Wall clock time and date at job start Tue Mar 31 2020 13:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47771 * 2 1 4 4 C 1.46504 * 119.99608 * 278.14222 * 3 2 1 5 5 C 1.50693 * 109.47074 * 269.99654 * 4 3 2 6 6 H 1.08000 * 119.99877 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99787 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99690 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47188 * 89.99930 * 9 7 5 11 11 H 1.48506 * 109.47021 * 209.99976 * 9 7 5 12 12 H 1.48497 * 109.47468 * 329.99943 * 9 7 5 13 13 C 1.34773 * 120.00126 * 98.13482 * 3 2 1 14 14 O 1.21280 * 119.99800 * 185.97004 * 13 3 2 15 15 C 1.50701 * 119.99759 * 5.97654 * 13 3 2 16 16 C 1.50696 * 112.90590 * 284.19167 * 15 13 3 17 17 C 1.38420 * 120.02893 * 346.62647 * 16 15 13 18 18 F 1.35103 * 120.00751 * 359.97438 * 17 16 15 19 19 C 1.38477 * 119.97606 * 179.78580 * 17 16 15 20 20 C 1.38198 * 120.02228 * 0.48929 * 19 17 16 21 21 C 1.38210 * 120.05482 * 359.74244 * 20 19 17 22 22 C 1.38422 * 120.02356 * 166.89610 * 16 15 13 23 23 F 1.35093 * 120.01427 * 0.02562 * 22 16 15 24 24 C 1.53787 * 113.61232 * 152.94508 * 15 13 3 25 25 C 1.53774 * 87.08264 * 270.88085 * 24 15 13 26 26 C 1.53781 * 113.61718 * 55.44958 * 15 13 3 27 27 H 1.09002 * 109.46584 * 52.62652 * 1 2 3 28 28 H 1.08994 * 109.47487 * 172.62502 * 1 2 3 29 29 H 1.08995 * 109.47300 * 292.63109 * 1 2 3 30 30 H 1.09008 * 109.47489 * 239.99388 * 2 1 3 31 31 H 1.09005 * 109.47014 * 120.00372 * 2 1 3 32 32 H 1.08996 * 109.47405 * 30.00045 * 4 3 2 33 33 H 1.09002 * 109.46790 * 149.99259 * 4 3 2 34 34 H 0.96998 * 120.00437 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.98357 * 180.22417 * 19 17 16 36 36 H 1.08000 * 119.97265 * 179.71998 * 20 19 17 37 37 H 1.08000 * 119.98807 * 180.02562 * 21 20 19 38 38 H 1.09000 * 113.61212 * 25.43528 * 24 15 13 39 39 H 1.09007 * 113.61120 * 156.32948 * 24 15 13 40 40 H 1.08994 * 113.61754 * 220.02050 * 25 24 15 41 41 H 1.09002 * 113.61311 * 89.11493 * 25 24 15 42 42 H 1.09003 * 113.61019 * 203.66277 * 26 15 13 43 43 H 1.08999 * 113.61425 * 334.56422 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.0933 2.1316 -1.2560 5 6 3.4449 1.9200 -1.8878 6 1 4.1753 1.2899 -1.4022 7 6 3.7494 2.5317 -3.0854 8 7 2.8606 3.3001 -3.6761 9 14 5.4252 2.2699 -3.8683 10 1 5.3719 1.0905 -4.7691 11 1 5.7991 3.4748 -4.6517 12 1 6.4366 2.0364 -2.8064 13 6 2.3989 1.9614 1.1554 14 8 2.7001 3.1361 1.1736 15 6 2.4501 1.1505 2.4246 16 6 1.0856 0.8841 3.0060 17 6 -0.0131 1.5891 2.5456 18 9 0.1375 2.5168 1.5751 19 6 -1.2673 1.3402 3.0775 20 6 -1.4205 0.3957 4.0746 21 6 -0.3234 -0.3054 4.5384 22 6 0.9308 -0.0618 4.0046 23 9 2.0032 -0.7463 4.4591 24 6 3.4652 1.6784 3.4523 25 6 4.5065 0.7754 2.7704 26 6 3.3304 -0.1059 2.3179 27 1 -0.3632 0.6238 -0.8167 28 1 -0.3634 -1.0191 -0.1319 29 1 -0.3633 0.3954 0.9485 30 1 1.8934 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3159 1.7817 -1.9352 33 1 1.9486 3.1930 -1.0542 34 1 3.0746 3.7301 -4.5187 35 1 -2.1252 1.8876 2.7159 36 1 -2.3983 0.2055 4.4920 37 1 -0.4445 -1.0437 5.3174 38 1 3.6764 2.7429 3.3502 39 1 3.2395 1.3871 4.4782 40 1 5.1796 0.2798 3.4699 41 1 5.0316 1.2593 1.9469 42 1 3.0679 -0.8850 3.0336 43 1 3.4329 -0.4820 1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421751500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:28 Heat of formation + Delta-G solvation = -71.324261 kcal Electronic energy + Delta-G solvation = -29752.126880 eV Core-core repulsion = 25627.426167 eV Total energy + Delta-G solvation = -4124.700712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.20676 -50.13447 -41.98808 -39.62590 -38.39133 -37.03998 -34.90639 -32.46575 -31.73176 -31.18379 -29.55255 -27.19205 -26.92737 -25.07915 -24.49216 -23.71425 -23.18698 -21.54322 -19.71778 -19.04546 -18.64355 -18.10722 -17.86688 -17.52141 -17.20797 -16.86444 -16.60237 -16.47617 -16.44481 -16.15672 -15.47829 -15.27327 -15.21097 -14.63663 -14.40137 -14.20296 -14.02426 -13.61272 -13.52177 -13.30382 -13.13873 -13.11211 -12.99060 -12.89002 -12.78800 -12.69034 -12.49716 -12.18311 -12.03322 -11.77703 -11.71328 -11.42911 -11.40530 -10.67470 -10.50973 -9.81956 -9.69638 -9.44606 -8.25051 -6.40991 -0.05112 -0.02650 1.32701 1.36363 1.46678 1.76672 2.21350 2.36034 2.39243 2.86986 3.03608 3.27961 3.36119 3.45676 3.47357 3.56735 3.76507 3.87520 3.95938 4.08256 4.23610 4.30622 4.34307 4.52670 4.63558 4.70379 4.78703 4.83315 4.85222 4.89000 4.90236 4.97375 4.97834 4.98793 5.07476 5.11865 5.18053 5.22061 5.29389 5.36807 5.54614 5.78737 5.83847 6.03362 6.66140 6.76911 7.24410 7.45222 8.82306 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.004886 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.647294 B = 5729.636786 C = 6415.612464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.592 5.592 4 C 0.268 3.732 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.536 3.464 14 O -0.596 6.596 15 C -0.071 4.071 16 C -0.148 4.148 17 C 0.101 3.899 18 F -0.146 7.146 19 C -0.163 4.163 20 C -0.045 4.045 21 C -0.145 4.145 22 C 0.131 3.869 23 F -0.119 7.119 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.141 4.141 27 H 0.035 0.965 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.017 0.983 33 H -0.009 1.009 34 H 0.267 0.733 35 H 0.155 0.845 36 H 0.189 0.811 37 H 0.182 0.818 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.050 0.950 42 H 0.144 0.856 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -14.139 19.983 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.035 4.035 3 N -0.321 5.321 4 C 0.147 3.853 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.325 3.675 14 O -0.477 6.477 15 C -0.074 4.074 16 C -0.151 4.151 17 C 0.082 3.918 18 F -0.125 7.125 19 C -0.182 4.182 20 C -0.063 4.063 21 C -0.163 4.163 22 C 0.112 3.888 23 F -0.098 7.098 24 C -0.148 4.148 25 C -0.172 4.172 26 C -0.178 4.178 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.035 0.965 33 H 0.010 0.990 34 H 0.076 0.924 35 H 0.172 0.828 36 H 0.206 0.794 37 H 0.199 0.801 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.125 0.875 41 H 0.069 0.931 42 H 0.161 0.839 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.846 -13.422 19.771 25.481 hybrid contribution 1.111 1.052 -1.529 2.163 sum -7.736 -12.370 18.242 23.359 Atomic orbital electron populations 1.22354 0.95171 1.03183 1.01913 1.22020 0.95388 0.82158 1.03936 1.47978 1.62383 1.14647 1.07126 1.18614 0.95898 0.90458 0.80317 1.21679 1.00295 1.29978 1.06243 0.92904 1.25895 1.01508 0.94273 0.97430 1.70067 1.36684 1.31854 1.18207 0.85382 0.78699 0.78242 0.78287 1.18558 1.20491 1.19719 1.20058 0.75786 0.86759 0.84895 1.90590 1.52066 1.18625 1.86457 1.20783 0.93035 0.99690 0.93896 1.19497 0.93526 1.00902 1.01140 1.17788 0.95314 0.89643 0.89069 1.91585 1.95947 1.63997 1.60960 1.21542 0.94830 1.02003 0.99784 1.21341 1.00724 0.91491 0.92722 1.21611 0.89269 1.02902 1.02514 1.17148 0.84999 0.92230 0.94447 1.91348 1.53972 1.77450 1.87004 1.22913 0.94004 0.99907 0.97939 1.22731 0.96712 0.97485 1.00239 1.23781 0.94118 0.95829 1.04045 0.94585 0.88688 0.92018 0.91130 0.87601 0.96508 0.99041 0.92364 0.82752 0.79403 0.80065 0.92784 0.86617 0.87499 0.93145 0.83862 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 9.68 71.98 0.70 -4.50 16 2 C 0.09 3.14 5.01 86.38 0.43 3.58 16 3 N -0.59 -28.00 2.06 -826.15 -1.70 -29.70 16 4 C 0.27 15.74 5.22 85.63 0.45 16.18 16 5 C -0.54 -33.06 9.39 25.60 0.24 -32.82 16 6 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.47 5.46 84.66 0.46 0.93 16 8 N -0.93 -58.55 13.29 21.45 0.28 -58.26 16 9 Si 0.97 46.53 29.54 68.60 2.03 48.55 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.54 25.23 3.60 87.66 0.32 25.55 16 14 O -0.60 -34.48 15.35 -3.03 -0.05 -34.52 16 15 C -0.07 -2.41 0.62 -53.15 -0.03 -2.45 16 16 C -0.15 -4.12 4.20 -19.78 -0.08 -4.20 16 17 C 0.10 2.99 4.24 22.37 0.09 3.09 16 18 F -0.15 -6.04 12.91 44.97 0.58 -5.46 16 19 C -0.16 -3.14 9.63 22.32 0.21 -2.92 16 20 C -0.05 -0.50 10.04 22.25 0.22 -0.27 16 21 C -0.14 -1.70 10.02 22.32 0.22 -1.48 16 22 C 0.13 2.54 6.76 22.37 0.15 2.69 16 23 F -0.12 -2.17 12.98 44.97 0.58 -1.58 16 24 C -0.11 -3.46 6.87 31.12 0.21 -3.24 16 25 C -0.13 -3.97 7.80 31.12 0.24 -3.73 16 26 C -0.14 -3.97 5.41 31.12 0.17 -3.80 16 27 H 0.03 1.28 7.86 -2.39 -0.02 1.27 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 1.80 3.54 -2.39 -0.01 1.79 16 30 H 0.07 2.61 8.13 -2.38 -0.02 2.59 16 31 H 0.11 3.22 3.74 -2.38 -0.01 3.21 16 32 H 0.02 1.01 7.79 -2.39 -0.02 0.99 16 33 H -0.01 -0.58 7.35 -2.39 -0.02 -0.60 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.05 2.03 7.41 -2.39 -0.02 2.02 16 39 H 0.12 2.84 7.24 -2.38 -0.02 2.83 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.14 3.10 4.94 -2.39 -0.01 3.09 16 43 H 0.07 2.22 6.00 -2.39 -0.01 2.21 16 Total: -1.00 -83.14 340.10 6.79 -76.35 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.05 Total: 12.03 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.01 Total: -7.41 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.41 Total: -87.96 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.05 Total: -34.52 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.16 Total: -7.05 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -83.14 6.79 -76.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421751500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.025 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds