Wall clock time and date at job start Tue Mar 31 2020 14:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00065 * 2 1 4 4 C 1.52996 * 109.47443 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47464 * 64.99630 * 4 3 2 6 6 C 1.35707 * 117.00010 * 180.02562 * 5 4 3 7 7 C 1.39012 * 119.90837 * 0.29555 * 6 5 4 8 8 C 1.37687 * 120.09426 * 180.26002 * 7 6 5 9 9 C 1.39800 * 119.90463 * 359.44343 * 8 7 6 10 10 C 1.47496 * 120.09635 * 180.29689 * 9 8 7 11 11 O 1.21624 * 119.99912 * 331.31746 * 10 9 8 12 12 N 1.34772 * 120.00196 * 151.30947 * 10 9 8 13 13 C 1.36897 * 120.00353 * 186.87011 * 12 10 9 14 14 H 1.07997 * 120.00401 * 216.79713 * 13 12 10 15 15 C 1.39026 * 119.99995 * 36.79037 * 13 12 10 16 16 N 1.31382 * 119.99596 * 25.80680 * 15 13 12 17 17 Si 1.86797 * 120.00405 * 205.80337 * 15 13 12 18 18 H 1.48502 * 109.46940 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47012 * 120.00317 * 17 15 13 20 20 H 1.48500 * 109.47129 * 240.00165 * 17 15 13 21 21 C 1.46500 * 119.99966 * 6.87852 * 12 10 9 22 22 C 1.53005 * 109.47386 * 99.24000 * 21 12 10 23 23 O 1.42899 * 109.46684 * 65.00099 * 22 21 12 24 24 C 1.42898 * 114.00049 * 179.97438 * 23 22 21 25 25 C 1.39802 * 119.81459 * 0.28472 * 9 8 7 26 26 C 1.37693 * 119.90141 * 359.97438 * 25 9 8 27 27 H 1.08994 * 109.46770 * 60.00643 * 1 2 3 28 28 H 1.09006 * 109.46850 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47248 * 300.00024 * 1 2 3 30 30 H 1.09001 * 109.47494 * 59.99734 * 3 2 1 31 31 H 1.09000 * 109.46921 * 299.99666 * 3 2 1 32 32 H 1.09002 * 109.46898 * 304.99605 * 4 3 2 33 33 H 1.09001 * 109.47235 * 184.99773 * 4 3 2 34 34 H 1.07999 * 119.95429 * 359.97438 * 7 6 5 35 35 H 1.08004 * 120.05111 * 179.71822 * 8 7 6 36 36 H 0.96997 * 120.00388 * 184.98771 * 16 15 13 37 37 H 1.08997 * 109.47079 * 219.24338 * 21 12 10 38 38 H 1.09004 * 109.47127 * 339.24817 * 21 12 10 39 39 H 1.08992 * 109.47385 * 184.99917 * 22 21 12 40 40 H 1.08996 * 109.46993 * 305.00527 * 22 21 12 41 41 H 1.08999 * 109.47042 * 59.99849 * 24 23 22 42 42 H 1.09002 * 109.47468 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47456 * 300.00303 * 24 23 22 44 44 H 1.07997 * 120.04811 * 180.02562 * 25 9 8 45 45 H 1.07998 * 119.94904 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3001 0.3981 -1.3833 7 6 6.1792 0.7903 -0.3804 8 6 7.5349 0.6128 -0.5424 9 6 8.0262 0.0267 -1.7127 10 6 9.4772 -0.1714 -1.8878 11 8 10.2637 0.5796 -1.3431 12 7 9.9317 -1.1847 -2.6514 13 6 11.2726 -1.4557 -2.7020 14 1 11.7243 -1.7763 -3.6291 15 6 12.0531 -1.3181 -1.5597 16 7 11.5044 -1.4326 -0.3715 17 14 13.8820 -0.9706 -1.7143 18 1 14.2503 -0.8875 -3.1505 19 1 14.1992 0.3175 -1.0470 20 1 14.6502 -2.0651 -1.0683 21 6 8.9907 -1.9961 -3.4276 22 6 8.9782 -1.5136 -4.8795 23 8 10.2576 -1.7493 -5.4708 24 6 10.3533 -1.3329 -6.8344 25 6 7.1382 -0.3715 -2.7164 26 6 5.7843 -0.1854 -2.5485 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 5.7985 1.2390 0.5252 35 1 8.2176 0.9219 0.2353 36 1 12.0324 -1.2655 0.4248 37 1 9.2990 -3.0411 -3.3946 38 1 7.9912 -1.8985 -3.0037 39 1 8.2150 -2.0571 -5.4364 40 1 8.7567 -0.4467 -4.9059 41 1 10.1601 -0.2623 -6.9018 42 1 11.3543 -1.5454 -7.2098 43 1 9.6186 -1.8730 -7.4316 44 1 7.5136 -0.8250 -3.6218 45 1 5.0976 -0.4930 -3.3232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457185918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:53 Heat of formation + Delta-G solvation = -108.696672 kcal Electronic energy + Delta-G solvation = -27669.213040 eV Core-core repulsion = 23653.979254 eV Total energy + Delta-G solvation = -4015.233786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.51298 -40.41208 -38.83845 -38.56307 -37.74293 -36.15935 -34.19202 -32.36303 -31.83835 -30.47925 -30.42726 -27.29092 -27.24140 -26.63202 -24.73113 -24.24275 -23.41032 -22.57807 -21.30146 -19.37421 -18.82588 -17.98794 -17.78892 -17.45072 -17.15297 -16.66604 -16.54630 -16.42128 -16.18900 -15.94175 -15.90412 -15.63987 -15.27571 -15.05316 -14.66367 -14.51378 -13.95940 -13.77853 -13.50080 -13.48005 -13.20459 -12.99729 -12.80585 -12.75016 -12.67486 -12.53964 -12.28372 -12.19895 -12.07151 -11.99970 -11.69794 -11.48806 -10.79712 -10.63479 -10.44329 -10.13638 -9.94225 -9.16580 -9.11084 -8.22114 -5.84782 0.14949 0.36267 1.36640 1.44525 1.53462 2.17570 2.26769 2.41400 2.82806 2.90710 2.99767 3.23070 3.35625 3.78792 3.86240 3.97984 4.06472 4.13582 4.26085 4.28930 4.34266 4.38087 4.39770 4.50148 4.54242 4.54959 4.57201 4.58144 4.62790 4.64008 4.67463 4.76234 4.89952 4.90634 5.04766 5.08393 5.22128 5.32005 5.54219 5.63191 5.67449 6.21666 6.27581 6.43204 6.44216 7.02385 7.25353 7.70487 8.34455 8.86160 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.003091 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.935815 B = 9056.107317 C =10317.773096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.063 3.937 4 C 0.047 3.953 5 O -0.313 6.313 6 C 0.138 3.862 7 C -0.206 4.206 8 C -0.050 4.050 9 C -0.163 4.163 10 C 0.494 3.506 11 O -0.601 6.601 12 N -0.447 5.447 13 C -0.340 4.340 14 H 0.092 0.908 15 C 0.018 3.982 16 N -0.867 5.867 17 Si 0.961 3.039 18 H -0.259 1.259 19 H -0.296 1.296 20 H -0.275 1.275 21 C 0.061 3.939 22 C 0.049 3.951 23 O -0.403 6.403 24 C 0.025 3.975 25 C -0.091 4.091 26 C -0.151 4.151 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.172 0.828 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.365 3.421 -4.829 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.013 4.013 4 C -0.028 4.028 5 O -0.226 6.226 6 C 0.092 3.908 7 C -0.225 4.225 8 C -0.069 4.069 9 C -0.167 4.167 10 C 0.285 3.715 11 O -0.485 6.485 12 N -0.165 5.165 13 C -0.467 4.467 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.503 5.503 17 Si 0.786 3.214 18 H -0.183 1.183 19 H -0.223 1.223 20 H -0.200 1.200 21 C -0.062 4.062 22 C -0.028 4.028 23 O -0.323 6.323 24 C -0.071 4.071 25 C -0.108 4.108 26 C -0.170 4.170 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.189 0.811 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.819 3.391 -4.427 22.520 hybrid contribution 1.136 0.639 0.568 1.422 sum -20.683 4.030 -3.858 21.422 Atomic orbital electron populations 1.22918 0.79328 1.03708 1.01063 1.87935 1.21639 1.28516 1.95675 1.22715 0.90294 0.85316 1.03005 1.23202 0.94927 0.99204 0.85475 1.86054 1.19092 1.76961 1.40526 1.19244 0.82626 0.94704 0.94272 1.21274 0.92313 1.07773 1.01117 1.20944 0.95344 0.94811 0.95823 1.20189 0.93385 1.05310 0.97802 1.18433 0.87749 0.81927 0.83440 1.90522 1.58806 1.47546 1.51622 1.43358 1.06217 1.25565 1.41401 1.19462 0.83636 1.48313 0.95301 0.89002 1.25944 1.03158 0.95259 0.94392 1.70038 1.39623 1.42454 0.98203 0.85412 0.80136 0.77170 0.78701 1.18275 1.22294 1.20048 1.22823 0.96201 0.96193 0.90953 1.23077 0.86346 0.99758 0.93654 1.88061 1.33471 1.83864 1.26878 1.22882 1.03100 0.98870 0.82240 1.22222 0.92401 0.96479 0.99739 1.20628 0.94866 1.03777 0.97703 0.93130 0.89134 0.92543 0.88341 0.91406 0.91082 0.88280 0.82820 0.87500 0.93316 0.91631 0.85460 0.88772 0.93599 0.94347 0.89572 0.91947 0.81094 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.01 10.67 -144.34 -1.54 -9.55 16 3 C 0.06 0.88 6.32 71.98 0.45 1.33 16 4 C 0.05 0.82 5.12 71.98 0.37 1.19 16 5 O -0.31 -7.72 10.09 -85.64 -0.86 -8.59 16 6 C 0.14 3.92 6.70 22.64 0.15 4.07 16 7 C -0.21 -6.31 9.01 22.32 0.20 -6.11 16 8 C -0.05 -2.01 9.59 22.52 0.22 -1.79 16 9 C -0.16 -7.15 5.63 -20.08 -0.11 -7.26 16 10 C 0.49 27.33 6.65 86.68 0.58 27.90 16 11 O -0.60 -38.91 14.42 -4.11 -0.06 -38.97 16 12 N -0.45 -23.68 2.57 -639.18 -1.64 -25.32 16 13 C -0.34 -19.95 8.83 84.09 0.74 -19.20 16 14 H 0.09 5.31 6.69 -2.91 -0.02 5.29 16 15 C 0.02 1.09 4.12 84.95 0.35 1.44 16 16 N -0.87 -55.34 11.85 21.68 0.26 -55.08 16 17 Si 0.96 48.62 29.63 68.60 2.03 50.65 16 18 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 20 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 21 C 0.06 2.42 5.32 86.38 0.46 2.88 16 22 C 0.05 1.58 5.08 71.98 0.37 1.95 16 23 O -0.40 -15.00 8.97 -148.98 -1.34 -16.34 16 24 C 0.03 0.67 11.01 113.37 1.25 1.92 16 25 C -0.09 -3.03 7.52 22.52 0.17 -2.87 16 26 C -0.15 -4.23 9.97 22.33 0.22 -4.01 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.28 7.64 -2.39 -0.02 1.27 16 33 H 0.10 1.34 7.67 -2.39 -0.02 1.32 16 34 H 0.15 3.65 6.28 -2.91 -0.02 3.63 16 35 H 0.11 4.74 7.90 -2.91 -0.02 4.72 16 36 H 0.26 15.88 8.32 -92.71 -0.77 15.11 16 37 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 38 H 0.13 4.45 3.83 -5.52 -0.02 4.43 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 1.50 7.41 -2.39 -0.02 1.48 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.17 5.13 2.69 -2.91 -0.01 5.12 16 45 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -85.31 369.25 4.50 -80.81 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.99 Total: 19.39 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.66 Total: 2.99 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.39 Total: -80.40 kcal Atomic # 8 Polarization: -69.65 SS G_CDS: -3.80 Total: -73.45 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -85.31 4.50 -80.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.886 kcal (2) G-P(sol) polarization free energy of solvation -85.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds