Wall clock time and date at job start Tue Mar 31 2020 14:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00381 * 269.99655 * 10 9 7 12 12 C 1.53002 * 109.46810 * 90.00065 * 11 10 9 13 13 C 1.53002 * 117.49875 * 243.62335 * 12 11 10 14 14 C 1.52999 * 117.49621 * 175.00094 * 12 11 10 15 15 C 1.34781 * 119.99786 * 90.00095 * 10 9 7 16 16 O 1.21585 * 120.00071 * 0.02562 * 15 10 9 17 17 N 1.34779 * 119.99681 * 179.97438 * 15 10 9 18 18 C 1.46510 * 119.99600 * 179.97438 * 17 15 10 19 19 H 1.08998 * 109.46821 * 35.00281 * 18 17 15 20 20 C 1.52998 * 109.46828 * 155.00054 * 18 17 15 21 21 C 1.53000 * 109.47405 * 295.00255 * 20 18 17 22 22 N 1.46899 * 109.47391 * 180.02562 * 21 20 18 23 23 C 1.52997 * 109.47205 * 275.00226 * 18 17 15 24 24 F 1.39904 * 109.47446 * 60.00000 * 23 18 17 25 25 F 1.39896 * 109.47160 * 180.02562 * 23 18 17 26 26 F 1.39899 * 109.47057 * 299.99864 * 23 18 17 27 27 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 29 29 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 30 30 H 1.08992 * 109.47334 * 209.99920 * 11 10 9 31 31 H 1.08994 * 109.46680 * 330.00544 * 11 10 9 32 32 H 1.09004 * 115.54776 * 29.33368 * 12 11 10 33 33 H 1.09001 * 117.49844 * 0.02562 * 13 12 11 34 34 H 1.09006 * 117.49553 * 145.02358 * 13 12 11 35 35 H 1.09003 * 117.49630 * 214.97900 * 14 12 11 36 36 H 1.08991 * 117.50023 * 0.02562 * 14 12 11 37 37 H 0.96996 * 120.00348 * 0.02562 * 17 15 10 38 38 H 1.09003 * 109.46941 * 55.00333 * 20 18 17 39 39 H 1.09005 * 109.47063 * 175.00143 * 20 18 17 40 40 H 1.09004 * 109.46852 * 300.00426 * 21 20 18 41 41 H 1.09000 * 109.47344 * 59.99500 * 21 20 18 42 42 H 1.00898 * 110.99701 * 56.04475 * 22 21 20 43 43 H 1.00895 * 111.00478 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6789 -4.1696 -1.2682 12 6 3.9411 -3.4260 -1.7098 13 6 3.8716 -2.6291 -3.0141 14 6 4.6620 -3.9380 -2.9585 15 6 2.6408 -4.1249 1.1678 16 8 2.2453 -3.6631 2.2207 17 7 3.5162 -5.1497 1.1678 18 6 3.9926 -5.7061 2.4366 19 1 3.1892 -5.6724 3.1725 20 6 4.4300 -7.1569 2.2250 21 6 3.2156 -8.0050 1.8416 22 7 3.6355 -9.3980 1.6390 23 6 5.1803 -4.8836 2.9403 24 9 4.7804 -3.5569 3.1337 25 9 5.6355 -5.4152 4.1515 26 9 6.2114 -4.9268 1.9957 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 0.8903 29 1 0.6246 -2.5571 -0.8897 30 1 2.9072 -5.2273 -1.1378 31 1 1.9056 -4.0557 -2.0278 32 1 4.5545 -3.0218 -0.9046 33 1 2.9265 -2.6341 -3.5572 34 1 4.4394 -1.7001 -3.0670 35 1 5.7498 -3.8700 -2.9749 36 1 4.2369 -4.8041 -3.4655 37 1 3.8314 -5.5183 0.3278 38 1 5.1703 -7.2003 1.4262 39 1 4.8664 -7.5428 3.1463 40 1 2.4753 -7.9614 2.6405 41 1 2.7791 -7.6190 0.9204 42 1 4.1013 -9.7580 2.4585 43 1 2.8506 -9.9790 1.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416005490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:38 Heat of formation + Delta-G solvation = -156.340444 kcal Electronic energy + Delta-G solvation = -29654.322548 eV Core-core repulsion = 25127.458784 eV Total energy + Delta-G solvation = -4526.863764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.86724 -47.44139 -47.23263 -39.79560 -37.37938 -36.63447 -34.48028 -34.07555 -32.52698 -30.58475 -27.77615 -27.10258 -25.94104 -23.35806 -22.66766 -22.03694 -21.33669 -20.62881 -19.68599 -18.32527 -18.12203 -17.71857 -17.36489 -16.44178 -16.23137 -16.06743 -15.23781 -14.78063 -14.62899 -14.43935 -14.24038 -14.14544 -14.02708 -13.79224 -13.62920 -13.60821 -13.41439 -13.35785 -13.03860 -12.66713 -12.40932 -12.20639 -11.89280 -11.60655 -11.46939 -11.36144 -11.20487 -11.18096 -10.88937 -10.59624 -10.26128 -9.94786 -9.61061 -9.56910 -9.33252 -9.08483 -9.01244 -8.37084 -7.67953 -5.98494 -4.00620 2.76132 3.02312 3.33713 3.40711 3.46355 3.73196 3.80004 4.05171 4.15204 4.31480 4.41754 4.51059 4.56232 4.70010 4.79003 4.94762 5.07670 5.19981 5.24824 5.31031 5.35908 5.37113 5.65193 5.67857 5.76101 5.80342 5.84398 6.02322 6.27205 6.42196 6.49165 6.60569 6.73814 6.75544 7.06707 7.34759 7.52525 7.67772 7.99783 8.29750 8.58336 8.99198 9.24847 9.63677 11.09915 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.004622 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.616327 B = 6056.761962 C = 6665.598114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.263 3.737 10 N -0.604 5.604 11 C 0.148 3.852 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.190 4.190 15 C 0.700 3.300 16 O -0.570 6.570 17 N -0.745 5.745 18 C 0.132 3.868 19 H 0.128 0.872 20 C -0.129 4.129 21 C 0.066 3.934 22 N -0.851 5.851 23 C 0.432 3.568 24 F -0.162 7.162 25 F -0.189 7.189 26 F -0.186 7.186 27 H 0.261 0.739 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.340 0.660 43 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -17.786 -0.316 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.143 3.857 10 N -0.338 5.338 11 C 0.023 3.977 12 C -0.177 4.177 13 C -0.198 4.198 14 C -0.228 4.228 15 C 0.402 3.598 16 O -0.445 6.445 17 N -0.405 5.405 18 C 0.021 3.979 19 H 0.146 0.854 20 C -0.168 4.168 21 C -0.065 4.065 22 N -0.380 5.380 23 C 0.375 3.625 24 F -0.143 7.143 25 F -0.171 7.171 26 F -0.168 7.168 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.238 0.762 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.152 0.848 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.689 -16.946 -0.138 19.045 hybrid contribution 0.350 0.964 0.438 1.115 sum 9.040 -15.982 0.300 18.364 Atomic orbital electron populations 1.69924 1.05915 1.26806 1.51146 1.24882 0.94793 0.98998 0.95382 0.86568 0.79970 0.83449 0.77876 1.20772 1.21225 1.19981 1.21417 0.93366 0.90472 1.49967 0.92410 1.19236 0.86607 0.81567 0.98250 1.47519 1.47347 1.36821 1.02125 1.20939 0.94622 0.94722 0.87430 1.22783 0.99342 1.03551 0.92049 1.22865 1.01732 0.94711 1.00508 1.22974 0.98729 0.98488 1.02584 1.15934 0.79356 0.79301 0.85257 1.90934 1.61263 1.62340 1.30001 1.45292 1.49574 1.38545 1.07101 1.21713 0.93944 0.91854 0.90341 0.85442 1.21866 0.99670 0.90944 1.04274 1.21689 0.95088 0.88545 1.01177 1.58690 1.33251 1.03190 1.42914 1.21402 0.85134 0.80713 0.75234 1.93318 1.90225 1.35982 1.94820 1.93139 1.90506 1.86292 1.47130 1.93147 1.62170 1.96468 1.64977 0.92887 0.93808 0.95013 0.92104 0.90202 0.87827 0.88734 0.89222 0.89357 0.89152 0.76162 0.89176 0.89377 0.94789 0.90174 0.84786 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.32 9.39 -34.44 -0.32 -14.64 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.26 6.68 5.20 -5.19 -0.03 6.66 16 10 N -0.60 -12.26 2.46 -180.80 -0.44 -12.71 16 11 C 0.15 2.28 5.50 -4.04 -0.02 2.26 16 12 C -0.16 -2.44 6.01 -90.62 -0.54 -2.99 16 13 C -0.16 -2.41 10.18 -26.73 -0.27 -2.68 16 14 C -0.19 -2.32 10.25 -26.73 -0.27 -2.59 16 15 C 0.70 14.06 7.81 -86.91 -0.68 13.38 16 16 O -0.57 -13.99 14.50 5.29 0.08 -13.92 16 17 N -0.75 -10.83 4.31 -58.67 -0.25 -11.08 16 18 C 0.13 1.69 2.06 -67.93 -0.14 1.55 16 19 H 0.13 1.74 7.57 -51.93 -0.39 1.34 16 20 C -0.13 -1.16 4.77 -26.73 -0.13 -1.29 16 21 C 0.07 0.55 6.67 -3.82 -0.03 0.52 16 22 N -0.85 -5.96 9.62 -10.37 -0.10 -6.06 16 23 C 0.43 6.41 2.82 37.16 0.10 6.52 16 24 F -0.16 -3.16 15.68 2.25 0.04 -3.12 16 25 F -0.19 -2.56 16.71 2.25 0.04 -2.52 16 26 F -0.19 -2.70 16.81 2.25 0.04 -2.66 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 30 H 0.06 0.74 6.36 -51.93 -0.33 0.41 16 31 H 0.08 1.22 7.63 -51.93 -0.40 0.82 16 32 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.90 6.33 -40.82 -0.26 4.64 16 38 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.09 0.69 7.66 -51.93 -0.40 0.29 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.74 7.75 -51.93 -0.40 0.33 16 42 H 0.34 1.93 8.99 -39.29 -0.35 1.58 16 43 H 0.34 1.98 9.08 -39.29 -0.36 1.62 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -33.16 369.85 -7.92 -41.07 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.17 Total: 5.77 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -2.43 Total: 8.33 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.06 Total: -55.71 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 0.11 Total: -8.31 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.16 -7.92 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416005490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.266 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds