Wall clock time and date at job start Tue Mar 31 2020 13:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46945 * 2 1 4 4 C 1.35995 * 116.99984 * 179.97438 * 3 2 1 5 5 C 1.38569 * 120.07310 * 359.96339 * 4 3 2 6 6 C 1.38233 * 119.99885 * 180.02562 * 5 4 3 7 7 C 1.38250 * 120.15015 * 359.97438 * 6 5 4 8 8 C 1.38248 * 120.14593 * 0.02562 * 7 6 5 9 9 C 1.38564 * 119.99392 * 359.97438 * 8 7 6 10 10 O 1.35994 * 120.06696 * 180.02562 * 9 8 7 11 11 C 1.42901 * 117.00404 * 5.59306 * 10 9 8 12 12 C 1.50701 * 109.47423 * 181.90748 * 11 10 9 13 13 O 1.21301 * 119.99861 * 0.57185 * 12 11 10 14 14 N 1.34769 * 120.00137 * 180.57389 * 12 11 10 15 15 C 1.37095 * 120.00039 * 355.09129 * 14 12 11 16 16 H 1.07999 * 120.00354 * 322.95189 * 15 14 12 17 17 C 1.38956 * 119.99770 * 142.94350 * 15 14 12 18 18 N 1.31407 * 120.00201 * 338.46098 * 17 15 14 19 19 Si 1.86804 * 119.99662 * 158.45871 * 17 15 14 20 20 H 1.48505 * 109.46981 * 60.00382 * 19 17 15 21 21 H 1.48500 * 109.46909 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47317 * 300.00249 * 19 17 15 23 23 C 1.46508 * 120.00086 * 175.09734 * 14 12 11 24 24 C 1.52995 * 109.47236 * 89.99674 * 23 14 12 25 25 O 1.42896 * 109.47055 * 65.00129 * 24 23 14 26 26 C 1.42899 * 114.00141 * 179.97438 * 25 24 23 27 27 H 1.09006 * 109.46887 * 299.99389 * 1 2 3 28 28 H 1.08997 * 109.47101 * 59.99600 * 1 2 3 29 29 H 1.08997 * 109.46648 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46942 * 240.00289 * 2 1 3 31 31 H 1.08997 * 109.47101 * 120.00400 * 2 1 3 32 32 H 1.08001 * 119.99826 * 0.03615 * 5 4 3 33 33 H 1.08003 * 119.92367 * 180.27435 * 6 5 4 34 34 H 1.07996 * 119.92994 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.00096 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.46893 * 301.90734 * 11 10 9 37 37 H 1.08994 * 109.47116 * 61.90243 * 11 10 9 38 38 H 0.97002 * 119.99816 * 185.06071 * 18 17 15 39 39 H 1.09005 * 109.46740 * 209.99996 * 23 14 12 40 40 H 1.08998 * 109.46785 * 329.99551 * 23 14 12 41 41 H 1.08995 * 109.47032 * 184.99821 * 24 23 14 42 42 H 1.09002 * 109.47372 * 305.00139 * 24 23 14 43 43 H 1.09002 * 109.47363 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47051 * 300.00033 * 26 25 24 45 45 H 1.09004 * 109.47167 * 59.99784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.2001 0.4277 0.0018 6 6 5.5703 0.6107 0.0029 7 6 6.1004 1.8875 0.0022 8 6 5.2624 2.9871 0.0009 9 6 3.8881 2.8107 -0.0002 10 8 3.0624 3.8913 -0.0020 11 6 3.6755 5.1761 -0.1267 12 6 2.6166 6.2464 -0.0625 13 8 1.4525 5.9398 0.0870 14 7 2.9629 7.5443 -0.1710 15 6 4.2859 7.8975 -0.2387 16 1 5.0188 7.3598 0.3444 17 6 4.6837 8.9471 -1.0577 18 7 3.9226 9.3227 -2.0609 19 14 6.3006 9.8244 -0.7325 20 1 7.4190 8.8519 -0.8268 21 1 6.4920 10.8988 -1.7395 22 1 6.2758 10.4200 0.6275 23 6 1.9256 8.5780 -0.2165 24 6 1.6092 9.0460 1.2053 25 8 2.7581 9.6877 1.7622 26 6 2.5679 10.1656 3.0955 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7886 -0.5708 0.0018 33 1 6.2282 -0.2458 -0.0006 34 1 7.1714 2.0263 0.0026 35 1 5.6790 3.9835 0.0008 36 1 4.3870 5.3196 0.6864 37 1 4.1976 5.2383 -1.0815 38 1 4.2331 10.0052 -2.6763 39 1 2.2804 9.4229 -0.8068 40 1 1.0246 8.1685 -0.6732 41 1 0.7770 9.7494 1.1795 42 1 1.3398 8.1866 1.8193 43 1 3.4847 10.6397 3.4458 44 1 1.7556 10.8923 3.1085 45 1 2.3180 9.3296 3.7489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457186774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:11 Heat of formation + Delta-G solvation = -116.128147 kcal Electronic energy + Delta-G solvation = -27782.299600 eV Core-core repulsion = 23766.743561 eV Total energy + Delta-G solvation = -4015.556039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31275 -38.88322 -37.95691 -36.95378 -36.41913 -34.63573 -31.88904 -31.61271 -30.18516 -29.91925 -29.01872 -27.05755 -25.74333 -24.66971 -23.94771 -22.18791 -22.00240 -21.12459 -19.14951 -18.50183 -17.31180 -16.96965 -16.15229 -16.06062 -15.74617 -15.57404 -15.22251 -15.14051 -14.70043 -14.54797 -14.36971 -14.24794 -14.02859 -13.47510 -13.39165 -12.82315 -12.74851 -12.58808 -12.16823 -11.97191 -11.88675 -11.82776 -11.48979 -11.16110 -11.15336 -11.04282 -10.99362 -10.84881 -10.70845 -10.66624 -10.40649 -10.38746 -10.06405 -9.14932 -8.95449 -8.59183 -8.42656 -7.56811 -7.51410 -6.36801 -4.04339 1.43125 1.61348 3.14955 3.24419 3.29193 3.31638 3.44069 3.82510 3.89733 4.16432 4.53880 4.79136 4.86165 4.89777 5.00989 5.07633 5.12737 5.16546 5.21278 5.46685 5.47844 5.62028 5.68187 5.74878 5.77627 5.81720 5.85786 5.91479 6.00122 6.04520 6.05149 6.11155 6.29251 6.32869 6.35144 6.41838 6.62171 6.69033 6.84258 7.25320 7.35961 7.45511 7.79991 7.91659 7.99511 8.34634 9.09383 9.46299 9.88369 10.66004 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003567 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.754189 B = 7846.803445 C = 9047.487229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.299 6.299 4 C 0.096 3.904 5 C -0.177 4.177 6 C -0.130 4.130 7 C -0.116 4.116 8 C -0.177 4.177 9 C 0.114 3.886 10 O -0.282 6.282 11 C 0.061 3.939 12 C 0.470 3.530 13 O -0.588 6.588 14 N -0.424 5.424 15 C -0.336 4.336 16 H 0.085 0.915 17 C 0.056 3.944 18 N -0.861 5.861 19 Si 0.917 3.083 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.269 1.269 23 C 0.116 3.884 24 C 0.053 3.947 25 O -0.363 6.363 26 C 0.031 3.969 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.271 0.729 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -11.796 4.410 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.213 6.213 4 C 0.051 3.949 5 C -0.196 4.196 6 C -0.148 4.148 7 C -0.134 4.134 8 C -0.196 4.196 9 C 0.067 3.933 10 O -0.194 6.194 11 C -0.016 4.016 12 C 0.258 3.742 13 O -0.473 6.473 14 N -0.143 5.143 15 C -0.463 4.463 16 H 0.103 0.897 17 C -0.150 4.150 18 N -0.497 5.497 19 Si 0.743 3.257 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.008 4.008 24 C -0.025 4.025 25 O -0.281 6.281 26 C -0.067 4.067 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.048 0.952 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.492 -11.547 4.264 12.319 hybrid contribution 1.036 0.428 0.346 1.173 sum 1.529 -11.119 4.610 12.134 Atomic orbital electron populations 1.21755 0.92869 1.02312 1.03963 1.22736 0.95994 0.82605 1.00769 1.86276 1.18108 1.28111 1.88840 1.18258 0.83130 0.91214 1.02334 1.20977 0.94101 0.97054 1.07480 1.20748 0.94097 0.97156 1.02806 1.20836 0.99533 0.91895 1.01166 1.21251 0.91332 1.00810 1.06217 1.18446 0.89248 0.85918 0.99694 1.86256 1.33382 1.12594 1.87187 1.22417 0.96002 0.80442 1.02784 1.19817 0.88305 0.83711 0.82335 1.90573 1.19630 1.82202 1.54903 1.43184 1.06545 1.02023 1.62583 1.19230 0.82917 1.18258 1.25916 0.89706 1.25269 0.98844 0.97382 0.93548 1.69813 1.37903 1.30172 1.11797 0.86176 0.81502 0.79323 0.78675 1.19998 1.21074 1.19444 1.21503 0.91659 0.94070 0.93526 1.23016 0.87419 0.94958 0.97113 1.88149 1.36405 1.76341 1.27165 1.22643 1.00911 0.97458 0.85652 0.91394 0.91355 0.90735 0.92422 0.92459 0.85279 0.86049 0.85799 0.84270 0.90505 0.89371 0.91830 0.86641 0.91029 0.94254 0.94074 0.90492 0.95203 0.94991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.05 0.63 5.46 37.16 0.20 0.84 16 3 O -0.30 -5.13 9.92 -34.23 -0.34 -5.47 16 4 C 0.10 1.62 6.70 -39.12 -0.26 1.35 16 5 C -0.18 -2.33 9.04 -39.46 -0.36 -2.69 16 6 C -0.13 -1.57 10.04 -39.58 -0.40 -1.96 16 7 C -0.12 -1.51 10.04 -39.57 -0.40 -1.91 16 8 C -0.18 -2.78 9.06 -39.46 -0.36 -3.14 16 9 C 0.11 2.11 6.69 -39.12 -0.26 1.85 16 10 O -0.28 -6.24 9.45 -47.35 -0.45 -6.69 16 11 C 0.06 1.32 4.01 36.01 0.14 1.47 16 12 C 0.47 11.95 7.70 -10.99 -0.08 11.86 16 13 O -0.59 -16.45 16.13 -14.37 -0.23 -16.68 16 14 N -0.42 -10.72 2.50 -114.81 -0.29 -11.01 16 15 C -0.34 -8.40 8.10 -14.93 -0.12 -8.52 16 16 H 0.09 2.02 7.11 -52.49 -0.37 1.65 16 17 C 0.06 1.40 4.96 -17.47 -0.09 1.32 16 18 N -0.86 -22.40 11.43 55.50 0.63 -21.77 16 19 Si 0.92 19.60 29.61 -169.99 -5.03 14.57 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C 0.12 2.78 5.40 -4.04 -0.02 2.76 16 24 C 0.05 1.11 6.28 37.16 0.23 1.35 16 25 O -0.36 -7.81 10.18 -35.23 -0.36 -8.17 16 26 C 0.03 0.50 11.01 101.05 1.11 1.61 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 31 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.14 2.08 6.29 -52.49 -0.33 1.75 16 36 H 0.08 1.51 6.73 -51.93 -0.35 1.16 16 37 H 0.09 1.83 7.99 -51.93 -0.41 1.42 16 38 H 0.27 6.70 8.32 -40.82 -0.34 6.37 16 39 H 0.12 2.94 5.49 -51.93 -0.29 2.66 16 40 H 0.07 1.73 7.49 -51.93 -0.39 1.34 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -32.11 377.61 -7.28 -39.39 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.63 Total: 5.11 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.27 Total: 5.02 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.35 Total: -32.77 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.38 Total: -37.01 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.11 -7.28 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.740 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds