Wall clock time and date at job start Tue Mar 31 2020 14:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00466 * 2 1 4 4 C 1.52998 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47117 * 65.00240 * 4 3 2 6 6 C 1.37093 * 119.99842 * 269.99984 * 5 4 3 7 7 H 1.07997 * 120.00297 * 140.61418 * 6 5 4 8 8 C 1.38954 * 120.00189 * 320.61742 * 6 5 4 9 9 N 1.31409 * 120.00354 * 159.11664 * 8 6 5 10 10 Si 1.86807 * 119.99770 * 339.10966 * 8 6 5 11 11 H 1.48500 * 109.46795 * 95.81477 * 10 8 6 12 12 H 1.48496 * 109.47289 * 215.81244 * 10 8 6 13 13 H 1.48495 * 109.47169 * 335.81738 * 10 8 6 14 14 C 1.34770 * 119.99791 * 89.99755 * 5 4 3 15 15 O 1.21294 * 120.00201 * 5.01582 * 14 5 4 16 16 C 1.50706 * 119.99636 * 185.00776 * 14 5 4 17 17 C 1.53005 * 109.47047 * 185.45662 * 16 14 5 18 18 O 1.42899 * 109.47066 * 178.63658 * 17 16 14 19 19 C 1.35995 * 116.99925 * 179.97438 * 18 17 16 20 20 C 1.38562 * 120.07237 * 0.28255 * 19 18 17 21 21 C 1.38244 * 120.00066 * 180.26958 * 20 19 18 22 22 C 1.38255 * 120.14208 * 359.72425 * 21 20 19 23 23 C 1.38235 * 120.14704 * 359.97438 * 22 21 20 24 24 C 1.38569 * 120.00231 * 0.02562 * 23 22 21 25 25 O 1.35993 * 120.07177 * 180.02562 * 24 23 22 26 26 C 1.42895 * 117.00397 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47248 * 299.99621 * 1 2 3 28 28 H 1.09005 * 109.47397 * 59.99603 * 1 2 3 29 29 H 1.08999 * 109.47957 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46868 * 60.00351 * 3 2 1 31 31 H 1.08996 * 109.47087 * 300.00567 * 3 2 1 32 32 H 1.09004 * 109.47342 * 305.00173 * 4 3 2 33 33 H 1.09001 * 109.47430 * 185.00231 * 4 3 2 34 34 H 0.97003 * 120.00263 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46866 * 65.45993 * 16 14 5 36 36 H 1.08993 * 109.47255 * 305.45445 * 16 14 5 37 37 H 1.08998 * 109.46736 * 58.63522 * 17 16 14 38 38 H 1.09005 * 109.47004 * 298.63686 * 17 16 14 39 39 H 1.08008 * 120.00339 * 359.97438 * 20 19 18 40 40 H 1.08001 * 119.92910 * 179.74804 * 21 20 19 41 41 H 1.08000 * 119.92332 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.99868 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.47085 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.47453 * 300.00294 * 26 25 24 45 45 H 1.08993 * 109.46917 * 60.00432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0968 -0.7987 -1.3371 7 1 3.7939 -1.3131 -2.2371 8 6 4.6091 -1.5183 -0.2645 9 7 4.3591 -2.8039 -0.1563 10 14 5.6535 -0.6583 1.0237 11 1 4.7988 -0.2678 2.1736 12 1 6.7211 -1.5788 1.4905 13 1 6.2705 0.5554 0.4309 14 6 4.2614 1.3336 -2.3218 15 8 4.2424 2.5423 -2.2216 16 6 4.6047 0.6922 -3.6416 17 6 5.0163 1.7737 -4.6425 18 8 5.3724 1.1628 -5.8843 19 6 5.7647 1.9905 -6.8895 20 6 5.8115 3.3599 -6.6830 21 6 6.2052 4.2003 -7.7076 22 6 6.5582 3.6773 -8.9377 23 6 6.5196 2.3117 -9.1484 24 6 6.1260 1.4636 -8.1257 25 8 6.0880 0.1199 -8.3312 26 6 6.4667 -0.3493 -9.6268 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5680 0.8409 33 1 3.9786 2.1763 0.0890 34 1 4.7165 -3.3062 0.5926 35 1 3.7350 0.1567 -4.0224 36 1 5.4295 -0.0067 -3.5022 37 1 5.8710 2.3251 -4.2506 38 1 4.1833 2.4588 -4.8002 39 1 5.5359 3.7710 -5.7230 40 1 6.2374 5.2678 -7.5466 41 1 6.8657 4.3371 -9.7356 42 1 6.7963 1.9056 -10.1102 43 1 6.3915 -1.4363 -9.6558 44 1 5.8032 0.0806 -10.3772 45 1 7.4937 -0.0501 -9.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457186776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:10 Heat of formation + Delta-G solvation = -110.985735 kcal Electronic energy + Delta-G solvation = -27436.045710 eV Core-core repulsion = 23420.712663 eV Total energy + Delta-G solvation = -4015.333047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45659 -39.11613 -38.29457 -37.10278 -36.74052 -34.85640 -32.00165 -31.68718 -30.31880 -29.85046 -28.95107 -27.24354 -25.88125 -25.01242 -24.02099 -22.38241 -22.25143 -21.17753 -19.02138 -18.56659 -17.31774 -16.86186 -16.36771 -16.23391 -16.14289 -15.80210 -15.41340 -15.37087 -14.79552 -14.73094 -14.61860 -14.46278 -14.09470 -13.85854 -13.57005 -12.91268 -12.85276 -12.54815 -12.44853 -12.17973 -11.92588 -11.78501 -11.62542 -11.51065 -11.25392 -11.17425 -11.13698 -10.91061 -10.78813 -10.68270 -10.30351 -10.09032 -9.91172 -9.19650 -9.07354 -8.75854 -8.62162 -7.79599 -7.75679 -6.39172 -3.99174 1.27161 1.44519 3.08234 3.24152 3.26316 3.29522 3.31295 3.64535 3.73090 4.18268 4.36181 4.48966 4.74404 4.89234 4.96891 5.05180 5.05792 5.10922 5.31854 5.38790 5.41852 5.47737 5.48721 5.59401 5.65307 5.68071 5.77230 5.81829 5.85095 5.93182 6.04820 6.10693 6.15776 6.25032 6.31886 6.40913 6.44305 6.47234 6.57983 6.68703 7.17420 7.36461 7.71910 7.80657 8.12011 8.29240 8.97811 9.35165 9.65130 10.71726 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.002984 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.341905 B = 9381.495497 C = 9845.659120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.055 3.945 4 C 0.100 3.900 5 N -0.451 5.451 6 C -0.335 4.335 7 H 0.104 0.896 8 C 0.077 3.923 9 N -0.854 5.854 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.483 3.517 15 O -0.608 6.608 16 C -0.116 4.116 17 C 0.076 3.924 18 O -0.304 6.304 19 C 0.114 3.886 20 C -0.175 4.175 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.176 4.176 24 C 0.093 3.907 25 O -0.304 6.304 26 C 0.028 3.972 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.273 0.727 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 8.497 -12.936 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.023 4.023 4 C -0.023 4.023 5 N -0.170 5.170 6 C -0.462 4.462 7 H 0.122 0.878 8 C -0.131 4.131 9 N -0.489 5.489 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.187 1.187 14 C 0.273 3.727 15 O -0.495 6.495 16 C -0.156 4.156 17 C 0.001 3.999 18 O -0.218 6.218 19 C 0.067 3.933 20 C -0.194 4.194 21 C -0.135 4.135 22 C -0.146 4.146 23 C -0.195 4.195 24 C 0.047 3.953 25 O -0.217 6.217 26 C -0.068 4.068 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.117 0.883 44 H 0.070 0.930 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.161 8.320 -12.611 15.153 hybrid contribution 0.274 0.632 0.679 0.967 sum 1.435 8.952 -11.932 14.985 Atomic orbital electron populations 1.22660 0.83060 1.02132 0.98670 1.88241 1.17635 1.26440 1.94981 1.22861 0.94895 0.85318 0.99177 1.21729 0.92221 0.99073 0.89270 1.43588 1.57162 1.07178 1.09068 1.18957 1.43380 0.78871 1.04964 0.87843 1.25222 0.95746 0.95050 0.97093 1.69762 1.40547 1.07964 1.30587 0.87043 0.80864 0.80365 0.81951 1.20161 1.21437 1.18651 1.20049 0.79843 0.86348 0.86435 1.90536 1.58555 1.14532 1.85888 1.21167 1.04514 0.98151 0.91771 1.22592 1.00168 0.96032 0.81088 1.86138 1.80424 1.34570 1.20652 1.18325 0.98531 0.89220 0.87198 1.21252 1.05328 0.91432 1.01363 1.20863 1.00171 0.99613 0.92828 1.20784 1.02032 0.94236 0.97507 1.21011 1.05993 0.94127 0.98348 1.18313 1.01357 0.83363 0.92255 1.86229 1.83428 1.18650 1.33393 1.23036 0.99474 1.00799 0.83460 0.95241 0.94935 0.90046 0.93899 0.93500 0.90752 0.89624 0.91658 0.88834 0.87835 0.91635 0.91652 0.84287 0.85747 0.85925 0.85097 0.88251 0.92963 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.61 10.18 -35.23 -0.36 -7.96 16 3 C 0.06 1.09 6.28 37.16 0.23 1.32 16 4 C 0.10 2.21 4.67 -4.04 -0.02 2.20 16 5 N -0.45 -10.80 2.12 -114.81 -0.24 -11.04 16 6 C -0.33 -8.73 8.43 -14.93 -0.13 -8.86 16 7 H 0.10 2.85 7.45 -52.49 -0.39 2.45 16 8 C 0.08 2.04 5.32 -17.47 -0.09 1.95 16 9 N -0.85 -23.85 13.96 55.50 0.77 -23.08 16 10 Si 0.87 20.60 25.01 -169.99 -4.25 16.35 16 11 H -0.27 -6.29 6.72 56.52 0.38 -5.91 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 14 C 0.48 11.00 7.62 -10.99 -0.08 10.92 16 15 O -0.61 -14.42 15.55 5.55 0.09 -14.33 16 16 C -0.12 -2.32 4.72 -27.88 -0.13 -2.45 16 17 C 0.08 1.35 4.04 37.16 0.15 1.50 16 18 O -0.30 -5.49 9.92 -34.23 -0.34 -5.83 16 19 C 0.11 1.82 6.70 -39.12 -0.26 1.56 16 20 C -0.17 -2.43 9.04 -39.46 -0.36 -2.78 16 21 C -0.12 -1.34 10.04 -39.57 -0.40 -1.73 16 22 C -0.13 -1.35 10.04 -39.58 -0.40 -1.74 16 23 C -0.18 -2.01 9.04 -39.46 -0.36 -2.36 16 24 C 0.09 1.35 6.70 -39.12 -0.26 1.08 16 25 O -0.30 -4.43 10.28 -34.22 -0.35 -4.78 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.71 3.42 -51.93 -0.18 1.54 16 33 H 0.09 1.79 7.36 -51.93 -0.38 1.41 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 1.83 8.04 -51.93 -0.42 1.41 16 36 H 0.10 2.11 7.86 -51.93 -0.41 1.70 16 37 H 0.07 1.15 7.63 -51.93 -0.40 0.75 16 38 H 0.07 1.12 7.61 -51.93 -0.40 0.73 16 39 H 0.14 1.87 6.30 -52.48 -0.33 1.54 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 45 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -31.75 371.97 -5.64 -37.39 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.56 Total: 4.21 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.00 Total: 3.48 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.53 Total: -34.12 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.96 Total: -32.90 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.25 Total: 16.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.75 -5.64 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.597 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds