Wall clock time and date at job start Tue Mar 31 2020 13:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34753 * 117.00177 * 2 1 4 4 O 1.21512 * 120.00042 * 0.02562 * 3 2 1 5 5 C 1.47400 * 120.00264 * 179.97438 * 3 2 1 6 6 C 1.39775 * 120.19458 * 0.28116 * 5 3 2 7 7 C 1.37764 * 119.89824 * 180.33805 * 6 5 3 8 8 C 1.38564 * 120.31233 * 359.66094 * 7 6 5 9 9 C 1.38053 * 120.39963 * 0.02562 * 8 7 6 10 10 C 1.38711 * 120.09379 * 0.02754 * 9 8 7 11 11 O 1.35631 * 120.15742 * 179.97438 * 10 9 8 12 12 C 1.42897 * 117.00065 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.47164 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47164 * 55.00068 * 13 12 11 15 15 O 1.42903 * 109.47171 * 294.99802 * 13 12 11 16 16 C 1.53003 * 109.47376 * 175.00429 * 13 12 11 17 17 N 1.46900 * 109.47407 * 184.99739 * 16 13 12 18 18 C 1.46906 * 110.99546 * 66.04524 * 17 16 13 19 19 C 1.46894 * 111.00089 * 189.99447 * 17 16 13 20 20 C 1.50701 * 109.47049 * 170.00217 * 19 17 16 21 21 H 1.08000 * 119.99881 * 0.02562 * 20 19 17 22 22 C 1.37881 * 120.00015 * 180.02562 * 20 19 17 23 23 N 1.31516 * 120.00075 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99779 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47087 * 90.00244 * 24 22 20 26 26 H 1.48505 * 109.46761 * 209.99680 * 24 22 20 27 27 H 1.48495 * 109.47549 * 329.99797 * 24 22 20 28 28 H 1.09002 * 109.47345 * 300.00181 * 1 2 3 29 29 H 1.09008 * 109.46971 * 59.99656 * 1 2 3 30 30 H 1.08999 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.05228 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.84665 * 179.67552 * 7 6 5 33 33 H 1.07996 * 119.80097 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.95377 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.47098 * 60.00100 * 12 11 10 36 36 H 1.08997 * 109.47681 * 299.99812 * 12 11 10 37 37 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 38 38 H 1.09005 * 109.46682 * 304.99749 * 16 13 12 39 39 H 1.08999 * 109.47221 * 64.99915 * 16 13 12 40 40 H 1.08991 * 109.47276 * 60.00231 * 18 17 16 41 41 H 1.09005 * 109.46723 * 179.97438 * 18 17 16 42 42 H 1.09001 * 109.47097 * 299.99420 * 18 17 16 43 43 H 1.08995 * 109.47552 * 290.00132 * 19 17 16 44 44 H 1.09000 * 109.46814 * 50.00455 * 19 17 16 45 45 H 0.96996 * 120.00172 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1082 -0.0048 7 6 5.6763 0.1874 0.0028 8 6 6.3058 1.4218 0.0087 9 6 5.5623 2.5850 0.0076 10 6 4.1765 2.5248 0.0010 11 8 3.4448 3.6668 0.0004 12 6 4.1669 4.8999 0.0073 13 6 3.1798 6.0689 0.0048 14 1 2.4906 5.9642 0.8427 15 8 2.4440 6.0685 -1.2202 16 6 3.9480 7.3854 0.1378 17 7 2.9962 8.4981 0.2557 18 6 2.2354 8.4093 1.5092 19 6 3.6829 9.7921 0.1473 20 6 2.6621 10.8940 0.0259 21 1 1.6085 10.6567 0.0293 22 6 3.0731 12.2050 -0.0897 23 7 2.1822 13.1665 -0.1962 24 14 4.8955 12.6152 -0.0963 25 1 5.4027 12.5935 -1.4918 26 1 5.1007 13.9667 0.4840 27 1 5.6318 11.6117 0.7136 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8149 -0.8562 -0.0090 32 1 6.2668 -0.7170 0.0039 33 1 7.3844 1.4742 0.0142 34 1 6.0604 3.5433 0.0118 35 1 4.7983 4.9561 -0.8794 36 1 4.7894 4.9515 0.9005 37 1 2.9948 6.1585 -2.0099 38 1 4.5779 7.3503 1.0267 39 1 4.5717 7.5328 -0.7439 40 1 2.9223 8.4460 2.3546 41 1 1.5385 9.2452 1.5713 42 1 1.6808 7.4711 1.5320 43 1 4.2908 9.9565 1.0370 44 1 4.3230 9.7909 -0.7350 45 1 2.4714 14.0888 -0.2778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414161318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:03 Heat of formation + Delta-G solvation = -156.397195 kcal Electronic energy + Delta-G solvation = -27067.718134 eV Core-core repulsion = 23050.415898 eV Total energy + Delta-G solvation = -4017.302236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82027 -40.74539 -39.46472 -38.28155 -37.39287 -36.94295 -34.62056 -32.75177 -32.00498 -30.89824 -29.73282 -28.64873 -27.87229 -25.79831 -25.06210 -23.44687 -22.54024 -22.02960 -21.72828 -19.48311 -19.04449 -18.56051 -18.05638 -17.70528 -17.40415 -17.29459 -16.75237 -16.23430 -16.17308 -16.04585 -15.89576 -15.52758 -15.28514 -14.82609 -14.58376 -14.39894 -14.35129 -14.10283 -13.83245 -13.50460 -13.35939 -13.12574 -12.94764 -12.72444 -12.57737 -12.45736 -12.38091 -12.28930 -12.02104 -11.90789 -11.79675 -11.70599 -11.53702 -11.38217 -10.93470 -10.78619 -10.14862 -9.32066 -9.00819 -8.28044 -6.32495 -0.30376 0.37765 1.34775 1.37423 1.47766 1.54480 1.70915 1.95367 2.34690 2.75245 3.04469 3.15352 3.51959 3.65804 3.77228 3.81537 3.86858 4.01435 4.09643 4.20244 4.26747 4.30697 4.30849 4.35376 4.39807 4.42604 4.51470 4.59919 4.63002 4.68895 4.85675 4.87072 4.95906 4.99632 5.11854 5.19148 5.25317 5.36369 5.45036 5.51477 5.73328 5.96107 6.27075 6.33108 6.64038 6.74286 6.76044 6.90948 7.30895 8.89080 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.002463 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.915437 B =11364.006633 C =12492.213926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.498 3.502 4 O -0.526 6.526 5 C -0.197 4.197 6 C -0.024 4.024 7 C -0.169 4.169 8 C -0.033 4.033 9 C -0.229 4.229 10 C 0.168 3.832 11 O -0.303 6.303 12 C 0.027 3.973 13 C 0.122 3.878 14 H 0.085 0.915 15 O -0.562 6.562 16 C 0.029 3.971 17 N -0.544 5.544 18 C 0.039 3.961 19 C 0.173 3.827 20 C -0.520 4.520 21 H 0.031 0.969 22 C 0.003 3.997 23 N -0.951 5.951 24 Si 0.954 3.046 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.246 1.246 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.382 0.618 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.046 0.954 42 H 0.067 0.933 43 H -0.007 1.007 44 H 0.035 0.965 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.482 -32.909 1.136 35.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.345 3.655 4 O -0.416 6.416 5 C -0.199 4.199 6 C -0.042 4.042 7 C -0.187 4.187 8 C -0.051 4.051 9 C -0.248 4.248 10 C 0.121 3.879 11 O -0.215 6.215 12 C -0.048 4.048 13 C 0.062 3.938 14 H 0.103 0.897 15 O -0.368 6.368 16 C -0.099 4.099 17 N -0.268 5.268 18 C -0.109 4.109 19 C 0.046 3.954 20 C -0.558 4.558 21 H 0.049 0.951 22 C -0.194 4.194 23 N -0.592 5.592 24 Si 0.777 3.223 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.170 1.170 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.172 0.828 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.230 0.770 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.053 0.947 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.160 -32.491 1.137 34.373 hybrid contribution 0.732 1.308 0.305 1.530 sum 11.892 -31.182 1.442 33.404 Atomic orbital electron populations 1.23515 0.74764 1.05767 1.02132 1.86496 1.24785 1.31746 1.84501 1.21422 0.89759 0.81545 0.72814 1.90942 1.67359 1.36916 1.46410 1.18682 0.88911 0.93310 1.18986 1.21575 0.94571 0.96607 0.91404 1.21482 0.93654 0.99547 1.03974 1.21704 1.01939 0.91002 0.90422 1.21550 0.90712 1.02245 1.10278 1.19444 0.91272 0.85418 0.91804 1.86354 1.35784 1.12834 1.86545 1.23749 0.95137 0.81636 1.04309 1.21793 0.93121 0.90500 0.88364 0.89683 1.86669 1.38293 1.96015 1.15803 1.22743 0.94030 0.90485 1.02686 1.61661 1.26795 1.02383 1.35968 1.22208 0.97930 1.01281 0.89468 1.19959 0.93297 0.86776 0.95332 1.21289 0.93738 0.91247 1.49549 0.95058 1.25952 1.03258 0.95904 0.94276 1.70072 1.36348 1.00697 1.52071 0.85617 0.79141 0.77984 0.79557 1.18768 1.20915 1.16984 0.92535 0.92609 0.84254 0.82363 0.81615 0.81567 0.82779 0.88877 0.88775 0.76967 0.92702 0.88969 0.95474 0.93496 0.91480 0.98987 0.94738 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -7.70 9.82 -56.64 -0.56 -8.26 16 3 C 0.50 13.80 7.89 70.23 0.55 14.36 16 4 O -0.53 -19.04 14.95 26.80 0.40 -18.64 16 5 C -0.20 -4.49 5.89 -20.02 -0.12 -4.61 16 6 C -0.02 -0.34 9.61 22.53 0.22 -0.12 16 7 C -0.17 -1.57 10.02 22.24 0.22 -1.35 16 8 C -0.03 -0.31 10.03 22.30 0.22 -0.09 16 9 C -0.23 -3.43 9.03 22.34 0.20 -3.22 16 10 C 0.17 3.88 6.70 22.86 0.15 4.04 16 11 O -0.30 -8.63 8.17 -64.75 -0.53 -9.16 16 12 C 0.03 0.59 4.37 71.98 0.31 0.90 16 13 C 0.12 3.55 3.20 30.60 0.10 3.64 16 14 H 0.09 2.84 6.34 -2.39 -0.02 2.82 16 15 O -0.56 -19.06 13.25 -144.35 -1.91 -20.98 16 16 C 0.03 0.87 4.59 86.30 0.40 1.27 16 17 N -0.54 -22.87 4.70 -927.05 -4.36 -27.23 16 18 C 0.04 1.60 9.14 127.69 1.17 2.77 16 19 C 0.17 8.25 3.79 85.56 0.32 8.57 16 20 C -0.52 -30.77 9.01 25.60 0.23 -30.54 16 21 H 0.03 2.10 7.37 -2.91 -0.02 2.08 16 22 C 0.00 0.17 5.47 84.66 0.46 0.64 16 23 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 24 Si 0.95 43.67 27.47 68.60 1.88 45.56 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.16 1.64 7.61 -2.91 -0.02 1.62 16 32 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.15 1.68 6.30 -2.91 -0.02 1.66 16 35 H 0.09 1.51 7.66 -2.39 -0.02 1.49 16 36 H 0.09 1.57 7.66 -2.39 -0.02 1.55 16 37 H 0.38 9.82 9.05 -74.06 -0.67 9.15 16 38 H 0.05 1.44 8.12 -2.38 -0.02 1.42 16 39 H 0.09 2.44 7.93 -2.39 -0.02 2.42 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 2.20 6.76 -2.38 -0.02 2.19 16 42 H 0.07 2.48 6.37 -2.39 -0.02 2.46 16 43 H -0.01 -0.35 7.18 -2.39 -0.02 -0.37 16 44 H 0.03 1.57 7.36 -2.39 -0.02 1.55 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -84.73 375.08 1.16 -83.58 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.28 Total: 17.50 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.65 Total: -2.05 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -4.06 Total: -87.54 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -2.60 Total: -57.03 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -84.73 1.16 -83.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414161318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.822 kcal (2) G-P(sol) polarization free energy of solvation -84.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds