Wall clock time and date at job start Tue Mar 31 2020 13:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34756 * 116.99811 * 2 1 4 4 O 1.21512 * 119.99535 * 359.97438 * 3 2 1 5 5 C 1.47396 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.39775 * 120.20264 * 0.27263 * 5 3 2 7 7 C 1.37756 * 119.90246 * 180.34519 * 6 5 3 8 8 C 1.38565 * 120.30919 * 359.65010 * 7 6 5 9 9 C 1.38051 * 120.40448 * 0.02628 * 8 7 6 10 10 C 1.38711 * 120.08791 * 0.02562 * 9 8 7 11 11 O 1.35638 * 120.15173 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00107 * 359.97438 * 11 10 9 13 13 C 1.53002 * 109.47240 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47070 * 305.00002 * 13 12 11 15 15 O 1.42903 * 109.46923 * 65.00166 * 13 12 11 16 16 C 1.53000 * 109.47233 * 184.99627 * 13 12 11 17 17 N 1.46905 * 109.47123 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99713 * 293.95674 * 17 16 13 19 19 C 1.46891 * 110.99898 * 170.00473 * 17 16 13 20 20 C 1.50706 * 109.47049 * 190.00167 * 19 17 16 21 21 H 1.07995 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99772 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00103 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47097 * 90.00210 * 24 22 20 26 26 H 1.48503 * 109.47186 * 209.99572 * 24 22 20 27 27 H 1.48499 * 109.47341 * 330.00010 * 24 22 20 28 28 H 1.09003 * 109.46760 * 60.00631 * 1 2 3 29 29 H 1.09005 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47489 * 300.00653 * 1 2 3 31 31 H 1.08004 * 120.04334 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.84514 * 179.67703 * 7 6 5 33 33 H 1.08002 * 119.79570 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.95204 * 179.97438 * 9 8 7 35 35 H 1.09008 * 109.47321 * 59.99896 * 12 11 10 36 36 H 1.08997 * 109.47221 * 299.99826 * 12 11 10 37 37 H 0.96700 * 114.00234 * 59.99815 * 15 13 12 38 38 H 1.08992 * 109.47399 * 300.00166 * 16 13 12 39 39 H 1.09004 * 109.46724 * 60.00652 * 16 13 12 40 40 H 1.09002 * 109.47298 * 60.00428 * 18 17 16 41 41 H 1.09011 * 109.46893 * 179.97438 * 18 17 16 42 42 H 1.08994 * 109.47518 * 299.99556 * 18 17 16 43 43 H 1.09008 * 109.47131 * 309.99933 * 19 17 16 44 44 H 1.08997 * 109.47884 * 70.00206 * 19 17 16 45 45 H 0.96997 * 120.00316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 -0.0005 5 6 3.5357 1.2779 0.0006 6 6 4.3011 0.1083 -0.0046 7 6 5.6764 0.1876 0.0031 8 6 6.3056 1.4221 0.0088 9 6 5.5622 2.5853 0.0072 10 6 4.1764 2.5249 0.0005 11 8 3.4446 3.6669 -0.0005 12 6 4.1666 4.9000 0.0062 13 6 3.1795 6.0690 0.0033 14 1 2.4994 5.9682 -0.8425 15 8 2.4305 6.0630 1.2203 16 6 3.9491 7.3861 -0.1152 17 7 3.0013 8.5085 -0.1173 18 6 2.1606 8.4853 -1.3217 19 6 3.7049 9.7918 0.0088 20 6 2.7036 10.8921 0.2494 21 1 1.6500 10.6612 0.3027 22 6 3.1327 12.1936 0.4014 23 7 2.2589 13.1539 0.6108 24 14 4.9552 12.5928 0.3098 25 1 5.3253 12.8972 -1.0958 26 1 5.2473 13.7714 1.1648 27 1 5.7419 11.4275 0.7876 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.8149 -0.8561 -0.0087 32 1 6.2668 -0.7167 0.0044 33 1 7.3844 1.4746 0.0144 34 1 6.0602 3.5436 0.0121 35 1 4.7982 4.9561 -0.8805 36 1 4.7890 4.9518 0.8995 37 1 2.9727 6.1493 2.0163 38 1 4.6291 7.4869 0.7305 39 1 4.5204 7.3907 -1.0435 40 1 1.5976 7.5525 -1.3539 41 1 1.4679 9.3267 -1.2976 42 1 2.7920 8.5594 -2.2071 43 1 4.4005 9.7439 0.8468 44 1 4.2557 9.9961 -0.9093 45 1 2.5607 14.0694 0.7181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414161572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:06 Heat of formation + Delta-G solvation = -129.055025 kcal Electronic energy + Delta-G solvation = -27070.475076 eV Core-core repulsion = 23054.358485 eV Total energy + Delta-G solvation = -4016.116591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99214 -39.84061 -38.35482 -37.26817 -36.41516 -35.47744 -32.49362 -32.03279 -30.94751 -29.97170 -28.05715 -27.78415 -26.53267 -24.48310 -24.14016 -22.38833 -21.51622 -20.93652 -20.20408 -18.67348 -17.76694 -17.21225 -16.82703 -16.72251 -16.40420 -16.32422 -15.44495 -15.33844 -15.00636 -14.96174 -14.67288 -14.24642 -13.87412 -13.69392 -13.51942 -13.37281 -13.18844 -12.69981 -12.63405 -12.44303 -12.23519 -12.02191 -11.74685 -11.68216 -11.34825 -11.19862 -11.01244 -10.92775 -10.77756 -10.71533 -10.49502 -10.25758 -9.94661 -9.67555 -9.50427 -9.26787 -8.61868 -8.58916 -7.39632 -6.05437 -4.02856 0.40369 1.00993 2.39486 2.49852 2.78949 3.25773 3.33507 3.34249 3.42307 4.29770 4.38151 4.40188 4.46520 4.55608 4.65069 4.73931 4.88748 4.89947 4.93867 5.00583 5.01854 5.07640 5.23498 5.27037 5.29953 5.33972 5.43183 5.44915 5.73633 5.82121 5.83721 6.01101 6.06473 6.17098 6.21696 6.23370 6.28904 6.68125 6.81135 6.96315 7.06667 7.56151 7.68774 7.85854 7.91977 8.05125 8.64836 9.04724 9.55578 11.07790 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002466 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.014218 B =11353.525725 C =12492.515449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.501 3.499 4 O -0.475 6.475 5 C -0.166 4.166 6 C -0.025 4.025 7 C -0.178 4.178 8 C -0.042 4.042 9 C -0.226 4.226 10 C 0.196 3.804 11 O -0.268 6.268 12 C 0.020 3.980 13 C 0.119 3.881 14 H 0.107 0.893 15 O -0.531 6.531 16 C 0.025 3.975 17 N -0.518 5.518 18 C 0.033 3.967 19 C 0.162 3.838 20 C -0.508 4.508 21 H 0.082 0.918 22 C 0.067 3.933 23 N -0.899 5.899 24 Si 0.876 3.124 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.268 1.268 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.369 0.631 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.010 0.990 43 H 0.027 0.973 44 H -0.017 1.017 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 -30.189 -2.153 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.345 3.655 4 O -0.361 6.361 5 C -0.168 4.168 6 C -0.043 4.043 7 C -0.196 4.196 8 C -0.060 4.060 9 C -0.245 4.245 10 C 0.147 3.853 11 O -0.179 6.179 12 C -0.056 4.056 13 C 0.058 3.942 14 H 0.125 0.875 15 O -0.334 6.334 16 C -0.105 4.105 17 N -0.242 5.242 18 C -0.115 4.115 19 C 0.036 3.964 20 C -0.547 4.547 21 H 0.100 0.900 22 C -0.134 4.134 23 N -0.538 5.538 24 Si 0.704 3.296 25 H -0.204 1.204 26 H -0.211 1.211 27 H -0.193 1.193 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.215 0.785 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.029 0.971 43 H 0.045 0.955 44 H 0.001 0.999 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.422 -29.722 -2.127 30.482 hybrid contribution 2.183 0.666 -0.435 2.323 sum 8.605 -29.056 -2.562 30.411 Atomic orbital electron populations 1.23246 0.75993 1.03464 1.02846 1.86500 1.23523 1.32950 1.85101 1.20883 0.88754 0.81694 0.74195 1.90976 1.66144 1.35366 1.43622 1.18442 0.89752 0.91919 1.16715 1.21322 0.93722 0.97134 0.92113 1.21033 0.94291 0.98108 1.06207 1.21229 1.00252 0.91778 0.92718 1.21295 0.92043 1.00512 1.10641 1.19115 0.89976 0.86139 0.90036 1.86419 1.34093 1.11702 1.85647 1.23876 0.96299 0.83347 1.02114 1.21894 0.92854 0.89427 0.90015 0.87512 1.86705 1.36388 1.95808 1.14510 1.22681 0.94914 0.92148 1.00733 1.61824 1.21604 1.02378 1.38352 1.22326 0.97550 1.02184 0.89469 1.20218 0.94594 0.86805 0.94762 1.21034 0.95245 0.89771 1.48609 0.89971 1.24908 0.97284 0.96267 0.94945 1.69891 1.33707 1.00551 1.49689 0.86855 0.86386 0.78180 0.78220 1.20399 1.21113 1.19327 0.91832 0.88157 0.91761 0.83938 0.85031 0.85067 0.84409 0.90988 0.91273 0.78510 0.90829 0.94897 0.92937 0.89903 0.97136 0.95486 0.99945 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -3.88 9.82 -40.64 -0.40 -4.28 16 3 C 0.50 6.68 7.89 34.46 0.27 6.95 16 4 O -0.47 -8.03 14.95 -26.60 -0.40 -8.43 16 5 C -0.17 -1.93 5.89 -104.86 -0.62 -2.55 16 6 C -0.02 -0.21 9.61 -39.18 -0.38 -0.58 16 7 C -0.18 -1.20 10.02 -39.64 -0.40 -1.60 16 8 C -0.04 -0.29 10.03 -39.53 -0.40 -0.69 16 9 C -0.23 -2.03 9.03 -39.48 -0.36 -2.39 16 10 C 0.20 2.35 6.70 -38.67 -0.26 2.09 16 11 O -0.27 -3.80 8.17 -44.44 -0.36 -4.16 16 12 C 0.02 0.23 4.37 37.16 0.16 0.39 16 13 C 0.12 1.75 3.12 -26.73 -0.08 1.66 16 14 H 0.11 1.72 6.55 -51.93 -0.34 1.38 16 15 O -0.53 -8.93 13.17 -40.08 -0.53 -9.45 16 16 C 0.02 0.40 4.62 -3.82 -0.02 0.38 16 17 N -0.52 -10.91 4.62 -244.37 -1.13 -12.03 16 18 C 0.03 0.66 9.14 60.06 0.55 1.20 16 19 C 0.16 3.93 3.79 -4.98 -0.02 3.91 16 20 C -0.51 -14.58 9.01 -34.44 -0.31 -14.89 16 21 H 0.08 2.59 7.37 -52.49 -0.39 2.20 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 24 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 0.91 7.61 -52.48 -0.40 0.51 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.14 1.02 6.30 -52.49 -0.33 0.69 16 35 H 0.07 0.70 7.66 -51.92 -0.40 0.30 16 36 H 0.07 0.66 7.66 -51.93 -0.40 0.27 16 37 H 0.37 4.88 9.05 45.56 0.41 5.30 16 38 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 39 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.05 0.94 6.47 -51.93 -0.34 0.61 16 41 H 0.08 1.84 6.76 -51.92 -0.35 1.48 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.03 0.65 6.99 -51.92 -0.36 0.29 16 44 H -0.02 -0.41 7.55 -51.93 -0.39 -0.80 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -36.16 375.17 -7.76 -43.92 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.82 Total: 1.85 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.88 Total: -2.86 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.36 Total: -38.99 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.69 Total: -26.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.16 -7.76 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414161572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.133 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds