Wall clock time and date at job start Tue Mar 31 2020 13:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.46859 * 2 1 4 4 C 1.35985 * 116.99714 * 180.02562 * 3 2 1 5 5 C 1.38692 * 120.00218 * 359.72008 * 4 3 2 6 6 C 1.38131 * 120.00106 * 179.76794 * 5 4 3 7 7 C 1.38700 * 119.99711 * 0.50671 * 6 5 4 8 8 O 1.35981 * 119.99955 * 179.72089 * 7 6 5 9 9 C 1.42902 * 116.99923 * 0.03109 * 8 7 6 10 10 C 1.50702 * 109.46757 * 179.97438 * 9 8 7 11 11 O 1.21292 * 120.00457 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99743 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99959 * 0.02562 * 12 10 9 14 14 H 1.07996 * 119.99916 * 322.10739 * 13 12 10 15 15 C 1.38939 * 119.99757 * 142.10905 * 13 12 10 16 16 N 1.31417 * 120.00087 * 157.75157 * 15 13 12 17 17 Si 1.86806 * 120.00484 * 337.75304 * 15 13 12 18 18 H 1.48501 * 109.47061 * 95.34081 * 17 15 13 19 19 H 1.48501 * 109.46976 * 215.34231 * 17 15 13 20 20 H 1.48498 * 109.46516 * 335.34026 * 17 15 13 21 21 C 1.46499 * 120.00097 * 180.02562 * 12 10 9 22 22 C 1.52999 * 109.47276 * 86.64903 * 21 12 10 23 23 O 1.42907 * 109.46865 * 66.05800 * 22 21 12 24 24 C 1.42902 * 113.99883 * 180.02562 * 23 22 21 25 25 C 1.38696 * 120.00195 * 359.75109 * 7 6 5 26 26 C 1.38136 * 119.99613 * 359.97438 * 25 7 6 27 27 H 1.08998 * 109.47730 * 300.00005 * 1 2 3 28 28 H 1.09001 * 109.47552 * 60.00119 * 1 2 3 29 29 H 1.09005 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47226 * 240.00124 * 2 1 3 31 31 H 1.09006 * 109.47351 * 119.99444 * 2 1 3 32 32 H 1.07999 * 120.00315 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.00346 * 180.23717 * 6 5 4 34 34 H 1.08998 * 109.46715 * 299.99036 * 9 8 7 35 35 H 1.08998 * 109.47012 * 60.00056 * 9 8 7 36 36 H 0.96994 * 120.00554 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.47350 * 206.65339 * 21 12 10 38 38 H 1.09003 * 109.46890 * 326.65398 * 21 12 10 39 39 H 1.09001 * 109.47294 * 186.05705 * 22 21 12 40 40 H 1.09005 * 109.47382 * 306.05892 * 22 21 12 41 41 H 1.09002 * 109.47206 * 300.00291 * 24 23 22 42 42 H 1.08999 * 109.47091 * 60.00288 * 24 23 22 43 43 H 1.08993 * 109.47047 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00571 * 179.97438 * 25 7 6 45 45 H 1.08001 * 119.99667 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1993 0.4257 0.0048 6 6 5.5686 0.6067 -0.0006 7 6 6.0987 1.8884 -0.0007 8 8 7.4468 2.0666 -0.0003 9 6 8.2568 0.8893 -0.0004 10 6 9.7121 1.2809 -0.0005 11 8 10.0248 2.4529 -0.0001 12 7 10.6661 0.3289 -0.0001 13 6 10.3127 -0.9958 -0.0001 14 1 9.4601 -1.3271 0.5740 15 6 11.0513 -1.9118 -0.7388 16 7 11.0194 -3.1875 -0.4247 17 14 12.0900 -1.3303 -2.1785 18 1 13.4877 -1.1151 -1.7254 19 1 12.0696 -2.3577 -3.2505 20 1 11.5381 -0.0557 -2.7039 21 6 12.0808 0.7095 0.0003 22 6 12.5509 0.9236 1.4405 23 8 12.5160 -0.3205 2.1428 24 6 12.9380 -0.2309 3.5051 25 6 5.2538 2.9883 -0.0007 26 6 3.8844 2.8072 -0.0010 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.7866 -0.5723 0.0090 33 1 6.2266 -0.2498 -0.0003 34 1 8.0393 0.2986 0.8894 35 1 8.0397 0.2990 -0.8906 36 1 11.5353 -3.8270 -0.9401 37 1 12.6705 -0.0830 -0.4604 38 1 12.2088 1.6329 -0.5646 39 1 13.5701 1.3100 1.4364 40 1 11.8933 1.6385 1.9350 41 1 13.9652 0.1319 3.5443 42 1 12.2880 0.4599 4.0421 43 1 12.8823 -1.2160 3.9683 44 1 5.6665 3.9863 -0.0004 45 1 3.2265 3.6637 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457179662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:07 Heat of formation + Delta-G solvation = -130.086976 kcal Electronic energy + Delta-G solvation = -27271.032929 eV Core-core repulsion = 23254.871590 eV Total energy + Delta-G solvation = -4016.161339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52620 -40.83361 -39.80448 -38.59095 -37.35386 -36.67075 -34.00423 -32.70697 -32.21715 -31.63218 -29.98000 -28.57835 -27.25720 -26.54885 -25.03716 -24.22673 -23.06857 -22.50912 -20.99966 -19.53362 -19.16861 -18.75227 -18.07311 -17.56584 -17.15594 -17.09557 -16.92851 -16.88591 -16.27326 -16.05249 -15.77901 -15.66921 -15.23790 -14.84798 -14.52281 -14.48453 -14.42893 -14.14203 -13.99749 -13.58662 -13.37372 -13.24279 -13.15882 -13.12411 -12.93899 -12.61992 -12.48101 -12.43835 -12.04638 -11.98593 -11.74912 -11.64803 -11.27636 -11.10822 -10.64204 -10.43764 -10.08147 -9.81068 -8.72915 -8.48986 -6.09962 0.25316 0.45516 1.19503 1.32312 1.43081 1.72695 1.80173 2.20556 2.30266 2.72931 2.81508 2.89620 3.12746 3.73188 3.83509 3.94712 4.06357 4.09123 4.11377 4.17052 4.20563 4.24021 4.30098 4.36531 4.40440 4.45318 4.50193 4.51125 4.54472 4.59061 4.75627 4.78376 4.83805 4.94287 4.97775 5.08333 5.20987 5.32750 5.35872 5.37910 5.58266 6.01020 6.18272 6.31967 6.36826 6.52516 6.94613 7.33405 7.66808 8.64586 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.002894 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.770875 B = 9671.662608 C =10227.952948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 O -0.328 6.328 4 C 0.084 3.916 5 C -0.167 4.167 6 C -0.177 4.177 7 C 0.073 3.927 8 O -0.317 6.317 9 C 0.074 3.926 10 C 0.474 3.526 11 O -0.606 6.606 12 N -0.455 5.455 13 C -0.340 4.340 14 H 0.084 0.916 15 C 0.044 3.956 16 N -0.884 5.884 17 Si 0.917 3.083 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.093 3.907 22 C 0.060 3.940 23 O -0.397 6.397 24 C 0.027 3.973 25 C -0.117 4.117 26 C -0.112 4.112 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.279 0.721 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.088 0.912 44 H 0.146 0.854 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 4.439 2.072 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.039 3.961 5 C -0.185 4.185 6 C -0.196 4.196 7 C 0.028 3.972 8 O -0.230 6.230 9 C -0.004 4.004 10 C 0.263 3.737 11 O -0.492 6.492 12 N -0.176 5.176 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.162 4.162 16 N -0.520 5.520 17 Si 0.743 3.257 18 H -0.185 1.185 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.029 4.029 22 C -0.018 4.018 23 O -0.316 6.316 24 C -0.069 4.069 25 C -0.136 4.136 26 C -0.130 4.130 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.164 0.836 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.978 4.930 1.960 13.100 hybrid contribution 0.950 -0.526 -0.385 1.152 sum -11.028 4.404 1.575 11.979 Atomic orbital electron populations 1.21789 0.91255 1.04095 1.03288 1.23053 0.97054 0.81040 1.02074 1.86050 1.18123 1.30886 1.89196 1.18980 0.82884 0.94139 1.00073 1.21232 0.92697 0.99361 1.05255 1.21292 0.96568 0.96164 1.05538 1.19335 0.82438 0.94895 1.00519 1.86078 1.14670 1.33110 1.89184 1.22140 0.88061 0.86239 1.03972 1.20278 0.87874 0.85157 0.80361 1.90547 1.83678 1.19056 1.55892 1.43604 1.03655 1.05838 1.64514 1.18817 1.17432 0.80785 1.29639 0.89853 1.25705 0.97320 0.94734 0.98446 1.69831 1.40571 1.03196 1.38436 0.86295 0.80064 0.78856 0.80514 1.18548 1.20852 1.18998 1.21913 0.83224 1.01006 0.96798 1.22797 1.00286 0.86297 0.92411 1.88135 1.88213 1.30722 1.24546 1.22867 0.98863 1.02906 0.82304 1.20429 0.91590 0.98054 1.03521 1.20419 0.93598 0.95835 1.03174 0.91692 0.91701 0.88403 0.91468 0.91446 0.83237 0.84735 0.89284 0.88653 0.91113 0.90933 0.89044 0.90243 0.94042 0.92507 0.94147 0.89348 0.83620 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.04 0.68 5.46 71.98 0.39 1.08 16 3 O -0.33 -7.41 10.14 -93.38 -0.95 -8.36 16 4 C 0.08 2.14 6.68 22.49 0.15 2.29 16 5 C -0.17 -4.30 9.03 22.35 0.20 -4.10 16 6 C -0.18 -5.39 9.03 22.35 0.20 -5.19 16 7 C 0.07 2.48 6.69 22.49 0.15 2.63 16 8 O -0.32 -12.84 9.67 -74.30 -0.72 -13.56 16 9 C 0.07 3.02 3.92 71.24 0.28 3.30 16 10 C 0.47 22.48 7.70 87.66 0.67 23.15 16 11 O -0.61 -31.12 16.13 15.97 0.26 -30.87 16 12 N -0.45 -21.72 2.14 -635.55 -1.36 -23.08 16 13 C -0.34 -17.36 8.76 84.04 0.74 -16.62 16 14 H 0.08 4.48 7.24 -2.91 -0.02 4.46 16 15 C 0.04 2.26 5.28 84.92 0.45 2.71 16 16 N -0.88 -47.95 13.96 21.66 0.30 -47.65 16 17 Si 0.92 40.72 25.06 68.60 1.72 42.44 16 18 H -0.26 -10.91 6.67 99.48 0.66 -10.25 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 C 0.09 4.03 4.47 86.38 0.39 4.41 16 22 C 0.06 2.28 6.26 71.98 0.45 2.73 16 23 O -0.40 -16.48 10.38 -148.98 -1.55 -18.02 16 24 C 0.03 0.81 11.01 113.37 1.25 2.06 16 25 C -0.12 -3.38 9.98 22.36 0.22 -3.16 16 26 C -0.11 -2.78 9.98 22.35 0.22 -2.56 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 31 H 0.07 1.00 7.65 -2.38 -0.02 0.98 16 32 H 0.15 3.08 6.29 -2.91 -0.02 3.06 16 33 H 0.13 4.07 6.29 -2.91 -0.02 4.05 16 34 H 0.09 3.48 7.18 -2.39 -0.02 3.47 16 35 H 0.10 3.74 7.62 -2.39 -0.02 3.72 16 36 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.07 3.21 3.48 -2.39 -0.01 3.20 16 38 H 0.09 3.76 7.53 -2.39 -0.02 3.74 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 45 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -66.36 373.41 5.16 -61.20 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.95 Total: 26.12 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.51 Total: 11.78 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -1.06 Total: -70.73 kcal Atomic # 8 Polarization: -67.86 SS G_CDS: -2.95 Total: -70.81 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.72 Total: 42.44 kcal Total: -66.36 5.16 -61.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.887 kcal (2) G-P(sol) polarization free energy of solvation -66.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds