Wall clock time and date at job start Tue Mar 31 2020 13:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42906 * 109.46757 * 2 1 4 4 C 1.35806 * 116.99420 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.92541 * 0.02562 * 4 3 2 6 6 C 1.37770 * 120.15312 * 179.97438 * 5 4 3 7 7 C 1.39779 * 120.00086 * 359.97438 * 6 5 4 8 8 C 1.47493 * 120.07839 * 179.97438 * 7 6 5 9 9 O 1.21623 * 120.00040 * 143.97856 * 8 7 6 10 10 N 1.34780 * 119.99957 * 323.98177 * 8 7 6 11 11 C 1.36905 * 119.99988 * 4.66618 * 10 8 7 12 12 H 1.08001 * 119.99579 * 317.00265 * 11 10 8 13 13 C 1.39016 * 119.99806 * 137.00338 * 11 10 8 14 14 N 1.31380 * 119.99896 * 343.48244 * 13 11 10 15 15 Si 1.86794 * 119.99943 * 163.49170 * 13 11 10 16 16 H 1.48503 * 109.47516 * 89.99798 * 15 13 11 17 17 H 1.48507 * 109.47007 * 209.99663 * 15 13 11 18 18 H 1.48500 * 109.47349 * 329.99602 * 15 13 11 19 19 C 1.46502 * 119.99852 * 184.67119 * 10 8 7 20 20 C 1.52998 * 109.47075 * 84.89844 * 19 10 8 21 21 O 1.42899 * 109.47015 * 65.00345 * 20 19 10 22 22 C 1.42902 * 114.00164 * 179.97438 * 21 20 19 23 23 C 1.39794 * 119.83980 * 359.72475 * 7 6 5 24 24 C 1.38125 * 119.84975 * 0.52846 * 23 7 6 25 25 O 1.36002 * 119.99888 * 179.76920 * 24 23 7 26 26 C 1.42897 * 117.00064 * 359.72669 * 25 24 23 27 27 H 1.09001 * 109.47037 * 300.00141 * 1 2 3 28 28 H 1.09004 * 109.46877 * 60.00354 * 1 2 3 29 29 H 1.08999 * 109.46959 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47037 * 239.99859 * 2 1 3 31 31 H 1.08999 * 109.47164 * 119.99282 * 2 1 3 32 32 H 1.07994 * 119.91967 * 0.02562 * 5 4 3 33 33 H 1.07999 * 120.00168 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00217 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46700 * 204.90164 * 19 10 8 36 36 H 1.08996 * 109.46777 * 324.89924 * 19 10 8 37 37 H 1.09001 * 109.46628 * 184.99410 * 20 19 10 38 38 H 1.08996 * 109.47216 * 304.99926 * 20 19 10 39 39 H 1.09006 * 109.46914 * 59.99260 * 22 21 20 40 40 H 1.08993 * 109.47536 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46911 * 299.99910 * 22 21 20 42 42 H 1.08008 * 120.07226 * 180.27844 * 23 7 6 43 43 H 1.08999 * 109.46941 * 179.97438 * 26 25 24 44 44 H 1.09003 * 109.47616 * 59.99600 * 26 25 24 45 45 H 1.09006 * 109.47138 * 299.99686 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3527 1.5253 0.0005 5 6 4.1970 0.4230 0.0005 6 6 5.5635 0.5980 0.0005 7 6 6.1030 1.8875 0.0000 8 6 7.5657 2.0769 0.0006 9 8 8.0597 2.9994 -0.6191 10 7 8.3549 1.2275 0.6879 11 6 7.8093 0.1347 1.3063 12 1 6.8841 0.2308 1.8550 13 6 8.4463 -1.0984 1.2279 14 7 9.3713 -1.3033 0.3177 15 14 7.9868 -2.4642 2.4165 16 1 6.8859 -3.2751 1.8371 17 1 9.1684 -3.3319 2.6542 18 1 7.5410 -1.8717 3.7031 19 6 9.7966 1.4738 0.7732 20 6 10.0815 2.4411 1.9238 21 8 9.7295 1.8237 3.1635 22 6 9.9583 2.6472 4.3087 23 6 5.2528 2.9972 -0.0063 24 6 3.8837 2.8143 -0.0010 25 8 3.0538 3.8918 -0.0024 26 6 3.6666 5.1827 -0.0034 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7815 -0.5738 -0.0003 33 1 6.2180 -0.2611 0.0001 34 1 9.8156 -2.1638 0.2627 35 1 10.3159 0.5324 0.9528 36 1 10.1468 1.9091 -0.1627 37 1 11.1418 2.6937 1.9320 38 1 9.4928 3.3486 1.7898 39 1 9.3673 3.5593 4.2243 40 1 9.6657 2.1071 5.2090 41 1 11.0162 2.9038 4.3661 42 1 5.6656 3.9952 -0.0113 43 1 2.8940 5.9516 -0.0050 44 1 4.2871 5.2898 -0.8932 45 1 4.2862 5.2915 0.8868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457179552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:04 Heat of formation + Delta-G solvation = -134.337142 kcal Electronic energy + Delta-G solvation = -28436.403162 eV Core-core repulsion = 24420.057522 eV Total energy + Delta-G solvation = -4016.345640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66890 -40.49740 -39.48794 -38.62955 -37.40535 -36.66223 -33.54614 -32.87365 -31.50017 -31.34161 -30.03006 -28.12574 -27.27718 -26.70865 -25.07872 -24.25697 -23.26797 -22.28072 -21.14151 -19.90643 -18.95403 -18.34188 -17.49551 -17.40965 -17.20504 -17.09970 -16.75240 -16.38135 -16.17445 -16.05809 -15.78911 -15.62034 -15.19248 -15.09270 -14.75047 -14.11221 -14.00564 -13.78525 -13.47532 -13.35256 -13.22122 -13.01103 -12.91017 -12.85750 -12.68264 -12.56600 -12.48134 -12.32358 -12.08387 -11.95423 -11.88903 -11.77792 -11.54846 -10.99451 -10.56067 -10.41824 -9.74632 -9.37372 -8.77165 -8.25590 -5.99788 0.07471 0.43448 1.44671 1.51204 1.62030 2.02695 2.22469 2.31861 2.37401 2.77396 2.91719 2.99698 3.24398 3.84219 4.02920 4.07765 4.12321 4.23402 4.24405 4.29540 4.37289 4.38249 4.44136 4.47303 4.48868 4.51760 4.57562 4.59880 4.66072 4.70724 4.75959 4.83840 4.90100 5.00106 5.15443 5.26708 5.29920 5.38858 5.51891 5.61915 5.70729 6.01942 6.11121 6.38800 6.44767 6.60481 7.14688 7.54535 7.97869 8.78838 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.004756 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.599217 B = 5885.610845 C = 7373.649538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 O -0.318 6.318 4 C 0.112 3.888 5 C -0.183 4.183 6 C -0.065 4.065 7 C -0.122 4.122 8 C 0.499 3.501 9 O -0.636 6.636 10 N -0.427 5.427 11 C -0.326 4.326 12 H 0.088 0.912 13 C 0.013 3.987 14 N -0.893 5.893 15 Si 0.971 3.029 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.268 1.268 19 C 0.118 3.882 20 C 0.063 3.937 21 O -0.397 6.397 22 C 0.025 3.975 23 C -0.133 4.133 24 C 0.073 3.927 25 O -0.321 6.321 26 C 0.020 3.980 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.272 0.728 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.054 0.946 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 2.785 3.807 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 O -0.233 6.233 4 C 0.065 3.935 5 C -0.201 4.201 6 C -0.084 4.084 7 C -0.125 4.125 8 C 0.290 3.710 9 O -0.526 6.526 10 N -0.142 5.142 11 C -0.454 4.454 12 H 0.106 0.894 13 C -0.190 4.190 14 N -0.530 5.530 15 Si 0.795 3.205 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.006 4.006 20 C -0.014 4.014 21 O -0.316 6.316 22 C -0.071 4.071 23 C -0.153 4.153 24 C 0.028 3.972 25 O -0.236 6.236 26 C -0.075 4.075 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.073 0.927 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.972 3.010 3.482 11.898 hybrid contribution 0.906 -0.278 0.387 1.023 sum -10.066 2.732 3.869 11.125 Atomic orbital electron populations 1.21780 0.91035 1.04180 1.03165 1.23167 0.97226 0.80805 1.02449 1.86080 1.17406 1.31213 1.88587 1.18461 0.83570 0.91001 1.00435 1.21260 0.92835 0.98427 1.07614 1.21744 0.94898 0.97391 0.94322 1.19623 0.92745 0.94324 1.05814 1.18750 0.87705 0.84287 0.80211 1.90558 1.76836 1.37000 1.48195 1.43334 1.05739 1.22019 1.43122 1.19412 1.10019 0.85828 1.30179 0.89449 1.26032 0.96349 0.99938 0.96710 1.69983 1.26401 1.25225 1.31410 0.85273 0.78103 0.77946 0.79215 1.18781 1.20908 1.19265 1.21357 0.83892 1.00022 0.95321 1.22828 0.98768 0.95038 0.84789 1.88061 1.86873 1.42053 1.14573 1.22888 1.00339 0.95227 0.88651 1.21021 0.90901 0.99416 1.03984 1.18033 0.88191 0.86205 1.04795 1.86090 1.34069 1.13799 1.89624 1.23295 1.00853 0.81742 1.01589 0.91867 0.91845 0.87957 0.91054 0.91087 0.81976 0.83499 0.91846 0.88971 0.92243 0.91152 0.95153 0.94396 0.88793 0.92809 0.84607 0.85294 0.92742 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.04 0.82 5.46 71.98 0.39 1.21 16 3 O -0.32 -9.78 9.91 -77.36 -0.77 -10.55 16 4 C 0.11 3.89 6.71 22.70 0.15 4.04 16 5 C -0.18 -6.26 9.01 22.31 0.20 -6.06 16 6 C -0.06 -2.69 7.78 22.53 0.18 -2.52 16 7 C -0.12 -5.56 5.45 -20.09 -0.11 -5.67 16 8 C 0.50 25.98 7.32 86.68 0.63 26.61 16 9 O -0.64 -35.43 16.47 -4.10 -0.07 -35.50 16 10 N -0.43 -22.00 2.44 -639.18 -1.56 -23.56 16 11 C -0.33 -16.45 5.85 84.09 0.49 -15.95 16 12 H 0.09 4.38 6.49 -2.91 -0.02 4.36 16 13 C 0.01 0.63 4.93 84.95 0.42 1.05 16 14 N -0.89 -46.68 11.64 21.68 0.25 -46.43 16 15 Si 0.97 39.31 29.58 68.60 2.03 41.34 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 17 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 C 0.12 5.73 5.31 86.38 0.46 6.19 16 20 C 0.06 2.62 6.25 71.98 0.45 3.07 16 21 O -0.40 -16.51 10.42 -148.98 -1.55 -18.07 16 22 C 0.03 0.75 11.01 113.37 1.25 2.00 16 23 C -0.13 -5.39 8.60 22.62 0.19 -5.20 16 24 C 0.07 2.69 6.69 22.53 0.15 2.84 16 25 O -0.32 -10.62 10.28 -79.55 -0.82 -11.44 16 26 C 0.02 0.48 9.81 113.37 1.11 1.59 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.40 7.65 -2.39 -0.02 1.38 16 31 H 0.07 1.40 7.65 -2.39 -0.02 1.38 16 32 H 0.16 4.40 6.27 -2.91 -0.02 4.38 16 33 H 0.15 6.63 5.70 -2.91 -0.02 6.61 16 34 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.09 4.76 5.84 -2.39 -0.01 4.75 16 36 H 0.06 2.97 7.52 -2.39 -0.02 2.95 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.14 5.29 6.23 -2.91 -0.02 5.28 16 43 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 1.34 7.65 -2.39 -0.02 1.32 16 45 H 0.05 1.32 7.67 -2.38 -0.02 1.30 16 Total: -1.00 -67.74 372.77 5.23 -62.51 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 1.00 Total: 30.04 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.71 Total: 11.65 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.31 Total: -69.99 kcal Atomic # 8 Polarization: -72.35 SS G_CDS: -3.20 Total: -75.55 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -67.74 5.23 -62.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.826 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds