Wall clock time and date at job start Tue Mar 31 2020 14:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00381 * 269.99655 * 10 9 7 12 12 C 1.53002 * 109.46810 * 90.00065 * 11 10 9 13 13 C 1.53002 * 117.49875 * 243.62335 * 12 11 10 14 14 C 1.52999 * 117.49621 * 175.00094 * 12 11 10 15 15 C 1.34781 * 119.99786 * 90.00095 * 10 9 7 16 16 O 1.21585 * 120.00071 * 0.02562 * 15 10 9 17 17 N 1.34779 * 119.99681 * 179.97438 * 15 10 9 18 18 C 1.46510 * 119.99600 * 179.97438 * 17 15 10 19 19 H 1.08998 * 109.46821 * 35.00281 * 18 17 15 20 20 C 1.52998 * 109.46828 * 155.00054 * 18 17 15 21 21 C 1.53000 * 109.47405 * 295.00255 * 20 18 17 22 22 N 1.46899 * 109.47391 * 180.02562 * 21 20 18 23 23 C 1.52997 * 109.47205 * 275.00226 * 18 17 15 24 24 F 1.39904 * 109.47446 * 60.00000 * 23 18 17 25 25 F 1.39896 * 109.47160 * 180.02562 * 23 18 17 26 26 F 1.39899 * 109.47057 * 299.99864 * 23 18 17 27 27 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 29 29 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 30 30 H 1.08992 * 109.47334 * 209.99920 * 11 10 9 31 31 H 1.08994 * 109.46680 * 330.00544 * 11 10 9 32 32 H 1.09004 * 115.54776 * 29.33368 * 12 11 10 33 33 H 1.09001 * 117.49844 * 0.02562 * 13 12 11 34 34 H 1.09006 * 117.49553 * 145.02358 * 13 12 11 35 35 H 1.09003 * 117.49630 * 214.97900 * 14 12 11 36 36 H 1.08991 * 117.50023 * 0.02562 * 14 12 11 37 37 H 0.96996 * 120.00348 * 0.02562 * 17 15 10 38 38 H 1.09003 * 109.46941 * 55.00333 * 20 18 17 39 39 H 1.09005 * 109.47063 * 175.00143 * 20 18 17 40 40 H 1.09004 * 109.46852 * 300.00426 * 21 20 18 41 41 H 1.09000 * 109.47344 * 59.99500 * 21 20 18 42 42 H 1.00898 * 110.99701 * 56.04475 * 22 21 20 43 43 H 1.00895 * 111.00478 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6789 -4.1696 -1.2682 12 6 3.9411 -3.4260 -1.7098 13 6 3.8716 -2.6291 -3.0141 14 6 4.6620 -3.9380 -2.9585 15 6 2.6408 -4.1249 1.1678 16 8 2.2453 -3.6631 2.2207 17 7 3.5162 -5.1497 1.1678 18 6 3.9926 -5.7061 2.4366 19 1 3.1892 -5.6724 3.1725 20 6 4.4300 -7.1569 2.2250 21 6 3.2156 -8.0050 1.8416 22 7 3.6355 -9.3980 1.6390 23 6 5.1803 -4.8836 2.9403 24 9 4.7804 -3.5569 3.1337 25 9 5.6355 -5.4152 4.1515 26 9 6.2114 -4.9268 1.9957 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 0.8903 29 1 0.6246 -2.5571 -0.8897 30 1 2.9072 -5.2273 -1.1378 31 1 1.9056 -4.0557 -2.0278 32 1 4.5545 -3.0218 -0.9046 33 1 2.9265 -2.6341 -3.5572 34 1 4.4394 -1.7001 -3.0670 35 1 5.7498 -3.8700 -2.9749 36 1 4.2369 -4.8041 -3.4655 37 1 3.8314 -5.5183 0.3278 38 1 5.1703 -7.2003 1.4262 39 1 4.8664 -7.5428 3.1463 40 1 2.4753 -7.9614 2.6405 41 1 2.7791 -7.6190 0.9204 42 1 4.1013 -9.7580 2.4585 43 1 2.8506 -9.9790 1.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416005490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:37 Heat of formation + Delta-G solvation = -179.261306 kcal Electronic energy + Delta-G solvation = -29655.316471 eV Core-core repulsion = 25127.458784 eV Total energy + Delta-G solvation = -4527.857687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.09896 -48.61322 -48.57158 -41.29687 -38.56332 -37.75972 -36.04750 -35.20153 -34.50852 -31.78785 -29.51340 -28.08446 -27.51759 -25.08380 -23.82717 -23.11878 -22.35028 -21.96153 -21.09270 -19.54707 -19.37588 -19.01116 -18.78967 -18.49505 -17.54514 -16.78738 -16.61842 -16.31886 -16.00805 -15.80787 -15.49041 -15.39928 -15.02195 -14.95374 -14.88717 -14.80656 -14.72975 -14.63329 -14.48790 -14.30660 -13.72931 -13.59075 -13.24079 -13.07152 -12.82794 -12.68815 -12.54460 -12.47920 -12.25374 -12.22042 -12.16476 -11.61640 -11.29359 -11.08260 -10.72635 -10.56818 -10.43986 -9.60670 -9.39005 -8.17101 -6.27246 1.34236 1.37186 1.44591 1.50327 1.73851 2.26681 2.40891 2.73937 2.83016 2.96348 3.06678 3.13592 3.29251 3.58702 3.87931 3.91074 4.03483 4.06073 4.11793 4.22540 4.37294 4.42183 4.57796 4.63699 4.79935 4.88437 4.90017 5.02016 5.07734 5.13609 5.21582 5.29255 5.35458 5.37556 5.62889 5.81360 6.06561 6.14301 6.21588 6.62740 6.80205 7.08033 7.37519 7.67721 8.89880 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.004622 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.616327 B = 6056.761962 C = 6665.598114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.047 0.953 9 C 0.281 3.719 10 N -0.610 5.610 11 C 0.146 3.854 12 C -0.178 4.178 13 C -0.183 4.183 14 C -0.144 4.144 15 C 0.699 3.301 16 O -0.621 6.621 17 N -0.723 5.723 18 C 0.135 3.865 19 H 0.119 0.881 20 C -0.116 4.116 21 C 0.069 3.931 22 N -0.852 5.852 23 C 0.428 3.572 24 F -0.195 7.195 25 F -0.179 7.179 26 F -0.182 7.182 27 H 0.264 0.736 28 H 0.001 0.999 29 H 0.027 0.973 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.416 0.584 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.349 0.651 43 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -19.810 -1.604 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.065 0.935 9 C 0.159 3.841 10 N -0.343 5.343 11 C 0.023 3.977 12 C -0.198 4.198 13 C -0.220 4.220 14 C -0.181 4.181 15 C 0.400 3.600 16 O -0.501 6.501 17 N -0.383 5.383 18 C 0.025 3.975 19 H 0.137 0.863 20 C -0.154 4.154 21 C -0.062 4.062 22 N -0.383 5.383 23 C 0.372 3.628 24 F -0.176 7.176 25 F -0.161 7.161 26 F -0.164 7.164 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.045 0.955 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.256 0.744 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.162 0.838 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.438 -19.037 -1.471 21.760 hybrid contribution -0.131 1.533 0.864 1.764 sum 10.307 -17.504 -0.606 20.322 Atomic orbital electron populations 1.70025 1.07172 1.27721 1.51980 1.25654 0.95620 1.02288 0.95125 0.85630 0.78278 0.79598 0.78592 1.18971 1.20737 1.20600 1.21604 0.92879 0.91829 1.49552 0.93514 1.18653 0.86932 0.82730 0.95779 1.47330 1.46863 1.35849 1.04254 1.21224 0.94662 0.96622 0.85204 1.22614 0.99751 1.05274 0.92141 1.22917 1.02574 0.95983 1.00535 1.23063 0.99198 0.97428 0.98449 1.16086 0.79687 0.79935 0.84291 1.90896 1.63149 1.64191 1.31846 1.44966 1.47866 1.36742 1.08688 1.21920 0.92880 0.93597 0.89093 0.86323 1.21848 1.00129 0.87898 1.05553 1.21592 0.94548 0.89307 1.00759 1.58660 1.33686 1.02535 1.43428 1.21688 0.85877 0.79524 0.75700 1.93259 1.90635 1.38648 1.95068 1.93153 1.90439 1.85884 1.46629 1.93150 1.62066 1.96343 1.64797 0.92660 0.98114 0.95518 0.88001 0.89831 0.90821 0.88804 0.90419 0.87996 0.86192 0.74408 0.88306 0.87578 0.95025 0.90841 0.83792 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.95 46.27 29.54 68.60 2.03 48.29 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.52 -29.92 9.39 25.60 0.24 -29.68 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.28 14.87 5.20 85.63 0.45 15.32 16 10 N -0.61 -25.16 2.46 -844.19 -2.07 -27.24 16 11 C 0.15 4.31 5.50 86.38 0.47 4.79 16 12 C -0.18 -5.31 6.01 -10.79 -0.06 -5.37 16 13 C -0.18 -5.27 10.18 30.60 0.31 -4.96 16 14 C -0.14 -3.02 10.25 30.60 0.31 -2.71 16 15 C 0.70 28.55 7.81 179.05 1.40 29.95 16 16 O -0.62 -31.82 14.50 -3.98 -0.06 -31.88 16 17 N -0.72 -20.35 4.31 -457.80 -1.97 -22.33 16 18 C 0.14 3.32 2.06 44.99 0.09 3.41 16 19 H 0.12 3.22 7.57 -2.39 -0.02 3.20 16 20 C -0.12 -1.78 4.77 30.59 0.15 -1.63 16 21 C 0.07 0.98 6.67 86.30 0.58 1.55 16 22 N -0.85 -9.41 9.62 -186.72 -1.80 -11.21 16 23 C 0.43 12.44 2.82 71.98 0.20 12.65 16 24 F -0.19 -7.77 15.68 44.97 0.71 -7.06 16 25 F -0.18 -4.65 16.71 44.97 0.75 -3.90 16 26 F -0.18 -5.01 16.81 44.97 0.76 -4.25 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 29 H 0.03 1.43 7.89 -2.39 -0.02 1.41 16 30 H 0.10 2.14 6.36 -2.39 -0.02 2.12 16 31 H 0.08 2.43 7.63 -2.39 -0.02 2.41 16 32 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 34 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.42 9.18 6.33 -92.71 -0.59 8.59 16 38 H 0.10 1.42 7.94 -2.39 -0.02 1.40 16 39 H 0.11 1.32 7.66 -2.38 -0.02 1.31 16 40 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 1.15 7.75 -2.39 -0.02 1.14 16 42 H 0.35 2.89 8.99 -89.70 -0.81 2.09 16 43 H 0.35 3.10 9.08 -89.70 -0.81 2.28 16 Total: -1.00 -75.33 369.85 2.08 -73.25 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -1.14 Total: 17.82 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 4.60 Total: 24.45 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -5.56 Total: -116.72 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.06 Total: -31.88 kcal Atomic # 9 Polarization: -17.42 SS G_CDS: 2.21 Total: -15.21 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.33 2.08 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416005490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.007 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds