.40 -0.96 -74.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414145195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.839 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds