Wall clock time and date at job start Tue Mar 31 2020 14:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00065 * 2 1 4 4 C 1.52996 * 109.47443 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47464 * 64.99630 * 4 3 2 6 6 C 1.35707 * 117.00010 * 180.02562 * 5 4 3 7 7 C 1.39012 * 119.90837 * 0.29555 * 6 5 4 8 8 C 1.37687 * 120.09426 * 180.26002 * 7 6 5 9 9 C 1.39800 * 119.90463 * 359.44343 * 8 7 6 10 10 C 1.47496 * 120.09635 * 180.29689 * 9 8 7 11 11 O 1.21624 * 119.99912 * 331.31746 * 10 9 8 12 12 N 1.34772 * 120.00196 * 151.30947 * 10 9 8 13 13 C 1.36897 * 120.00353 * 186.87011 * 12 10 9 14 14 H 1.07997 * 120.00401 * 216.79713 * 13 12 10 15 15 C 1.39026 * 119.99995 * 36.79037 * 13 12 10 16 16 N 1.31382 * 119.99596 * 25.80680 * 15 13 12 17 17 Si 1.86797 * 120.00405 * 205.80337 * 15 13 12 18 18 H 1.48502 * 109.46940 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47012 * 120.00317 * 17 15 13 20 20 H 1.48500 * 109.47129 * 240.00165 * 17 15 13 21 21 C 1.46500 * 119.99966 * 6.87852 * 12 10 9 22 22 C 1.53005 * 109.47386 * 99.24000 * 21 12 10 23 23 O 1.42899 * 109.46684 * 65.00099 * 22 21 12 24 24 C 1.42898 * 114.00049 * 179.97438 * 23 22 21 25 25 C 1.39802 * 119.81459 * 0.28472 * 9 8 7 26 26 C 1.37693 * 119.90141 * 359.97438 * 25 9 8 27 27 H 1.08994 * 109.46770 * 60.00643 * 1 2 3 28 28 H 1.09006 * 109.46850 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47248 * 300.00024 * 1 2 3 30 30 H 1.09001 * 109.47494 * 59.99734 * 3 2 1 31 31 H 1.09000 * 109.46921 * 299.99666 * 3 2 1 32 32 H 1.09002 * 109.46898 * 304.99605 * 4 3 2 33 33 H 1.09001 * 109.47235 * 184.99773 * 4 3 2 34 34 H 1.07999 * 119.95429 * 359.97438 * 7 6 5 35 35 H 1.08004 * 120.05111 * 179.71822 * 8 7 6 36 36 H 0.96997 * 120.00388 * 184.98771 * 16 15 13 37 37 H 1.08997 * 109.47079 * 219.24338 * 21 12 10 38 38 H 1.09004 * 109.47127 * 339.24817 * 21 12 10 39 39 H 1.08992 * 109.47385 * 184.99917 * 22 21 12 40 40 H 1.08996 * 109.46993 * 305.00527 * 22 21 12 41 41 H 1.08999 * 109.47042 * 59.99849 * 24 23 22 42 42 H 1.09002 * 109.47468 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47456 * 300.00303 * 24 23 22 44 44 H 1.07997 * 120.04811 * 180.02562 * 25 9 8 45 45 H 1.07998 * 119.94904 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3001 0.3981 -1.3833 7 6 6.1792 0.7903 -0.3804 8 6 7.5349 0.6128 -0.5424 9 6 8.0262 0.0267 -1.7127 10 6 9.4772 -0.1714 -1.8878 11 8 10.2637 0.5796 -1.3431 12 7 9.9317 -1.1847 -2.6514 13 6 11.2726 -1.4557 -2.7020 14 1 11.7243 -1.7763 -3.6291 15 6 12.0531 -1.3181 -1.5597 16 7 11.5044 -1.4326 -0.3715 17 14 13.8820 -0.9706 -1.7143 18 1 14.2503 -0.8875 -3.1505 19 1 14.1992 0.3175 -1.0470 20 1 14.6502 -2.0651 -1.0683 21 6 8.9907 -1.9961 -3.4276 22 6 8.9782 -1.5136 -4.8795 23 8 10.2576 -1.7493 -5.4708 24 6 10.3533 -1.3329 -6.8344 25 6 7.1382 -0.3715 -2.7164 26 6 5.7843 -0.1854 -2.5485 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 5.7985 1.2390 0.5252 35 1 8.2176 0.9219 0.2353 36 1 12.0324 -1.2655 0.4248 37 1 9.2990 -3.0411 -3.3946 38 1 7.9912 -1.8985 -3.0037 39 1 8.2150 -2.0571 -5.4364 40 1 8.7567 -0.4467 -4.9059 41 1 10.1601 -0.2623 -6.9018 42 1 11.3543 -1.5454 -7.2098 43 1 9.6186 -1.8730 -7.4316 44 1 7.5136 -0.8250 -3.6218 45 1 5.0976 -0.4930 -3.3232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457185918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:54 Heat of formation + Delta-G solvation = -82.519525 kcal Electronic energy + Delta-G solvation = -27668.077914 eV Core-core repulsion = 23653.979254 eV Total energy + Delta-G solvation = -4014.098660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12718 -38.97425 -37.96961 -37.17751 -36.31986 -34.28036 -32.22171 -31.26285 -30.45958 -29.13069 -28.90699 -26.63803 -25.97765 -24.77618 -23.72389 -22.67213 -21.96969 -21.37883 -19.52843 -18.18638 -17.09266 -17.00431 -16.31919 -16.13575 -15.95466 -15.74235 -15.24934 -15.18369 -14.88588 -14.61255 -14.34222 -14.15109 -13.78951 -13.31604 -13.22606 -13.19252 -12.78905 -12.51531 -12.36336 -12.15435 -11.84162 -11.58925 -11.51797 -11.35041 -11.24336 -10.89607 -10.85564 -10.77036 -10.59238 -10.29765 -10.19623 -10.01739 -9.94005 -9.18471 -8.68436 -8.58277 -8.10306 -7.70645 -7.08703 -6.06428 -3.65609 1.58171 1.74080 3.20073 3.40566 3.43062 3.51356 3.53627 3.87537 4.27482 4.37557 4.62358 4.74817 4.82234 4.94100 4.98949 5.00416 5.06958 5.10350 5.19478 5.21838 5.36443 5.37352 5.39375 5.51723 5.54231 5.65071 5.70163 5.74036 5.75991 5.90217 5.96548 5.99132 6.06081 6.10565 6.39676 6.60224 6.65294 6.73552 6.80096 7.00182 7.04294 7.61563 7.67304 7.83420 8.37485 9.10999 9.30059 9.74659 10.35625 11.02094 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.003091 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.935815 B = 9056.107317 C =10317.773096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.310 6.310 6 C 0.123 3.877 7 C -0.215 4.215 8 C -0.034 4.034 9 C -0.125 4.125 10 C 0.502 3.498 11 O -0.543 6.543 12 N -0.431 5.431 13 C -0.328 4.328 14 H 0.096 0.904 15 C 0.069 3.931 16 N -0.827 5.827 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.289 1.289 21 C 0.065 3.935 22 C 0.044 3.956 23 O -0.362 6.362 24 C 0.030 3.970 25 C -0.102 4.102 26 C -0.159 4.159 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.263 0.737 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.158 0.842 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.095 3.268 -3.329 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.224 6.224 6 C 0.077 3.923 7 C -0.234 4.234 8 C -0.053 4.053 9 C -0.129 4.129 10 C 0.291 3.709 11 O -0.424 6.424 12 N -0.150 5.150 13 C -0.454 4.454 14 H 0.113 0.887 15 C -0.141 4.141 16 N -0.462 5.462 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.215 1.215 21 C -0.059 4.059 22 C -0.034 4.034 23 O -0.281 6.281 24 C -0.067 4.067 25 C -0.120 4.120 26 C -0.177 4.177 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.175 0.825 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.513 3.269 -2.885 19.020 hybrid contribution 0.400 0.634 0.133 0.761 sum -18.113 3.903 -2.751 18.732 Atomic orbital electron populations 1.22756 0.80995 1.02963 0.99852 1.87994 1.19666 1.27156 1.95379 1.22583 0.91819 0.85689 1.01229 1.22793 0.93312 0.98385 0.87055 1.86027 1.20622 1.77073 1.38638 1.19102 0.81761 0.96577 0.94811 1.21107 0.94076 1.08492 0.99714 1.21030 0.93910 0.93851 0.96519 1.20475 0.95713 1.01461 0.95256 1.17610 0.85752 0.82727 0.84811 1.90590 1.56653 1.45498 1.49616 1.43165 1.06041 1.24999 1.40801 1.19307 0.81694 1.48719 0.95709 0.88660 1.25121 0.99318 0.95133 0.94492 1.69950 1.38321 1.40094 0.97793 0.86289 0.84407 0.77860 0.78370 1.19472 1.20808 1.21531 1.22553 0.96451 0.97402 0.89472 1.23123 0.85570 0.99322 0.95355 1.88132 1.32266 1.83324 1.24333 1.22686 1.01640 0.98286 0.84087 1.22203 0.92054 0.97219 1.00496 1.20297 0.95444 1.05056 0.96927 0.93982 0.89495 0.94156 0.91249 0.92138 0.91045 0.90448 0.85831 0.85048 0.92686 0.90755 0.87569 0.93609 0.93406 0.94621 0.90133 0.94970 0.82549 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.21 10.67 -40.08 -0.43 -4.63 16 3 C 0.06 0.56 6.32 37.16 0.23 0.79 16 4 C 0.06 0.63 5.12 37.16 0.19 0.82 16 5 O -0.31 -4.40 10.09 -23.67 -0.24 -4.64 16 6 C 0.12 1.94 6.70 -39.01 -0.26 1.68 16 7 C -0.22 -3.47 9.01 -39.50 -0.36 -3.83 16 8 C -0.03 -0.67 9.59 -39.20 -0.38 -1.04 16 9 C -0.13 -2.69 5.63 -104.96 -0.59 -3.29 16 10 C 0.50 13.30 6.65 -12.49 -0.08 13.22 16 11 O -0.54 -16.58 14.42 5.26 0.08 -16.51 16 12 N -0.43 -11.07 2.57 -116.00 -0.30 -11.37 16 13 C -0.33 -9.29 8.83 -15.00 -0.13 -9.42 16 14 H 0.10 2.67 6.69 -52.49 -0.35 2.32 16 15 C 0.07 2.02 4.12 -17.45 -0.07 1.94 16 16 N -0.83 -25.09 11.85 55.50 0.66 -24.43 16 17 Si 0.90 22.76 29.63 -169.99 -5.04 17.73 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C 0.07 1.31 5.32 -4.04 -0.02 1.29 16 22 C 0.04 0.76 5.08 37.16 0.19 0.95 16 23 O -0.36 -6.92 8.97 -35.23 -0.32 -7.24 16 24 C 0.03 0.43 11.01 101.05 1.11 1.54 16 25 C -0.10 -1.79 7.52 -39.20 -0.29 -2.08 16 26 C -0.16 -2.49 9.97 -39.49 -0.39 -2.88 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.76 7.64 -51.93 -0.40 0.36 16 33 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16 34 H 0.12 1.62 6.28 -52.49 -0.33 1.29 16 35 H 0.13 2.72 7.90 -52.48 -0.41 2.30 16 36 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 37 H 0.07 1.51 8.11 -51.93 -0.42 1.09 16 38 H 0.11 1.92 3.83 -55.27 -0.21 1.71 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.82 7.41 -51.93 -0.38 0.44 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.16 2.53 2.69 -52.49 -0.14 2.39 16 45 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -36.67 369.25 -6.17 -42.84 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.41 Total: 1.67 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 0.26 Total: 1.02 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.36 Total: -35.80 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.91 Total: -33.02 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.04 Total: 17.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.67 -6.17 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.678 kcal (2) G-P(sol) polarization free energy of solvation -36.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds