Wall clock time and date at job start Tue Mar 31 2020 14:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00220 * 2 1 4 4 C 1.52999 * 109.47537 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46762 * 65.00055 * 4 3 2 6 6 C 1.37100 * 120.00314 * 264.46881 * 5 4 3 7 7 H 1.07997 * 119.99956 * 138.26875 * 6 5 4 8 8 C 1.38946 * 119.99618 * 318.27227 * 6 5 4 9 9 N 1.31411 * 120.00452 * 341.89122 * 8 6 5 10 10 Si 1.86800 * 119.99865 * 161.89227 * 8 6 5 11 11 H 1.48501 * 109.47247 * 59.99869 * 10 8 6 12 12 H 1.48498 * 109.47276 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47101 * 300.00027 * 10 8 6 14 14 C 1.34781 * 119.99743 * 84.47367 * 5 4 3 15 15 O 1.21290 * 120.00151 * 359.97438 * 14 5 4 16 16 C 1.50703 * 119.99883 * 179.97438 * 14 5 4 17 17 C 1.50697 * 109.46965 * 180.02562 * 16 14 5 18 18 C 1.38631 * 120.04945 * 269.71832 * 17 16 14 19 19 O 1.35896 * 120.03175 * 0.30191 * 18 17 16 20 20 C 1.42907 * 117.00178 * 179.97438 * 19 18 17 21 21 C 1.38780 * 119.94296 * 180.27637 * 18 17 16 22 22 C 1.38176 * 120.05261 * 0.02562 * 21 18 17 23 23 C 1.38171 * 120.11282 * 0.02562 * 22 21 18 24 24 C 1.38633 * 120.05850 * 90.00163 * 17 16 14 25 25 O 1.35899 * 120.02466 * 359.69594 * 24 17 16 26 26 C 1.42903 * 117.00142 * 180.02562 * 25 24 17 27 27 H 1.08997 * 109.47728 * 59.99715 * 1 2 3 28 28 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46923 * 299.99498 * 1 2 3 30 30 H 1.09006 * 109.46789 * 59.99726 * 3 2 1 31 31 H 1.09002 * 109.47223 * 300.00905 * 3 2 1 32 32 H 1.08999 * 109.47007 * 305.00455 * 4 3 2 33 33 H 1.09000 * 109.47003 * 185.00337 * 4 3 2 34 34 H 0.97006 * 120.00381 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47348 * 59.99687 * 16 14 5 36 36 H 1.09005 * 109.46647 * 299.99827 * 16 14 5 37 37 H 1.09003 * 109.46731 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.46941 * 299.99913 * 20 19 18 39 39 H 1.09000 * 109.46873 * 59.99922 * 20 19 18 40 40 H 1.08000 * 119.97340 * 180.02562 * 21 18 17 41 41 H 1.08005 * 119.94124 * 180.02562 * 22 21 18 42 42 H 1.07995 * 119.97252 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.46947 * 60.00098 * 26 25 24 44 44 H 1.08995 * 109.47314 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.46822 * 300.00554 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2061 -0.7860 -1.3049 7 1 3.8776 -1.3572 -2.1606 8 6 4.8622 -1.4197 -0.2569 9 7 5.5680 -0.7148 0.5987 10 14 4.7411 -3.2737 -0.0639 11 1 5.2833 -3.9343 -1.2784 12 1 5.5254 -3.7002 1.1228 13 1 3.3188 -3.6608 0.1169 14 6 4.1540 1.3216 -2.3535 15 8 3.9498 2.5163 -2.3075 16 6 4.6073 0.6837 -3.6414 17 6 4.7295 1.7400 -4.7093 18 6 3.6433 2.0393 -5.5171 19 8 2.4652 1.3848 -5.3428 20 6 1.3884 1.7447 -6.2106 21 6 3.7600 3.0084 -6.5036 22 6 4.9576 3.6743 -6.6813 23 6 6.0419 3.3770 -5.8782 24 6 5.9298 2.4098 -4.8894 25 8 6.9962 2.1188 -4.0987 26 6 8.2010 2.8484 -4.3400 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1766 0.0890 34 1 6.0264 -1.1573 1.3302 35 1 3.8788 -0.0651 -3.9521 36 1 5.5759 0.2073 -3.4896 37 1 0.5092 1.1491 -5.9649 38 1 1.1574 2.8024 -6.0835 39 1 1.6772 1.5576 -7.2448 40 1 2.9140 3.2423 -7.1329 41 1 5.0463 4.4284 -7.4494 42 1 6.9770 3.8985 -6.0193 43 1 8.0150 3.9133 -4.2007 44 1 8.9710 2.5193 -3.6423 45 1 8.5361 2.6687 -5.3617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457199600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:03 Heat of formation + Delta-G solvation = -138.896456 kcal Electronic energy + Delta-G solvation = -28915.860806 eV Core-core repulsion = 24899.317459 eV Total energy + Delta-G solvation = -4016.543347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61501 -40.26147 -39.89099 -38.53348 -37.27306 -36.48928 -33.80289 -33.46879 -31.10370 -30.41589 -28.63064 -28.61857 -27.36895 -27.20718 -26.38168 -23.94130 -22.67019 -22.51300 -20.89752 -19.49098 -18.60698 -17.93905 -17.81915 -17.24422 -17.11707 -17.01500 -16.70066 -16.50661 -16.34639 -16.08589 -15.99436 -15.68902 -15.62815 -15.13850 -14.44661 -14.11897 -14.05650 -13.64064 -13.45115 -13.32474 -13.23985 -13.09172 -12.86117 -12.84934 -12.53316 -12.49312 -12.40268 -12.32577 -12.17311 -12.08314 -11.80628 -11.58045 -11.55616 -10.94605 -10.55319 -10.31673 -9.35165 -9.18480 -9.01755 -8.21610 -5.98266 0.44232 0.53452 1.45630 1.50687 1.58847 2.10597 2.13683 2.39776 2.74963 2.85179 2.98921 3.09978 3.29105 3.83346 4.05663 4.11149 4.17971 4.24031 4.30268 4.32881 4.41361 4.42434 4.47209 4.49701 4.51599 4.54112 4.60647 4.64745 4.70093 4.71353 4.72963 4.77804 4.79739 4.89511 5.13758 5.31866 5.32568 5.44431 5.51663 5.55556 5.66727 6.11412 6.40731 6.49020 6.49525 6.56875 7.22982 7.69080 8.11785 8.83477 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.005042 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.054909 B = 5552.441360 C = 6735.953965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.066 3.934 4 C 0.122 3.878 5 N -0.444 5.444 6 C -0.334 4.334 7 H 0.082 0.918 8 C 0.008 3.992 9 N -0.898 5.898 10 Si 0.978 3.022 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.477 3.523 15 O -0.630 6.630 16 C -0.048 4.048 17 C -0.158 4.158 18 C 0.158 3.842 19 O -0.338 6.338 20 C 0.020 3.980 21 C -0.246 4.246 22 C -0.043 4.043 23 C -0.247 4.247 24 C 0.155 3.845 25 O -0.340 6.340 26 C 0.021 3.979 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.269 0.731 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 5.501 -12.876 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.011 4.011 4 C -0.002 4.002 5 N -0.162 5.162 6 C -0.461 4.461 7 H 0.099 0.901 8 C -0.194 4.194 9 N -0.536 5.536 10 Si 0.802 3.198 11 H -0.189 1.189 12 H -0.207 1.207 13 H -0.195 1.195 14 C 0.267 3.733 15 O -0.518 6.518 16 C -0.088 4.088 17 C -0.160 4.160 18 C 0.112 3.888 19 O -0.252 6.252 20 C -0.074 4.074 21 C -0.265 4.265 22 C -0.061 4.061 23 C -0.266 4.266 24 C 0.109 3.891 25 O -0.253 6.253 26 C -0.073 4.073 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.410 5.578 -12.353 13.976 hybrid contribution -0.088 -0.385 0.434 0.587 sum -3.498 5.193 -11.919 13.464 Atomic orbital electron populations 1.22888 0.80606 1.03367 1.00212 1.88062 1.20539 1.27702 1.95290 1.22788 0.94500 0.84604 0.99219 1.21232 0.91341 0.97296 0.90314 1.43432 1.57461 1.07475 1.07831 1.19373 1.36612 0.82477 1.07687 0.90081 1.26114 0.93099 1.03888 0.96321 1.70036 1.28656 1.38334 1.16565 0.85239 0.78419 0.78168 0.77995 1.18892 1.20688 1.19545 1.20868 0.79354 0.86029 0.87000 1.90433 1.58214 1.16547 1.86630 1.19753 1.02132 0.96343 0.90573 1.18239 0.92150 1.04269 1.01310 1.18614 0.84820 0.91714 0.93679 1.86080 1.19485 1.60809 1.58825 1.23346 0.87750 1.02126 0.94143 1.21384 1.01519 1.01230 1.02355 1.21089 0.90587 0.97105 0.97281 1.21381 1.02691 1.02535 0.99988 1.18698 0.86617 0.93479 0.90278 1.86122 1.20699 1.62183 1.56344 1.23324 0.83657 0.96611 1.03689 0.94392 0.88700 0.92873 0.91507 0.95371 0.89484 0.93011 0.92143 0.89876 0.90152 0.87034 0.91967 0.90497 0.82555 0.81541 0.82763 0.91907 0.87463 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.75 10.44 -148.98 -1.56 -19.31 16 3 C 0.07 2.99 6.24 71.98 0.45 3.44 16 4 C 0.12 6.45 5.27 86.38 0.45 6.90 16 5 N -0.44 -24.82 2.45 -635.54 -1.56 -26.38 16 6 C -0.33 -18.57 8.29 84.04 0.70 -17.88 16 7 H 0.08 4.43 7.21 -2.91 -0.02 4.41 16 8 C 0.01 0.44 4.95 84.93 0.42 0.86 16 9 N -0.90 -51.06 11.66 21.66 0.25 -50.80 16 10 Si 0.98 42.98 29.59 68.60 2.03 45.01 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.48 26.39 7.59 87.66 0.67 27.06 16 15 O -0.63 -37.01 15.71 -3.06 -0.05 -37.06 16 16 C -0.05 -2.36 4.12 29.10 0.12 -2.24 16 17 C -0.16 -6.78 4.40 -19.68 -0.09 -6.87 16 18 C 0.16 5.85 6.66 22.49 0.15 6.00 16 19 O -0.34 -12.23 9.54 -92.38 -0.88 -13.12 16 20 C 0.02 0.46 9.81 113.37 1.11 1.57 16 21 C -0.25 -6.90 9.04 22.38 0.20 -6.70 16 22 C -0.04 -1.06 10.03 22.24 0.22 -0.84 16 23 C -0.25 -7.16 9.04 22.38 0.20 -6.96 16 24 C 0.16 5.98 6.66 22.49 0.15 6.13 16 25 O -0.34 -13.37 9.54 -92.41 -0.88 -14.25 16 26 C 0.02 0.55 9.81 113.37 1.11 1.66 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 4.87 5.81 -2.39 -0.01 4.85 16 33 H 0.05 2.80 7.59 -2.39 -0.02 2.78 16 34 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 35 H 0.08 3.97 7.09 -2.39 -0.02 3.96 16 36 H 0.08 4.07 7.49 -2.38 -0.02 4.05 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 1.27 7.66 -2.39 -0.02 1.26 16 39 H 0.08 1.34 7.66 -2.39 -0.02 1.32 16 40 H 0.16 3.20 6.29 -2.91 -0.02 3.19 16 41 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.15 3.37 6.29 -2.91 -0.02 3.35 16 43 H 0.06 1.46 7.66 -2.39 -0.02 1.44 16 44 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.08 1.55 7.66 -2.38 -0.02 1.53 16 Total: -1.00 -78.02 374.93 5.47 -72.55 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.99 Total: 29.17 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.12 Total: 14.19 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.31 Total: -77.18 kcal Atomic # 8 Polarization: -80.37 SS G_CDS: -3.37 Total: -83.74 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -78.02 5.47 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.346 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds