Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99349 * 2 1 4 4 C 1.53006 * 109.46638 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47261 * 64.99526 * 4 3 2 6 6 C 1.37090 * 120.00230 * 264.46756 * 5 4 3 7 7 H 1.08000 * 120.00054 * 138.26353 * 6 5 4 8 8 C 1.38958 * 120.00160 * 318.27078 * 6 5 4 9 9 N 1.31410 * 119.99859 * 341.88963 * 8 6 5 10 10 Si 1.86796 * 120.00109 * 161.88996 * 8 6 5 11 11 H 1.48504 * 109.47231 * 59.99753 * 10 8 6 12 12 H 1.48497 * 109.47343 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47016 * 300.00033 * 10 8 6 14 14 C 1.34782 * 119.99689 * 84.47328 * 5 4 3 15 15 O 1.21287 * 119.99868 * 359.97438 * 14 5 4 16 16 C 1.50694 * 119.99637 * 180.02562 * 14 5 4 17 17 O 1.42902 * 109.46959 * 179.97438 * 16 14 5 18 18 C 1.42902 * 113.99810 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47036 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46652 * 65.00166 * 19 18 17 21 21 C 1.35901 * 116.99393 * 180.02562 * 20 19 18 22 22 C 1.38734 * 120.05567 * 179.97438 * 21 20 19 23 23 C 1.38142 * 119.94765 * 179.97438 * 22 21 20 24 24 C 1.38261 * 120.05563 * 0.02562 * 23 22 21 25 25 C 1.38271 * 120.11058 * 359.96181 * 24 23 22 26 26 C 1.38140 * 120.05329 * 0.03903 * 25 24 23 27 27 H 1.09001 * 109.46720 * 60.00883 * 1 2 3 28 28 H 1.09005 * 109.46862 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47461 * 300.00149 * 1 2 3 30 30 H 1.08993 * 109.47891 * 59.99776 * 3 2 1 31 31 H 1.09000 * 109.47127 * 299.98775 * 3 2 1 32 32 H 1.09000 * 109.47149 * 304.99224 * 4 3 2 33 33 H 1.09004 * 109.46987 * 185.00081 * 4 3 2 34 34 H 0.96993 * 120.00156 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47580 * 59.99544 * 16 14 5 36 36 H 1.09001 * 109.47443 * 299.99710 * 16 14 5 37 37 H 1.08998 * 109.47271 * 59.99845 * 18 17 16 38 38 H 1.09001 * 109.47214 * 299.99612 * 18 17 16 39 39 H 1.08994 * 109.47042 * 305.00081 * 19 18 17 40 40 H 1.09004 * 109.47130 * 184.99818 * 19 18 17 41 41 H 1.08007 * 120.02224 * 359.69822 * 22 21 20 42 42 H 1.08005 * 119.97301 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.94614 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.97071 * 180.02562 * 25 24 23 45 45 H 1.08006 * 120.02543 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2072 -0.7864 -1.3021 7 1 3.8795 -1.3581 -2.1578 8 6 4.8626 -1.4198 -0.2531 9 7 5.5676 -0.7144 0.6026 10 14 4.7413 -3.2737 -0.0594 11 1 5.2845 -3.9348 -1.2732 12 1 5.5236 -3.6995 1.1288 13 1 3.3189 -3.6606 0.1203 14 6 4.1560 1.3206 -2.3517 15 8 3.9517 2.5153 -2.3064 16 6 4.6094 0.6819 -3.6391 17 8 4.7252 1.6829 -4.6524 18 6 5.1520 1.1800 -5.9201 19 6 5.2398 2.3325 -6.9226 20 8 6.2625 3.2429 -6.5133 21 6 6.4710 4.3309 -7.3005 22 6 7.4477 5.2563 -6.9624 23 6 7.6581 6.3611 -7.7644 24 6 6.8959 6.5455 -8.9031 25 6 5.9219 5.6245 -9.2425 26 6 5.7077 4.5180 -8.4437 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8507 0.5687 0.8428 33 1 3.9784 2.1767 0.0902 34 1 6.0248 -1.1564 1.3350 35 1 3.8805 -0.0666 -3.9499 36 1 5.5776 0.2049 -3.4869 37 1 4.4349 0.4413 -6.2781 38 1 6.1318 0.7140 -5.8149 39 1 4.2835 2.8538 -6.9615 40 1 5.4789 1.9376 -7.9101 41 1 8.0401 5.1152 -6.0703 42 1 8.4181 7.0820 -7.5014 43 1 7.0616 7.4101 -9.5287 44 1 5.3281 5.7705 -10.1327 45 1 4.9465 3.7992 -8.7090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457183412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = -125.692681 kcal Electronic energy + Delta-G solvation = -26971.640235 eV Core-core repulsion = 22955.669447 eV Total energy + Delta-G solvation = -4015.970788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10005 -38.77435 -37.73270 -37.07224 -36.44762 -34.57211 -31.58324 -31.36471 -30.75707 -29.68944 -29.06197 -26.60716 -25.67841 -24.54609 -23.63740 -22.45225 -21.79101 -21.44552 -19.11891 -18.39794 -17.17136 -16.70215 -16.29030 -16.02406 -15.75773 -15.56722 -15.35268 -15.17954 -14.90068 -14.59030 -14.34524 -14.28399 -14.01263 -13.60449 -13.42966 -13.38220 -12.72687 -12.64959 -12.17796 -11.99421 -11.74013 -11.67194 -11.36435 -11.24584 -11.15644 -11.00966 -10.94926 -10.94502 -10.73211 -10.62451 -10.37596 -10.04277 -9.19600 -9.09720 -9.09320 -8.95666 -8.35101 -8.22628 -7.44460 -6.32890 -4.05673 1.25209 1.39217 3.17042 3.20265 3.25252 3.29377 3.71366 3.75526 3.92519 4.20786 4.52115 4.69236 4.78580 4.91006 4.96706 5.01996 5.06764 5.14426 5.28669 5.34813 5.45458 5.48274 5.60040 5.67082 5.72995 5.75162 5.92444 5.94138 5.99174 5.99936 6.07557 6.18986 6.25176 6.31822 6.36734 6.38193 6.43679 6.70964 6.73205 7.24815 7.42302 7.45453 7.60063 7.83724 8.03120 8.38561 9.13395 9.53257 9.95885 10.71111 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002555 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.087056 B =10955.727707 C =11567.551000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.124 3.876 5 N -0.430 5.430 6 C -0.332 4.332 7 H 0.083 0.917 8 C 0.051 3.949 9 N -0.863 5.863 10 Si 0.915 3.085 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.477 3.523 15 O -0.590 6.590 16 C 0.065 3.935 17 O -0.362 6.362 18 C 0.061 3.939 19 C 0.065 3.935 20 O -0.300 6.300 21 C 0.138 3.862 22 C -0.153 4.153 23 C -0.081 4.081 24 C -0.167 4.167 25 C -0.082 4.082 26 C -0.214 4.214 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 5.061 -13.894 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C 0.001 3.999 5 N -0.150 5.150 6 C -0.460 4.460 7 H 0.101 0.899 8 C -0.155 4.155 9 N -0.499 5.499 10 Si 0.742 3.258 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.265 3.735 15 O -0.474 6.474 16 C -0.014 4.014 17 O -0.280 6.280 18 C -0.016 4.016 19 C -0.010 4.010 20 O -0.213 6.213 21 C 0.092 3.908 22 C -0.172 4.172 23 C -0.099 4.099 24 C -0.185 4.185 25 C -0.100 4.100 26 C -0.233 4.233 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.885 5.573 -13.449 14.584 hybrid contribution -0.474 -1.180 0.008 1.272 sum -1.359 4.393 -13.440 14.205 Atomic orbital electron populations 1.22644 0.83440 1.01690 0.98861 1.88128 1.17373 1.27804 1.95056 1.23066 0.96595 0.84271 0.98782 1.21339 0.89030 0.98940 0.90635 1.43161 1.57264 1.07247 1.07301 1.19191 1.37002 0.82126 1.07675 0.89919 1.25350 0.93587 0.99839 0.96758 1.69917 1.27417 1.36800 1.15771 0.86204 0.78635 0.83148 0.77827 1.19949 1.21070 1.19610 1.20037 0.81135 0.86453 0.85908 1.90547 1.56037 1.15159 1.85675 1.22070 1.01577 0.90071 0.87718 1.88037 1.88356 1.33549 1.18089 1.22476 0.99809 0.94151 0.85213 1.22879 0.90947 0.90192 0.97015 1.86225 1.54255 1.32008 1.48809 1.19129 0.94285 0.87674 0.89726 1.20533 0.99826 0.94664 1.02175 1.20963 0.98625 0.96299 0.94044 1.21017 0.98405 1.00474 0.98637 1.20916 0.97028 0.93441 0.98625 1.21279 1.03395 1.01472 0.97116 0.94993 0.90454 0.95150 0.94227 0.93937 0.87556 0.91144 0.92028 0.91734 0.90507 0.91336 0.92229 0.91049 0.90780 0.85036 0.85509 0.86176 0.86039 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.82 10.44 -35.23 -0.37 -8.19 16 3 C 0.05 1.07 6.24 37.16 0.23 1.30 16 4 C 0.12 3.02 5.26 -4.04 -0.02 3.00 16 5 N -0.43 -11.01 2.45 -114.81 -0.28 -11.29 16 6 C -0.33 -8.44 8.29 -14.93 -0.12 -8.57 16 7 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 8 C 0.05 1.29 4.95 -17.47 -0.09 1.21 16 9 N -0.86 -22.96 11.66 55.50 0.65 -22.31 16 10 Si 0.92 19.74 29.59 -169.99 -5.03 14.71 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 C 0.48 12.17 7.67 -10.99 -0.08 12.08 16 15 O -0.59 -16.57 16.17 -14.36 -0.23 -16.80 16 16 C 0.06 1.37 5.15 36.00 0.19 1.56 16 17 O -0.36 -7.41 9.84 -59.73 -0.59 -7.99 16 18 C 0.06 0.88 6.32 37.16 0.23 1.12 16 19 C 0.06 0.84 5.12 37.16 0.19 1.03 16 20 O -0.30 -4.78 10.10 -24.28 -0.25 -5.02 16 21 C 0.14 1.94 6.69 -39.22 -0.26 1.68 16 22 C -0.15 -2.00 9.99 -39.43 -0.39 -2.39 16 23 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 24 C -0.17 -1.65 10.04 -39.56 -0.40 -2.05 16 25 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 26 C -0.21 -2.51 9.04 -39.44 -0.36 -2.87 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 2.74 5.81 -51.93 -0.30 2.43 16 33 H 0.07 1.73 7.59 -51.93 -0.39 1.34 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.06 1.23 7.71 -51.93 -0.40 0.83 16 36 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 40 H 0.07 0.70 7.66 -51.93 -0.40 0.31 16 41 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.25 6.30 -52.48 -0.33 0.92 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -33.04 383.00 -7.70 -40.74 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.81 Total: 4.18 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.57 Total: 6.21 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.37 Total: -33.60 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.43 Total: -38.01 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.04 -7.70 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.953 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds