Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99349 * 2 1 4 4 C 1.53006 * 109.46638 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47261 * 64.99526 * 4 3 2 6 6 C 1.37090 * 120.00230 * 264.46756 * 5 4 3 7 7 H 1.08000 * 120.00054 * 138.26353 * 6 5 4 8 8 C 1.38958 * 120.00160 * 318.27078 * 6 5 4 9 9 N 1.31410 * 119.99859 * 341.88963 * 8 6 5 10 10 Si 1.86796 * 120.00109 * 161.88996 * 8 6 5 11 11 H 1.48504 * 109.47231 * 59.99753 * 10 8 6 12 12 H 1.48497 * 109.47343 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47016 * 300.00033 * 10 8 6 14 14 C 1.34782 * 119.99689 * 84.47328 * 5 4 3 15 15 O 1.21287 * 119.99868 * 359.97438 * 14 5 4 16 16 C 1.50694 * 119.99637 * 180.02562 * 14 5 4 17 17 O 1.42902 * 109.46959 * 179.97438 * 16 14 5 18 18 C 1.42902 * 113.99810 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47036 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46652 * 65.00166 * 19 18 17 21 21 C 1.35901 * 116.99393 * 180.02562 * 20 19 18 22 22 C 1.38734 * 120.05567 * 179.97438 * 21 20 19 23 23 C 1.38142 * 119.94765 * 179.97438 * 22 21 20 24 24 C 1.38261 * 120.05563 * 0.02562 * 23 22 21 25 25 C 1.38271 * 120.11058 * 359.96181 * 24 23 22 26 26 C 1.38140 * 120.05329 * 0.03903 * 25 24 23 27 27 H 1.09001 * 109.46720 * 60.00883 * 1 2 3 28 28 H 1.09005 * 109.46862 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47461 * 300.00149 * 1 2 3 30 30 H 1.08993 * 109.47891 * 59.99776 * 3 2 1 31 31 H 1.09000 * 109.47127 * 299.98775 * 3 2 1 32 32 H 1.09000 * 109.47149 * 304.99224 * 4 3 2 33 33 H 1.09004 * 109.46987 * 185.00081 * 4 3 2 34 34 H 0.96993 * 120.00156 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47580 * 59.99544 * 16 14 5 36 36 H 1.09001 * 109.47443 * 299.99710 * 16 14 5 37 37 H 1.08998 * 109.47271 * 59.99845 * 18 17 16 38 38 H 1.09001 * 109.47214 * 299.99612 * 18 17 16 39 39 H 1.08994 * 109.47042 * 305.00081 * 19 18 17 40 40 H 1.09004 * 109.47130 * 184.99818 * 19 18 17 41 41 H 1.08007 * 120.02224 * 359.69822 * 22 21 20 42 42 H 1.08005 * 119.97301 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.94614 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.97071 * 180.02562 * 25 24 23 45 45 H 1.08006 * 120.02543 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2072 -0.7864 -1.3021 7 1 3.8795 -1.3581 -2.1578 8 6 4.8626 -1.4198 -0.2531 9 7 5.5676 -0.7144 0.6026 10 14 4.7413 -3.2737 -0.0594 11 1 5.2845 -3.9348 -1.2732 12 1 5.5236 -3.6995 1.1288 13 1 3.3189 -3.6606 0.1203 14 6 4.1560 1.3206 -2.3517 15 8 3.9517 2.5153 -2.3064 16 6 4.6094 0.6819 -3.6391 17 8 4.7252 1.6829 -4.6524 18 6 5.1520 1.1800 -5.9201 19 6 5.2398 2.3325 -6.9226 20 8 6.2625 3.2429 -6.5133 21 6 6.4710 4.3309 -7.3005 22 6 7.4477 5.2563 -6.9624 23 6 7.6581 6.3611 -7.7644 24 6 6.8959 6.5455 -8.9031 25 6 5.9219 5.6245 -9.2425 26 6 5.7077 4.5180 -8.4437 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8507 0.5687 0.8428 33 1 3.9784 2.1767 0.0902 34 1 6.0248 -1.1564 1.3350 35 1 3.8805 -0.0666 -3.9499 36 1 5.5776 0.2049 -3.4869 37 1 4.4349 0.4413 -6.2781 38 1 6.1318 0.7140 -5.8149 39 1 4.2835 2.8538 -6.9615 40 1 5.4789 1.9376 -7.9101 41 1 8.0401 5.1152 -6.0703 42 1 8.4181 7.0820 -7.5014 43 1 7.0616 7.4101 -9.5287 44 1 5.3281 5.7705 -10.1327 45 1 4.9465 3.7992 -8.7090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457183412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = -145.970527 kcal Electronic energy + Delta-G solvation = -26972.519549 eV Core-core repulsion = 22955.669447 eV Total energy + Delta-G solvation = -4016.850102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06063 -40.62383 -38.99939 -38.47669 -37.85371 -36.53706 -33.54483 -32.39125 -31.77725 -31.23307 -30.14446 -28.17465 -27.24795 -26.37091 -24.65371 -23.56685 -23.33956 -22.40431 -21.06595 -19.34513 -18.97474 -18.23601 -17.55416 -17.42860 -17.16006 -16.86424 -16.68733 -16.63034 -16.35500 -16.14855 -15.89127 -15.62050 -15.38643 -14.96234 -14.85602 -14.33559 -14.16713 -13.79122 -13.61805 -13.44672 -13.23012 -13.12033 -12.85857 -12.75628 -12.55685 -12.51597 -12.44462 -12.30015 -12.08826 -11.89531 -11.81245 -11.68621 -10.99418 -10.64193 -10.55937 -10.31542 -9.94146 -9.43573 -9.14594 -8.26760 -6.05923 0.40554 0.51498 1.45764 1.53193 1.60543 1.96743 2.22159 2.25975 2.46706 2.86672 2.97683 3.12349 3.33948 3.82999 3.97424 4.05244 4.10980 4.17215 4.23173 4.27360 4.33248 4.37029 4.40506 4.45349 4.50497 4.51571 4.54354 4.56123 4.60956 4.62653 4.69454 4.78133 4.81136 4.86134 5.10051 5.29011 5.39129 5.49102 5.49268 5.60749 5.90055 6.01354 6.15332 6.38817 6.43390 6.50915 7.16387 7.56968 7.99988 8.78134 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002555 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.087056 B =10955.727707 C =11567.551000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.121 3.879 5 N -0.436 5.436 6 C -0.344 4.344 7 H 0.095 0.905 8 C 0.009 3.991 9 N -0.897 5.897 10 Si 0.983 3.017 11 H -0.259 1.259 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.457 3.543 15 O -0.627 6.627 16 C 0.078 3.922 17 O -0.395 6.395 18 C 0.052 3.948 19 C 0.063 3.937 20 O -0.336 6.336 21 C 0.106 3.894 22 C -0.182 4.182 23 C -0.084 4.084 24 C -0.165 4.165 25 C -0.083 4.083 26 C -0.220 4.220 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 4.184 -15.938 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.003 4.003 5 N -0.155 5.155 6 C -0.471 4.471 7 H 0.112 0.888 8 C -0.194 4.194 9 N -0.534 5.534 10 Si 0.806 3.194 11 H -0.183 1.183 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.246 3.754 15 O -0.515 6.515 16 C -0.001 4.001 17 O -0.314 6.314 18 C -0.024 4.024 19 C -0.011 4.011 20 O -0.250 6.250 21 C 0.061 3.939 22 C -0.200 4.200 23 C -0.101 4.101 24 C -0.183 4.183 25 C -0.101 4.101 26 C -0.239 4.239 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.168 0.832 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.910 4.685 -15.512 16.316 hybrid contribution -0.162 -0.825 0.601 1.033 sum -2.071 3.860 -14.911 15.541 Atomic orbital electron populations 1.22900 0.80561 1.03432 1.00257 1.88055 1.20529 1.27570 1.95317 1.22793 0.94289 0.84722 0.99503 1.21297 0.91503 0.97523 0.89976 1.43413 1.56840 1.07642 1.07608 1.19534 1.37175 0.82087 1.08351 0.88785 1.26194 0.92873 1.04154 0.96152 1.70032 1.28266 1.38680 1.16378 0.85162 0.78382 0.77702 0.78118 1.18334 1.21195 1.19556 1.20860 0.80818 0.86266 0.87424 1.90501 1.57746 1.16733 1.86515 1.21850 1.01839 0.90034 0.86356 1.87997 1.88879 1.34481 1.20017 1.22879 1.00828 0.95653 0.83088 1.23049 0.90485 0.89517 0.98070 1.86162 1.55327 1.33167 1.50381 1.19449 0.95744 0.87834 0.90919 1.20729 1.00490 0.96028 1.02796 1.21286 0.99173 0.95740 0.93943 1.21448 0.97447 1.01145 0.98258 1.21349 0.97043 0.92571 0.99151 1.21531 1.03332 1.02526 0.96464 0.94293 0.88597 0.92984 0.91395 0.95128 0.89158 0.92812 0.91950 0.89428 0.90519 0.87946 0.91838 0.91265 0.86988 0.86228 0.83226 0.83131 0.82987 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.63 10.44 -148.98 -1.56 -18.19 16 3 C 0.06 2.75 6.24 71.98 0.45 3.20 16 4 C 0.12 6.07 5.26 86.38 0.45 6.52 16 5 N -0.44 -22.83 2.45 -635.53 -1.56 -24.39 16 6 C -0.34 -17.50 8.29 84.04 0.70 -16.80 16 7 H 0.09 4.47 7.21 -2.91 -0.02 4.45 16 8 C 0.01 0.48 4.95 84.93 0.42 0.90 16 9 N -0.90 -48.46 11.66 21.67 0.25 -48.21 16 10 Si 0.98 39.87 29.59 68.60 2.03 41.90 16 11 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 12 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 14 C 0.46 24.00 7.67 87.65 0.67 24.67 16 15 O -0.63 -36.75 16.17 15.98 0.26 -36.49 16 16 C 0.08 3.34 5.15 71.23 0.37 3.70 16 17 O -0.39 -16.35 9.84 -125.55 -1.24 -17.59 16 18 C 0.05 1.45 6.32 71.98 0.45 1.91 16 19 C 0.06 1.59 5.12 71.98 0.37 1.96 16 20 O -0.34 -11.04 10.10 -87.79 -0.89 -11.93 16 21 C 0.11 3.03 6.69 22.51 0.15 3.18 16 22 C -0.18 -4.91 9.99 22.37 0.22 -4.69 16 23 C -0.08 -1.70 10.04 22.25 0.22 -1.48 16 24 C -0.17 -2.86 10.04 22.28 0.22 -2.63 16 25 C -0.08 -1.49 10.04 22.25 0.22 -1.27 16 26 C -0.22 -4.91 9.04 22.36 0.20 -4.71 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 4.81 5.81 -2.39 -0.01 4.79 16 33 H 0.05 2.80 7.59 -2.38 -0.02 2.78 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.09 3.26 7.71 -2.38 -0.02 3.25 16 36 H 0.08 3.22 8.10 -2.39 -0.02 3.20 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.73 7.66 -2.39 -0.02 1.71 16 40 H 0.11 1.90 7.66 -2.38 -0.02 1.89 16 41 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 45 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 Total: -1.00 -74.26 383.00 4.66 -69.60 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.98 Total: 28.84 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 6.38 Total: 16.46 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.31 Total: -72.60 kcal Atomic # 8 Polarization: -80.78 SS G_CDS: -3.42 Total: -84.20 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -74.26 4.66 -69.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.370 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds