Wall clock time and date at job start Tue Mar 31 2020 13:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34756 * 116.99811 * 2 1 4 4 O 1.21512 * 119.99535 * 359.97438 * 3 2 1 5 5 C 1.47396 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.39775 * 120.20264 * 0.27263 * 5 3 2 7 7 C 1.37756 * 119.90246 * 180.34519 * 6 5 3 8 8 C 1.38565 * 120.30919 * 359.65010 * 7 6 5 9 9 C 1.38051 * 120.40448 * 0.02628 * 8 7 6 10 10 C 1.38711 * 120.08791 * 0.02562 * 9 8 7 11 11 O 1.35638 * 120.15173 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00107 * 359.97438 * 11 10 9 13 13 C 1.53002 * 109.47240 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47070 * 305.00002 * 13 12 11 15 15 O 1.42903 * 109.46923 * 65.00166 * 13 12 11 16 16 C 1.53000 * 109.47233 * 184.99627 * 13 12 11 17 17 N 1.46905 * 109.47123 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99713 * 293.95674 * 17 16 13 19 19 C 1.46891 * 110.99898 * 170.00473 * 17 16 13 20 20 C 1.50706 * 109.47049 * 190.00167 * 19 17 16 21 21 H 1.07995 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99772 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00103 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47097 * 90.00210 * 24 22 20 26 26 H 1.48503 * 109.47186 * 209.99572 * 24 22 20 27 27 H 1.48499 * 109.47341 * 330.00010 * 24 22 20 28 28 H 1.09003 * 109.46760 * 60.00631 * 1 2 3 29 29 H 1.09005 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47489 * 300.00653 * 1 2 3 31 31 H 1.08004 * 120.04334 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.84514 * 179.67703 * 7 6 5 33 33 H 1.08002 * 119.79570 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.95204 * 179.97438 * 9 8 7 35 35 H 1.09008 * 109.47321 * 59.99896 * 12 11 10 36 36 H 1.08997 * 109.47221 * 299.99826 * 12 11 10 37 37 H 0.96700 * 114.00234 * 59.99815 * 15 13 12 38 38 H 1.08992 * 109.47399 * 300.00166 * 16 13 12 39 39 H 1.09004 * 109.46724 * 60.00652 * 16 13 12 40 40 H 1.09002 * 109.47298 * 60.00428 * 18 17 16 41 41 H 1.09011 * 109.46893 * 179.97438 * 18 17 16 42 42 H 1.08994 * 109.47518 * 299.99556 * 18 17 16 43 43 H 1.09008 * 109.47131 * 309.99933 * 19 17 16 44 44 H 1.08997 * 109.47884 * 70.00206 * 19 17 16 45 45 H 0.96997 * 120.00316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 -0.0005 5 6 3.5357 1.2779 0.0006 6 6 4.3011 0.1083 -0.0046 7 6 5.6764 0.1876 0.0031 8 6 6.3056 1.4221 0.0088 9 6 5.5622 2.5853 0.0072 10 6 4.1764 2.5249 0.0005 11 8 3.4446 3.6669 -0.0005 12 6 4.1666 4.9000 0.0062 13 6 3.1795 6.0690 0.0033 14 1 2.4994 5.9682 -0.8425 15 8 2.4305 6.0630 1.2203 16 6 3.9491 7.3861 -0.1152 17 7 3.0013 8.5085 -0.1173 18 6 2.1606 8.4853 -1.3217 19 6 3.7049 9.7918 0.0088 20 6 2.7036 10.8921 0.2494 21 1 1.6500 10.6612 0.3027 22 6 3.1327 12.1936 0.4014 23 7 2.2589 13.1539 0.6108 24 14 4.9552 12.5928 0.3098 25 1 5.3253 12.8972 -1.0958 26 1 5.2473 13.7714 1.1648 27 1 5.7419 11.4275 0.7876 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.8149 -0.8561 -0.0087 32 1 6.2668 -0.7167 0.0044 33 1 7.3844 1.4746 0.0144 34 1 6.0602 3.5436 0.0121 35 1 4.7982 4.9561 -0.8805 36 1 4.7890 4.9518 0.8995 37 1 2.9727 6.1493 2.0163 38 1 4.6291 7.4869 0.7305 39 1 4.5204 7.3907 -1.0435 40 1 1.5976 7.5525 -1.3539 41 1 1.4679 9.3267 -1.2976 42 1 2.7920 8.5594 -2.2071 43 1 4.4005 9.7439 0.8468 44 1 4.2557 9.9961 -0.9093 45 1 2.5607 14.0694 0.7181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414161572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:06 Heat of formation + Delta-G solvation = -156.323734 kcal Electronic energy + Delta-G solvation = -27071.657536 eV Core-core repulsion = 23054.358485 eV Total energy + Delta-G solvation = -4017.299050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81843 -40.74225 -39.46016 -38.28060 -37.39047 -36.91843 -34.61470 -32.75110 -32.00438 -30.89654 -29.74012 -28.64742 -27.85470 -25.79820 -25.06125 -23.44514 -22.53581 -22.02559 -21.71501 -19.48211 -19.04057 -18.55846 -18.05241 -17.69543 -17.40290 -17.28818 -16.75871 -16.21874 -16.19584 -16.00757 -15.89463 -15.52821 -15.30051 -14.82329 -14.55202 -14.39731 -14.35051 -14.11814 -13.82743 -13.46824 -13.36991 -13.12501 -12.95040 -12.72582 -12.61346 -12.52431 -12.39267 -12.27556 -12.01380 -11.81404 -11.79595 -11.67627 -11.53260 -11.38082 -10.92350 -10.79610 -10.14779 -9.31963 -9.01462 -8.27924 -6.32286 -0.30294 0.37861 1.34592 1.37303 1.48090 1.54578 1.71041 1.95517 2.34802 2.75341 3.04279 3.15778 3.53341 3.66352 3.77190 3.81375 3.87672 4.01782 4.09852 4.20340 4.27222 4.30760 4.30963 4.35511 4.39904 4.43320 4.51593 4.59691 4.63868 4.68951 4.85887 4.87211 4.96341 4.99156 5.11958 5.19249 5.25399 5.36457 5.45118 5.52156 5.73397 5.96383 6.27528 6.33366 6.64250 6.74552 6.76133 6.91341 7.31089 8.89246 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002466 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.014218 B =11353.525725 C =12492.515449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.498 3.502 4 O -0.526 6.526 5 C -0.197 4.197 6 C -0.024 4.024 7 C -0.169 4.169 8 C -0.033 4.033 9 C -0.229 4.229 10 C 0.168 3.832 11 O -0.303 6.303 12 C 0.027 3.973 13 C 0.123 3.877 14 H 0.085 0.915 15 O -0.561 6.561 16 C 0.028 3.972 17 N -0.542 5.542 18 C 0.040 3.960 19 C 0.173 3.827 20 C -0.519 4.519 21 H 0.031 0.969 22 C 0.003 3.997 23 N -0.951 5.951 24 Si 0.954 3.046 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.242 1.242 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.055 0.945 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.382 0.618 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.027 0.973 43 H 0.036 0.964 44 H -0.009 1.009 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 -32.874 -2.402 35.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.345 3.655 4 O -0.416 6.416 5 C -0.199 4.199 6 C -0.042 4.042 7 C -0.187 4.187 8 C -0.051 4.051 9 C -0.248 4.248 10 C 0.121 3.879 11 O -0.215 6.215 12 C -0.048 4.048 13 C 0.063 3.937 14 H 0.103 0.897 15 O -0.367 6.367 16 C -0.100 4.100 17 N -0.266 5.266 18 C -0.108 4.108 19 C 0.046 3.954 20 C -0.558 4.558 21 H 0.049 0.951 22 C -0.194 4.194 23 N -0.592 5.592 24 Si 0.777 3.223 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.166 1.166 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.074 0.926 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.172 0.828 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.008 0.992 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.897 -32.474 -2.376 34.336 hybrid contribution 0.696 1.342 -0.352 1.553 sum 11.593 -31.132 -2.728 33.332 Atomic orbital electron populations 1.23515 0.74765 1.05765 1.02131 1.86498 1.24785 1.31747 1.84504 1.21420 0.89756 0.81546 0.72817 1.90941 1.67343 1.36924 1.46405 1.18680 0.88916 0.93306 1.18986 1.21575 0.94569 0.96611 0.91408 1.21480 0.93658 0.99542 1.03978 1.21704 1.01939 0.91006 0.90425 1.21550 0.90719 1.02242 1.10274 1.19446 0.91268 0.85424 0.91798 1.86354 1.35781 1.12832 1.86542 1.23749 0.95152 0.81640 1.04293 1.21780 0.92887 0.90483 0.88584 0.89682 1.86660 1.38150 1.96023 1.15828 1.22736 0.94296 0.90431 1.02542 1.61662 1.23111 1.02702 1.39132 1.22197 0.97310 1.01319 0.90004 1.19971 0.93382 0.86899 0.95139 1.21289 0.94128 0.91861 1.48492 0.95056 1.25948 1.03287 0.95857 0.94307 1.70070 1.36682 1.01193 1.51252 0.85620 0.79238 0.78709 0.78750 1.19300 1.20815 1.16567 0.92523 0.84259 0.92619 0.82362 0.81617 0.81574 0.82783 0.88715 0.88972 0.77015 0.89034 0.92712 0.91550 0.93544 0.95504 0.94561 0.99185 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -7.70 9.82 -56.67 -0.56 -8.26 16 3 C 0.50 13.80 7.89 70.23 0.55 14.35 16 4 O -0.53 -19.02 14.95 26.80 0.40 -18.62 16 5 C -0.20 -4.49 5.89 -20.02 -0.12 -4.61 16 6 C -0.02 -0.34 9.61 22.53 0.22 -0.12 16 7 C -0.17 -1.58 10.02 22.23 0.22 -1.36 16 8 C -0.03 -0.32 10.03 22.30 0.22 -0.09 16 9 C -0.23 -3.44 9.03 22.34 0.20 -3.23 16 10 C 0.17 3.89 6.70 22.86 0.15 4.04 16 11 O -0.30 -8.62 8.17 -64.82 -0.53 -9.15 16 12 C 0.03 0.58 4.37 71.98 0.31 0.90 16 13 C 0.12 3.55 3.12 30.60 0.10 3.65 16 14 H 0.09 2.80 6.55 -2.39 -0.02 2.78 16 15 O -0.56 -19.17 13.17 -144.34 -1.90 -21.07 16 16 C 0.03 0.85 4.62 86.30 0.40 1.25 16 17 N -0.54 -22.72 4.62 -927.04 -4.28 -27.00 16 18 C 0.04 1.63 9.14 127.69 1.17 2.79 16 19 C 0.17 8.22 3.79 85.56 0.32 8.54 16 20 C -0.52 -30.70 9.01 25.60 0.23 -30.47 16 21 H 0.03 2.10 7.37 -2.91 -0.02 2.08 16 22 C 0.00 0.17 5.47 84.66 0.46 0.63 16 23 N -0.95 -60.60 13.96 21.45 0.30 -60.31 16 24 Si 0.95 43.65 27.47 68.60 1.88 45.53 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.16 1.64 7.61 -2.91 -0.02 1.62 16 32 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 35 H 0.09 1.57 7.66 -2.38 -0.02 1.55 16 36 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 37 H 0.38 10.10 9.05 -74.06 -0.67 9.43 16 38 H 0.09 2.42 7.93 -2.39 -0.02 2.41 16 39 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 40 H 0.07 2.47 6.47 -2.39 -0.02 2.45 16 41 H 0.05 2.18 6.76 -2.38 -0.02 2.17 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.04 1.66 6.99 -2.38 -0.02 1.64 16 44 H -0.01 -0.44 7.55 -2.39 -0.02 -0.45 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -84.41 375.17 1.24 -83.16 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.28 Total: 17.73 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.65 Total: -2.03 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -3.98 Total: -87.31 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -2.59 Total: -57.09 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -84.41 1.24 -83.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414161572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.160 kcal (2) G-P(sol) polarization free energy of solvation -84.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds