Wall clock time and date at job start Tue Mar 31 2020 13:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47045 * 2 1 4 4 C 1.46501 * 119.99712 * 270.00104 * 3 2 1 5 5 C 1.50701 * 109.46761 * 269.99743 * 4 3 2 6 6 H 1.07998 * 120.00419 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99557 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00178 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.46900 * 90.00081 * 9 7 5 11 11 H 1.48500 * 109.46974 * 210.00483 * 9 7 5 12 12 H 1.48501 * 109.46810 * 330.00105 * 9 7 5 13 13 C 1.34769 * 120.00005 * 89.99901 * 3 2 1 14 14 O 1.21581 * 119.99999 * 179.97438 * 13 3 2 15 15 N 1.34780 * 120.00115 * 0.02562 * 13 3 2 16 16 C 1.38999 * 120.00098 * 179.97438 * 15 13 3 17 17 N 1.28927 * 124.93330 * 180.02562 * 16 15 13 18 18 C 1.33736 * 117.62856 * 179.97438 * 17 16 15 19 19 C 1.33651 * 113.25171 * 0.03315 * 18 17 16 20 20 S 1.70730 * 124.93357 * 359.97227 * 16 15 13 21 21 C 1.51756 * 110.90532 * 179.97438 * 19 18 17 22 22 C 1.54304 * 104.79814 * 342.74486 * 21 19 18 23 23 C 1.52633 * 137.04238 * 180.02562 * 18 17 16 24 24 C 1.53005 * 110.31972 * 316.27287 * 23 18 17 25 25 C 1.52996 * 110.32343 * 78.47125 * 23 18 17 26 26 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47366 * 300.00229 * 1 2 3 28 28 H 1.09002 * 109.47373 * 59.99717 * 1 2 3 29 29 H 1.08997 * 109.46986 * 240.00087 * 2 1 3 30 30 H 1.08996 * 109.47045 * 120.00062 * 2 1 3 31 31 H 1.08991 * 109.47557 * 30.00116 * 4 3 2 32 32 H 1.09004 * 109.47009 * 150.00172 * 4 3 2 33 33 H 0.97003 * 119.99519 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00033 * 359.97438 * 15 13 3 35 35 H 1.09005 * 110.36951 * 101.57334 * 21 19 18 36 36 H 1.08996 * 110.37562 * 223.90932 * 21 19 18 37 37 H 1.08992 * 110.97496 * 144.30272 * 22 21 19 38 38 H 1.09000 * 110.97179 * 268.08703 * 22 21 19 39 39 H 1.09002 * 109.47049 * 61.45378 * 24 23 18 40 40 H 1.09007 * 109.47123 * 181.45311 * 24 23 18 41 41 H 1.08998 * 109.47260 * 301.45455 * 24 23 18 42 42 H 1.09003 * 109.47148 * 58.55066 * 25 23 18 43 43 H 1.08999 * 109.47609 * 178.54564 * 25 23 18 44 44 H 1.09000 * 109.47409 * 298.54501 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6172 9 14 5.9135 2.0964 -3.4171 10 1 5.9761 0.8759 -4.2606 11 1 6.3930 3.2640 -4.1993 12 1 6.7736 1.9155 -2.2201 13 6 2.2430 2.0166 1.1671 14 8 2.6487 3.1627 1.1671 15 7 2.0188 1.3811 2.3344 16 6 2.2510 2.0361 3.5381 17 7 2.0698 1.5208 4.7060 18 6 2.3408 2.2847 5.7697 19 6 2.7721 3.5074 5.4452 20 16 2.8186 3.6396 3.6850 21 6 3.0624 4.3270 6.6890 22 6 2.3324 3.5859 7.8286 23 6 2.2924 2.1424 7.2886 24 6 0.9966 1.4502 7.7164 25 6 3.5060 1.3557 7.7876 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5817 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6759 3.5184 -4.4427 34 1 1.6955 0.4665 2.3344 35 1 4.1348 4.3573 6.8817 36 1 2.6672 5.3369 6.5787 37 1 2.9015 3.6402 8.7566 38 1 1.3250 3.9783 7.9668 39 1 0.9598 0.4497 7.2854 40 1 0.9645 1.3790 8.8036 41 1 0.1424 2.0288 7.3648 42 1 4.4199 1.8677 7.4863 43 1 3.4710 1.2845 8.8747 44 1 3.4918 0.3542 7.3574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421119555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:26 Heat of formation + Delta-G solvation = 5.157800 kcal Electronic energy + Delta-G solvation = -25220.199212 eV Core-core repulsion = 21684.948149 eV Total energy + Delta-G solvation = -3535.251064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90739 -41.31057 -38.22735 -37.24560 -35.67249 -34.69082 -32.81784 -31.75055 -29.57998 -28.37705 -28.14778 -25.89810 -24.99650 -24.51831 -24.04692 -22.02290 -21.49242 -19.92463 -18.71693 -18.60779 -18.33807 -17.70208 -17.03696 -16.75697 -16.27087 -15.97989 -15.57710 -15.25609 -15.04717 -14.83204 -14.67949 -14.35246 -14.02455 -13.76757 -13.60653 -13.35712 -13.21503 -13.11598 -13.06791 -12.80563 -12.74259 -12.55847 -12.32109 -12.25462 -12.14826 -12.06056 -11.78507 -11.74273 -11.45634 -11.34186 -10.96490 -10.64342 -10.63156 -10.09126 -9.72462 -8.99418 -8.23538 -6.37687 -0.15458 0.10728 0.98106 1.21769 1.36973 1.39684 1.49899 1.58475 2.11664 2.36965 2.66139 3.06813 3.14371 3.55615 3.93764 3.98675 4.02870 4.26940 4.33123 4.40424 4.43427 4.58337 4.60555 4.68970 4.76512 4.83446 4.87051 4.93919 4.95042 4.96977 5.04120 5.06510 5.15694 5.20306 5.24591 5.28962 5.35071 5.37085 5.46307 5.47890 5.62267 5.81401 6.02332 6.59697 6.69461 6.83711 7.19601 7.35597 8.83342 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018946 B = 0.003221 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.494336 B = 8689.787825 C = 9418.655499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.599 5.599 4 C 0.278 3.722 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.695 3.305 14 O -0.592 6.592 15 N -0.629 5.629 16 C 0.262 3.738 17 N -0.522 5.522 18 C 0.056 3.944 19 C -0.312 4.312 20 S 0.213 5.787 21 C -0.033 4.033 22 C -0.099 4.099 23 C 0.017 3.983 24 C -0.132 4.132 25 C -0.132 4.132 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.426 0.574 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -4.544 23.327 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.158 3.842 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.789 3.211 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.395 3.605 14 O -0.472 6.472 15 N -0.285 5.285 16 C -0.107 4.107 17 N -0.245 5.245 18 C -0.074 4.074 19 C -0.434 4.434 20 S 0.465 5.535 21 C -0.073 4.073 22 C -0.138 4.138 23 C 0.014 3.986 24 C -0.189 4.189 25 C -0.190 4.190 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.974 -3.476 22.212 22.831 hybrid contribution 0.480 -0.901 -0.560 1.165 sum -3.493 -4.377 21.652 22.364 Atomic orbital electron populations 1.22174 0.94144 1.03893 1.01829 1.21808 0.95608 0.81024 1.04178 1.47476 1.66276 1.15227 1.04212 1.18788 0.95541 0.91669 0.78252 1.21680 0.97833 1.32232 1.06628 0.93002 1.25766 1.02102 0.94408 0.96365 1.70035 1.37649 1.33914 1.14809 0.85460 0.79264 0.78218 0.78134 1.18856 1.20591 1.20094 1.15930 0.79423 0.84460 0.80668 1.90802 1.53384 1.18211 1.84758 1.41851 1.68253 1.17898 1.00480 1.22777 1.03047 0.96254 0.88641 1.65327 1.24971 1.38069 0.96095 1.21715 1.00515 0.89256 0.95923 1.28065 1.12050 1.03288 0.99959 1.85277 1.62006 1.09419 0.96806 1.20759 1.01869 0.97874 0.86808 1.22555 1.02186 0.91034 0.98018 1.20187 0.97695 0.97825 0.82916 1.21782 0.95035 0.99828 1.02292 1.21804 0.95837 0.98989 1.02332 0.88157 0.93084 0.93212 0.89179 0.89446 0.94726 0.97576 0.92312 0.73261 0.89006 0.89682 0.86550 0.89588 0.93526 0.89442 0.93398 0.92860 0.88879 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.10 2.89 5.89 86.38 0.51 3.40 16 3 N -0.60 -25.18 2.46 -844.21 -2.07 -27.25 16 4 C 0.28 14.56 5.16 85.63 0.44 15.00 16 5 C -0.55 -30.80 9.39 25.60 0.24 -30.56 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.74 5.46 84.66 0.46 1.21 16 8 N -0.92 -54.76 13.29 21.45 0.28 -54.47 16 9 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.69 30.09 8.24 179.06 1.48 31.57 16 14 O -0.59 -30.25 13.38 -3.97 -0.05 -30.31 16 15 N -0.63 -22.29 5.27 -328.11 -1.73 -24.02 16 16 C 0.26 9.50 8.17 179.40 1.47 10.97 16 17 N -0.52 -17.42 10.59 -186.98 -1.98 -19.39 16 18 C 0.06 1.59 6.35 41.85 0.27 1.86 16 19 C -0.31 -8.79 7.41 24.98 0.19 -8.60 16 20 S 0.21 7.67 20.21 -56.49 -1.14 6.53 16 21 C -0.03 -0.61 6.79 30.63 0.21 -0.40 16 22 C -0.10 -1.33 6.14 31.43 0.19 -1.13 16 23 C 0.02 0.31 0.89 -51.91 -0.05 0.26 16 24 C -0.13 -2.23 8.51 71.98 0.61 -1.62 16 25 C -0.13 -2.15 8.48 71.98 0.61 -1.54 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 30 H 0.09 2.14 6.36 -2.39 -0.02 2.13 16 31 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 32 H 0.01 0.37 7.42 -2.38 -0.02 0.35 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.43 12.35 6.55 -92.71 -0.61 11.74 16 35 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 0.86 7.90 -2.39 -0.02 0.84 16 38 H 0.09 1.04 7.91 -2.39 -0.02 1.02 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 42 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -72.82 371.14 3.09 -69.73 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.40 Total: 15.50 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 7.36 Total: 17.15 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.50 Total: -125.14 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -1.14 Total: 6.53 kcal Total: -72.82 3.09 -69.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421119555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.888 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds