Wall clock time and date at job start Tue Mar 31 2020 13:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.46859 * 2 1 4 4 C 1.35985 * 116.99714 * 180.02562 * 3 2 1 5 5 C 1.38692 * 120.00218 * 359.72008 * 4 3 2 6 6 C 1.38131 * 120.00106 * 179.76794 * 5 4 3 7 7 C 1.38700 * 119.99711 * 0.50671 * 6 5 4 8 8 O 1.35981 * 119.99955 * 179.72089 * 7 6 5 9 9 C 1.42902 * 116.99923 * 0.03109 * 8 7 6 10 10 C 1.50702 * 109.46757 * 179.97438 * 9 8 7 11 11 O 1.21292 * 120.00457 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99743 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99959 * 0.02562 * 12 10 9 14 14 H 1.07996 * 119.99916 * 322.10739 * 13 12 10 15 15 C 1.38939 * 119.99757 * 142.10905 * 13 12 10 16 16 N 1.31417 * 120.00087 * 157.75157 * 15 13 12 17 17 Si 1.86806 * 120.00484 * 337.75304 * 15 13 12 18 18 H 1.48501 * 109.47061 * 95.34081 * 17 15 13 19 19 H 1.48501 * 109.46976 * 215.34231 * 17 15 13 20 20 H 1.48498 * 109.46516 * 335.34026 * 17 15 13 21 21 C 1.46499 * 120.00097 * 180.02562 * 12 10 9 22 22 C 1.52999 * 109.47276 * 86.64903 * 21 12 10 23 23 O 1.42907 * 109.46865 * 66.05800 * 22 21 12 24 24 C 1.42902 * 113.99883 * 180.02562 * 23 22 21 25 25 C 1.38696 * 120.00195 * 359.75109 * 7 6 5 26 26 C 1.38136 * 119.99613 * 359.97438 * 25 7 6 27 27 H 1.08998 * 109.47730 * 300.00005 * 1 2 3 28 28 H 1.09001 * 109.47552 * 60.00119 * 1 2 3 29 29 H 1.09005 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47226 * 240.00124 * 2 1 3 31 31 H 1.09006 * 109.47351 * 119.99444 * 2 1 3 32 32 H 1.07999 * 120.00315 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.00346 * 180.23717 * 6 5 4 34 34 H 1.08998 * 109.46715 * 299.99036 * 9 8 7 35 35 H 1.08998 * 109.47012 * 60.00056 * 9 8 7 36 36 H 0.96994 * 120.00554 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.47350 * 206.65339 * 21 12 10 38 38 H 1.09003 * 109.46890 * 326.65398 * 21 12 10 39 39 H 1.09001 * 109.47294 * 186.05705 * 22 21 12 40 40 H 1.09005 * 109.47382 * 306.05892 * 22 21 12 41 41 H 1.09002 * 109.47206 * 300.00291 * 24 23 22 42 42 H 1.08999 * 109.47091 * 60.00288 * 24 23 22 43 43 H 1.08993 * 109.47047 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00571 * 179.97438 * 25 7 6 45 45 H 1.08001 * 119.99667 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1993 0.4257 0.0048 6 6 5.5686 0.6067 -0.0006 7 6 6.0987 1.8884 -0.0007 8 8 7.4468 2.0666 -0.0003 9 6 8.2568 0.8893 -0.0004 10 6 9.7121 1.2809 -0.0005 11 8 10.0248 2.4529 -0.0001 12 7 10.6661 0.3289 -0.0001 13 6 10.3127 -0.9958 -0.0001 14 1 9.4601 -1.3271 0.5740 15 6 11.0513 -1.9118 -0.7388 16 7 11.0194 -3.1875 -0.4247 17 14 12.0900 -1.3303 -2.1785 18 1 13.4877 -1.1151 -1.7254 19 1 12.0696 -2.3577 -3.2505 20 1 11.5381 -0.0557 -2.7039 21 6 12.0808 0.7095 0.0003 22 6 12.5509 0.9236 1.4405 23 8 12.5160 -0.3205 2.1428 24 6 12.9380 -0.2309 3.5051 25 6 5.2538 2.9883 -0.0007 26 6 3.8844 2.8072 -0.0010 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.7866 -0.5723 0.0090 33 1 6.2266 -0.2498 -0.0003 34 1 8.0393 0.2986 0.8894 35 1 8.0397 0.2990 -0.8906 36 1 11.5353 -3.8270 -0.9401 37 1 12.6705 -0.0830 -0.4604 38 1 12.2088 1.6329 -0.5646 39 1 13.5701 1.3100 1.4364 40 1 11.8933 1.6385 1.9350 41 1 13.9652 0.1319 3.5443 42 1 12.2880 0.4599 4.0421 43 1 12.8823 -1.2160 3.9683 44 1 5.6665 3.9863 -0.0004 45 1 3.2265 3.6637 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457179662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:08 Heat of formation + Delta-G solvation = -111.346483 kcal Electronic energy + Delta-G solvation = -27270.220280 eV Core-core repulsion = 23254.871590 eV Total energy + Delta-G solvation = -4015.348691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.30417 -39.30160 -38.45115 -37.06872 -36.13048 -34.81985 -32.05864 -31.94108 -31.04300 -30.09776 -28.74147 -27.13639 -25.80023 -24.71531 -24.15382 -22.74981 -21.84039 -21.47910 -19.15273 -18.40409 -17.62424 -17.31846 -16.38744 -16.19589 -15.93132 -15.84816 -15.47122 -15.31439 -14.77523 -14.60382 -14.43742 -14.12676 -13.67362 -13.63281 -13.44601 -13.28379 -13.14859 -12.68920 -12.57483 -12.44495 -12.14580 -12.01585 -11.78235 -11.65979 -11.56177 -11.40035 -10.98102 -10.93728 -10.81207 -10.56803 -10.21055 -10.11949 -9.98141 -9.24196 -9.10748 -8.97902 -8.63063 -7.89901 -7.55653 -6.51071 -4.10249 1.35702 1.61078 3.01519 3.15120 3.18263 3.25392 3.34201 3.56364 3.86104 4.10232 4.36847 4.52088 4.72408 4.72884 4.88146 4.91680 5.00999 5.05071 5.23708 5.34616 5.50042 5.55865 5.57124 5.57800 5.62288 5.72171 5.77842 5.78502 5.82122 5.83797 5.93351 5.96417 5.99625 6.04084 6.16170 6.22709 6.39790 6.42074 6.49787 6.69140 7.24387 7.38802 7.73251 7.77580 7.99474 8.16111 8.89219 9.25427 9.56137 10.59361 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.002894 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.770875 B = 9671.662608 C =10227.952948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.081 3.919 5 C -0.165 4.165 6 C -0.171 4.171 7 C 0.107 3.893 8 O -0.295 6.295 9 C 0.063 3.937 10 C 0.480 3.520 11 O -0.583 6.583 12 N -0.449 5.449 13 C -0.344 4.344 14 H 0.102 0.898 15 C 0.078 3.922 16 N -0.849 5.849 17 Si 0.870 3.130 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.261 1.261 21 C 0.104 3.896 22 C 0.054 3.946 23 O -0.359 6.359 24 C 0.032 3.968 25 C -0.116 4.116 26 C -0.113 4.113 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.275 0.725 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 4.159 2.108 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.036 3.964 5 C -0.184 4.184 6 C -0.190 4.190 7 C 0.061 3.939 8 O -0.207 6.207 9 C -0.015 4.015 10 C 0.269 3.731 11 O -0.467 6.467 12 N -0.171 5.171 13 C -0.471 4.471 14 H 0.119 0.881 15 C -0.131 4.131 16 N -0.484 5.484 17 Si 0.697 3.303 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.185 1.185 21 C -0.019 4.019 22 C -0.024 4.024 23 O -0.277 6.277 24 C -0.065 4.065 25 C -0.135 4.135 26 C -0.132 4.132 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.155 0.845 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.204 4.655 1.986 12.294 hybrid contribution 0.871 -0.449 -0.466 1.085 sum -10.333 4.206 1.520 11.259 Atomic orbital electron populations 1.21763 0.92994 1.02698 1.03351 1.22727 0.95615 0.82400 1.01386 1.86036 1.19098 1.28792 1.89593 1.18806 0.82143 0.94056 1.01377 1.21017 0.93496 0.98038 1.05868 1.21240 0.95670 0.96772 1.05298 1.19036 0.83553 0.93460 0.97878 1.86136 1.13041 1.33373 1.88184 1.22350 0.89715 0.85925 1.03518 1.19757 0.86605 0.85540 0.81221 1.90580 1.83000 1.18234 1.54902 1.43509 1.02635 1.06370 1.64542 1.18941 1.17945 0.80134 1.30070 0.88072 1.25229 0.96210 0.94785 0.96875 1.69775 1.39069 1.02264 1.37257 0.87052 0.80630 0.79590 0.83016 1.19942 1.21287 1.18481 1.21740 0.84273 1.01035 0.94869 1.22867 0.98625 0.86768 0.94114 1.88206 1.87469 1.29894 1.22087 1.22660 0.97281 1.01972 0.84601 1.20238 0.91125 0.98142 1.03988 1.20150 0.93987 0.94852 1.04188 0.91637 0.91629 0.90520 0.92155 0.92162 0.85432 0.84490 0.89852 0.89155 0.91493 0.90328 0.89758 0.93769 0.93162 0.95135 0.94873 0.90071 0.84477 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.15 0.38 -0.67 16 2 C 0.05 0.50 5.46 37.15 0.20 0.70 16 3 O -0.32 -3.96 10.14 -19.69 -0.20 -4.16 16 4 C 0.08 1.09 6.68 -39.25 -0.26 0.83 16 5 C -0.17 -2.23 9.03 -39.45 -0.36 -2.59 16 6 C -0.17 -2.61 9.03 -39.45 -0.36 -2.97 16 7 C 0.11 1.80 6.69 -39.24 -0.26 1.54 16 8 O -0.29 -5.86 9.67 -39.59 -0.38 -6.24 16 9 C 0.06 1.26 3.92 36.01 0.14 1.40 16 10 C 0.48 11.24 7.70 -10.98 -0.08 11.16 16 11 O -0.58 -14.83 16.13 -14.36 -0.23 -15.06 16 12 N -0.45 -10.66 2.14 -114.82 -0.25 -10.91 16 13 C -0.34 -8.68 8.76 -14.94 -0.13 -8.81 16 14 H 0.10 2.64 7.24 -52.49 -0.38 2.26 16 15 C 0.08 2.00 5.28 -17.47 -0.09 1.91 16 16 N -0.85 -22.87 13.96 55.50 0.77 -22.10 16 17 Si 0.87 19.94 25.06 -169.99 -4.26 15.68 16 18 H -0.27 -6.06 6.67 56.52 0.38 -5.68 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.10 2.28 4.47 -4.04 -0.02 2.26 16 22 C 0.05 1.07 6.26 37.16 0.23 1.30 16 23 O -0.36 -7.58 10.38 -35.23 -0.37 -7.94 16 24 C 0.03 0.51 11.01 101.05 1.11 1.62 16 25 C -0.12 -1.71 9.98 -39.45 -0.39 -2.10 16 26 C -0.11 -1.50 9.98 -39.45 -0.39 -1.89 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 31 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.13 1.43 6.29 -52.49 -0.33 1.10 16 33 H 0.14 2.03 6.29 -52.49 -0.33 1.70 16 34 H 0.08 1.58 7.18 -51.93 -0.37 1.20 16 35 H 0.09 1.73 7.62 -51.93 -0.40 1.33 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.08 1.78 3.48 -51.93 -0.18 1.60 16 38 H 0.08 1.76 7.53 -51.93 -0.39 1.37 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.09 373.41 -6.13 -37.22 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.56 Total: 4.21 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.28 Total: 3.68 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.53 Total: -33.01 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.18 Total: -33.41 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.26 Total: 15.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.09 -6.13 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.126 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds