Wall clock time and date at job start Tue Mar 31 2020 13:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47045 * 2 1 4 4 C 1.46501 * 119.99712 * 270.00104 * 3 2 1 5 5 C 1.50701 * 109.46761 * 269.99743 * 4 3 2 6 6 H 1.07998 * 120.00419 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99557 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00178 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.46900 * 90.00081 * 9 7 5 11 11 H 1.48500 * 109.46974 * 210.00483 * 9 7 5 12 12 H 1.48501 * 109.46810 * 330.00105 * 9 7 5 13 13 C 1.34769 * 120.00005 * 89.99901 * 3 2 1 14 14 O 1.21581 * 119.99999 * 179.97438 * 13 3 2 15 15 N 1.34780 * 120.00115 * 0.02562 * 13 3 2 16 16 C 1.38999 * 120.00098 * 179.97438 * 15 13 3 17 17 N 1.28927 * 124.93330 * 180.02562 * 16 15 13 18 18 C 1.33736 * 117.62856 * 179.97438 * 17 16 15 19 19 C 1.33651 * 113.25171 * 0.03315 * 18 17 16 20 20 S 1.70730 * 124.93357 * 359.97227 * 16 15 13 21 21 C 1.51756 * 110.90532 * 179.97438 * 19 18 17 22 22 C 1.54304 * 104.79814 * 342.74486 * 21 19 18 23 23 C 1.52633 * 137.04238 * 180.02562 * 18 17 16 24 24 C 1.53005 * 110.31972 * 316.27287 * 23 18 17 25 25 C 1.52996 * 110.32343 * 78.47125 * 23 18 17 26 26 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47366 * 300.00229 * 1 2 3 28 28 H 1.09002 * 109.47373 * 59.99717 * 1 2 3 29 29 H 1.08997 * 109.46986 * 240.00087 * 2 1 3 30 30 H 1.08996 * 109.47045 * 120.00062 * 2 1 3 31 31 H 1.08991 * 109.47557 * 30.00116 * 4 3 2 32 32 H 1.09004 * 109.47009 * 150.00172 * 4 3 2 33 33 H 0.97003 * 119.99519 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00033 * 359.97438 * 15 13 3 35 35 H 1.09005 * 110.36951 * 101.57334 * 21 19 18 36 36 H 1.08996 * 110.37562 * 223.90932 * 21 19 18 37 37 H 1.08992 * 110.97496 * 144.30272 * 22 21 19 38 38 H 1.09000 * 110.97179 * 268.08703 * 22 21 19 39 39 H 1.09002 * 109.47049 * 61.45378 * 24 23 18 40 40 H 1.09007 * 109.47123 * 181.45311 * 24 23 18 41 41 H 1.08998 * 109.47260 * 301.45455 * 24 23 18 42 42 H 1.09003 * 109.47148 * 58.55066 * 25 23 18 43 43 H 1.08999 * 109.47609 * 178.54564 * 25 23 18 44 44 H 1.09000 * 109.47409 * 298.54501 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6172 9 14 5.9135 2.0964 -3.4171 10 1 5.9761 0.8759 -4.2606 11 1 6.3930 3.2640 -4.1993 12 1 6.7736 1.9155 -2.2201 13 6 2.2430 2.0166 1.1671 14 8 2.6487 3.1627 1.1671 15 7 2.0188 1.3811 2.3344 16 6 2.2510 2.0361 3.5381 17 7 2.0698 1.5208 4.7060 18 6 2.3408 2.2847 5.7697 19 6 2.7721 3.5074 5.4452 20 16 2.8186 3.6396 3.6850 21 6 3.0624 4.3270 6.6890 22 6 2.3324 3.5859 7.8286 23 6 2.2924 2.1424 7.2886 24 6 0.9966 1.4502 7.7164 25 6 3.5060 1.3557 7.7876 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5817 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6759 3.5184 -4.4427 34 1 1.6955 0.4665 2.3344 35 1 4.1348 4.3573 6.8817 36 1 2.6672 5.3369 6.5787 37 1 2.9015 3.6402 8.7566 38 1 1.3250 3.9783 7.9668 39 1 0.9598 0.4497 7.2854 40 1 0.9645 1.3790 8.8036 41 1 0.1424 2.0288 7.3648 42 1 4.4199 1.8677 7.4863 43 1 3.4710 1.2845 8.8747 44 1 3.4918 0.3542 7.3574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421119555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:27 Heat of formation + Delta-G solvation = 23.380184 kcal Electronic energy + Delta-G solvation = -25219.409031 eV Core-core repulsion = 21684.948149 eV Total energy + Delta-G solvation = -3534.460882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59483 -39.97091 -37.05252 -35.66612 -34.16846 -32.72715 -31.93013 -30.30245 -28.07022 -27.42234 -26.88122 -24.65104 -23.54701 -23.19915 -22.68273 -20.68585 -20.27048 -18.61191 -17.32659 -17.06453 -16.52342 -16.39068 -15.70213 -15.16770 -14.96689 -14.43506 -14.27110 -14.12021 -13.85762 -13.67863 -13.34138 -13.10798 -12.79383 -12.67008 -12.31725 -12.18919 -12.16526 -11.86808 -11.82002 -11.57090 -11.31313 -11.16571 -11.01560 -10.93753 -10.69586 -10.65790 -10.60600 -10.21444 -10.15464 -9.75067 -9.44968 -9.32387 -8.75242 -8.49821 -8.09744 -7.64746 -6.11156 -4.16286 1.13102 1.39357 2.24444 2.66267 2.88298 3.26917 3.34086 3.38691 3.64775 4.00106 4.28990 4.40076 4.42565 4.73741 4.85946 5.11498 5.15133 5.23534 5.24421 5.36082 5.45173 5.49582 5.51942 5.56915 5.60515 5.71964 5.78121 5.81627 5.87419 5.91561 6.07920 6.10297 6.10935 6.13593 6.21198 6.35878 6.46608 6.59250 7.15776 7.29322 7.42951 7.84730 7.98480 8.12983 8.30393 8.76934 8.92632 9.49065 10.96824 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018946 B = 0.003221 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.494336 B = 8689.787825 C = 9418.655499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.260 3.740 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.697 3.303 14 O -0.551 6.551 15 N -0.643 5.643 16 C 0.283 3.717 17 N -0.523 5.523 18 C 0.078 3.922 19 C -0.326 4.326 20 S 0.271 5.729 21 C -0.029 4.029 22 C -0.110 4.110 23 C 0.019 3.981 24 C -0.135 4.135 25 C -0.135 4.135 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.413 0.587 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 -3.398 20.472 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.397 3.603 14 O -0.428 6.428 15 N -0.298 5.298 16 C -0.087 4.087 17 N -0.246 5.246 18 C -0.054 4.054 19 C -0.448 4.448 20 S 0.523 5.477 21 C -0.069 4.069 22 C -0.149 4.149 23 C 0.016 3.984 24 C -0.193 4.193 25 C -0.192 4.192 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.253 0.747 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.328 -2.266 19.316 19.924 hybrid contribution 0.631 -1.263 0.196 1.425 sum -3.696 -3.529 19.512 20.171 Atomic orbital electron populations 1.22251 0.96255 1.01847 1.02672 1.21483 0.93904 0.83790 1.02957 1.47609 1.66016 1.13496 1.05661 1.19348 0.96570 0.93576 0.76397 1.21423 0.96820 1.32260 1.06469 0.92371 1.24916 0.97938 0.94770 0.96295 1.69927 1.35751 1.33147 1.14356 0.86481 0.84526 0.77722 0.78627 1.20614 1.21011 1.19866 1.15875 0.79683 0.84838 0.79884 1.90821 1.51808 1.16381 1.83778 1.42270 1.68527 1.17669 1.01383 1.22697 1.01429 0.96216 0.88372 1.65287 1.25716 1.37688 0.95905 1.20815 1.00852 0.89416 0.94294 1.27649 1.13476 1.02425 1.01220 1.85171 1.61056 1.08254 0.93221 1.20486 1.00498 0.97581 0.88364 1.22484 1.01295 0.93374 0.97743 1.19918 0.96652 0.95894 0.85956 1.21804 0.95951 1.01044 1.00491 1.21802 0.96727 1.00248 1.00473 0.91746 0.93037 0.91587 0.88937 0.92180 0.94339 0.93435 0.92599 0.74718 0.90475 0.90883 0.89906 0.90505 0.92021 0.92435 0.92614 0.92407 0.92019 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.57 5.89 -4.04 -0.02 1.54 16 3 N -0.59 -12.09 2.46 -180.81 -0.44 -12.54 16 4 C 0.26 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.81 -0.10 1.67 16 8 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.70 14.49 8.24 -86.92 -0.72 13.77 16 14 O -0.55 -13.28 13.38 5.29 0.07 -13.21 16 15 N -0.64 -11.17 5.27 -17.68 -0.09 -11.26 16 16 C 0.28 5.01 8.17 -87.91 -0.72 4.29 16 17 N -0.52 -8.76 10.59 -10.45 -0.11 -8.87 16 18 C 0.08 1.14 6.35 -82.41 -0.52 0.62 16 19 C -0.33 -4.72 7.41 -35.39 -0.26 -4.98 16 20 S 0.27 4.69 20.21 -107.50 -2.17 2.51 16 21 C -0.03 -0.31 6.79 -26.68 -0.18 -0.49 16 22 C -0.11 -0.96 6.14 -25.44 -0.16 -1.11 16 23 C 0.02 0.20 0.89 -154.08 -0.14 0.06 16 24 C -0.14 -1.33 8.51 37.16 0.32 -1.01 16 25 C -0.13 -1.30 8.48 37.16 0.32 -0.99 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 30 H 0.06 0.78 6.36 -51.93 -0.33 0.44 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.41 6.05 6.55 -40.82 -0.27 5.78 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.54 7.90 -51.93 -0.41 0.13 16 38 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -31.96 371.14 -10.43 -42.39 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.84 Total: 0.90 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.15 Total: 3.10 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.09 Total: -57.76 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -2.17 Total: 2.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.96 -10.43 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421119555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.772 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds