Wall clock time and date at job start Tue Mar 31 2020 14:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00447 * 2 1 4 4 C 1.52997 * 109.47393 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46683 * 66.05847 * 4 3 2 6 6 C 1.37096 * 119.99973 * 266.64440 * 5 4 3 7 7 H 1.08005 * 119.99728 * 142.11604 * 6 5 4 8 8 C 1.38951 * 120.00266 * 322.11676 * 6 5 4 9 9 N 1.31414 * 120.00128 * 157.74957 * 8 6 5 10 10 Si 1.86796 * 119.99732 * 337.75353 * 8 6 5 11 11 H 1.48500 * 109.47357 * 95.34323 * 10 8 6 12 12 H 1.48505 * 109.47149 * 215.33914 * 10 8 6 13 13 H 1.48496 * 109.47179 * 335.33611 * 10 8 6 14 14 C 1.34779 * 120.00238 * 86.65562 * 5 4 3 15 15 O 1.21295 * 119.99683 * 359.97438 * 14 5 4 16 16 C 1.50697 * 120.00248 * 179.97438 * 14 5 4 17 17 C 1.53004 * 109.47311 * 179.97438 * 16 14 5 18 18 O 1.42897 * 109.47099 * 180.02562 * 17 16 14 19 19 C 1.35893 * 116.99906 * 180.02562 * 18 17 16 20 20 C 1.38793 * 120.02973 * 359.71707 * 19 18 17 21 21 C 1.38150 * 120.06051 * 179.78950 * 20 19 18 22 22 C 1.38198 * 120.10633 * 0.47168 * 21 20 19 23 23 C 1.38753 * 120.05425 * 359.78521 * 22 21 20 24 24 O 1.35896 * 120.03002 * 179.97438 * 23 22 21 25 25 C 1.42904 * 117.00095 * 0.02562 * 24 23 22 26 26 C 1.38613 * 120.02799 * 179.97438 * 19 18 17 27 27 H 1.09002 * 109.47046 * 59.99400 * 1 2 3 28 28 H 1.08995 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46714 * 300.00189 * 1 2 3 30 30 H 1.09005 * 109.46989 * 59.99808 * 3 2 1 31 31 H 1.09000 * 109.47003 * 300.00248 * 3 2 1 32 32 H 1.08993 * 109.46898 * 306.05564 * 4 3 2 33 33 H 1.09003 * 109.46783 * 186.05643 * 4 3 2 34 34 H 0.96997 * 120.00209 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46844 * 59.99514 * 16 14 5 36 36 H 1.09002 * 109.46924 * 299.99872 * 16 14 5 37 37 H 1.09001 * 109.46807 * 59.99789 * 17 16 14 38 38 H 1.08998 * 109.46721 * 300.00111 * 17 16 14 39 39 H 1.08004 * 119.96752 * 0.02562 * 20 19 18 40 40 H 1.07994 * 119.94913 * 180.23279 * 21 20 19 41 41 H 1.08004 * 119.97671 * 179.76447 * 22 21 20 42 42 H 1.09000 * 109.46774 * 60.00299 * 25 24 23 43 43 H 1.08999 * 109.47387 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47009 * 300.00693 * 25 24 23 45 45 H 1.07997 * 120.05543 * 359.95640 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9785 0.5870 -1.2614 6 6 4.1660 -0.7682 -1.3496 7 1 3.8919 -1.2936 -2.2526 8 6 4.7087 -1.4658 -0.2774 9 7 4.4985 -2.7577 -0.1600 10 14 5.7369 -0.5671 0.9971 11 1 4.8779 -0.1860 2.1469 12 1 6.8290 -1.4562 1.4685 13 1 6.3214 0.6552 0.3892 14 6 4.2018 1.3696 -2.3358 15 8 4.0357 2.5685 -2.2578 16 6 4.6580 0.7549 -3.6339 17 6 4.8357 1.8537 -4.6838 18 8 5.2677 1.2707 -5.9149 19 6 5.4745 2.1160 -6.9587 20 6 5.2600 3.4783 -6.8023 21 6 5.4741 4.3387 -7.8617 22 6 5.8930 3.8444 -9.0824 23 6 6.1038 2.4827 -9.2454 24 8 6.5152 1.9971 -10.4461 25 6 6.7116 2.9457 -11.4967 26 6 5.8947 1.6178 -8.1820 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8496 0.5531 0.8317 33 1 3.9784 2.1747 0.1091 34 1 4.8771 -3.2446 0.5886 35 1 3.9114 0.0399 -3.9795 36 1 5.6076 0.2426 -3.4794 37 1 5.5821 2.5690 -4.3383 38 1 3.8859 2.3656 -4.8382 39 1 4.9290 3.8665 -5.8503 40 1 5.3103 5.3988 -7.7369 41 1 6.0562 4.5185 -9.9103 42 1 7.4711 3.6677 -11.1970 43 1 7.0382 2.4272 -12.3981 44 1 5.7747 3.4658 -11.6965 45 1 6.0589 0.5577 -8.3067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:13 Heat of formation + Delta-G solvation = -114.088597 kcal Electronic energy + Delta-G solvation = -27044.360599 eV Core-core repulsion = 23028.893002 eV Total energy + Delta-G solvation = -4015.467598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43105 -39.28998 -38.76588 -37.11118 -36.39750 -34.89041 -32.05387 -31.80711 -30.72755 -29.51368 -28.95682 -27.46527 -25.89707 -25.01829 -23.97094 -22.75718 -22.16396 -21.16248 -19.01855 -18.72983 -17.05501 -16.72836 -16.40939 -16.13613 -16.01687 -15.92757 -15.85650 -15.64980 -15.33899 -14.78805 -14.55447 -14.40328 -13.95786 -13.71571 -13.59814 -13.00697 -12.92667 -12.58725 -12.49507 -12.35179 -12.03682 -11.93869 -11.73723 -11.59237 -11.44338 -11.21374 -10.99432 -10.91593 -10.78444 -10.62641 -10.33884 -10.11177 -9.94474 -9.22387 -9.09902 -8.64909 -8.52080 -8.12293 -7.84631 -6.43915 -4.01880 1.34187 1.40936 2.82314 3.05254 3.21684 3.27929 3.54134 3.62629 3.73135 4.14669 4.35763 4.47602 4.66808 4.85977 4.90444 4.94939 5.03184 5.13077 5.16145 5.22876 5.42732 5.43013 5.48596 5.58078 5.65378 5.73864 5.77325 5.83111 5.89122 5.92200 6.02788 6.09224 6.15454 6.21676 6.28517 6.36515 6.40581 6.43831 6.52048 6.55521 7.23606 7.31132 7.55849 7.78098 8.07805 8.25320 8.94433 9.31595 9.62211 10.66926 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.002585 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.011480 B =10828.319483 C =11376.371923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.101 3.899 5 N -0.448 5.448 6 C -0.337 4.337 7 H 0.105 0.895 8 C 0.075 3.925 9 N -0.851 5.851 10 Si 0.870 3.130 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.480 3.520 15 O -0.609 6.609 16 C -0.116 4.116 17 C 0.077 3.923 18 O -0.311 6.311 19 C 0.179 3.821 20 C -0.243 4.243 21 C -0.042 4.042 22 C -0.252 4.252 23 C 0.160 3.840 24 O -0.316 6.316 25 C 0.029 3.971 26 C -0.192 4.192 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.274 0.726 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 10.722 -12.926 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.167 5.167 6 C -0.464 4.464 7 H 0.122 0.878 8 C -0.133 4.133 9 N -0.486 5.486 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.270 3.730 15 O -0.496 6.496 16 C -0.156 4.156 17 C 0.002 3.998 18 O -0.224 6.224 19 C 0.132 3.868 20 C -0.262 4.262 21 C -0.060 4.060 22 C -0.271 4.271 23 C 0.115 3.885 24 O -0.229 6.229 25 C -0.066 4.066 26 C -0.211 4.211 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.377 10.502 -12.793 16.556 hybrid contribution 0.155 0.864 0.860 1.229 sum 0.533 11.365 -11.933 16.488 Atomic orbital electron populations 1.22659 0.82975 1.02128 0.98740 1.88215 1.17729 1.26635 1.95018 1.22854 0.94881 0.85204 0.99323 1.21743 0.92298 0.99149 0.89059 1.43609 1.57105 1.07603 1.08384 1.18974 1.42799 0.79733 1.04845 0.87795 1.25243 0.95843 0.95103 0.97110 1.69778 1.40106 1.08246 1.30442 0.87055 0.80725 0.80612 0.81844 1.20123 1.21371 1.18618 1.20011 0.80795 0.85942 0.86251 1.90541 1.58447 1.15049 1.85581 1.21176 1.04934 0.97837 0.91654 1.22630 0.99940 0.96422 0.80780 1.86029 1.81378 1.35586 1.19414 1.18600 0.92122 0.88732 0.87303 1.21331 1.10777 0.92641 1.01449 1.20689 0.94436 0.99343 0.91552 1.21064 1.12302 0.94029 0.99735 1.18542 0.93384 0.91609 0.84955 1.86057 1.81987 1.36499 1.18395 1.23046 1.01080 0.93426 0.89062 1.19441 1.11289 1.00635 0.89753 0.94903 0.90047 0.95178 0.93924 0.93257 0.90451 0.89889 0.91581 0.88668 0.88024 0.91323 0.91447 0.84768 0.85622 0.85653 0.92620 0.88305 0.92629 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.61 10.38 -35.23 -0.37 -7.97 16 3 C 0.06 1.08 6.26 37.16 0.23 1.32 16 4 C 0.10 2.20 4.47 -4.05 -0.02 2.18 16 5 N -0.45 -10.59 2.14 -114.82 -0.25 -10.83 16 6 C -0.34 -8.65 8.76 -14.93 -0.13 -8.78 16 7 H 0.10 2.81 7.24 -52.48 -0.38 2.43 16 8 C 0.08 1.98 5.28 -17.47 -0.09 1.88 16 9 N -0.85 -23.52 13.96 55.50 0.77 -22.74 16 10 Si 0.87 20.24 25.06 -169.99 -4.26 15.98 16 11 H -0.27 -6.18 6.67 56.52 0.38 -5.80 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 14 C 0.48 10.72 7.62 -10.99 -0.08 10.64 16 15 O -0.61 -14.21 15.62 5.54 0.09 -14.12 16 16 C -0.12 -2.24 4.77 -27.88 -0.13 -2.37 16 17 C 0.08 1.31 4.03 37.16 0.15 1.46 16 18 O -0.31 -5.22 10.13 -19.40 -0.20 -5.42 16 19 C 0.18 2.73 6.68 -39.24 -0.26 2.47 16 20 C -0.24 -3.32 9.04 -39.41 -0.36 -3.68 16 21 C -0.04 -0.48 10.04 -39.63 -0.40 -0.88 16 22 C -0.25 -2.81 9.04 -39.41 -0.36 -3.16 16 23 C 0.16 2.05 6.68 -39.24 -0.26 1.78 16 24 O -0.32 -3.65 10.49 -19.41 -0.20 -3.85 16 25 C 0.03 0.20 9.81 101.05 0.99 1.19 16 26 C -0.19 -2.75 9.93 -39.29 -0.39 -3.14 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.76 3.48 -51.93 -0.18 1.58 16 33 H 0.08 1.72 7.53 -51.93 -0.39 1.32 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.10 1.81 7.67 -51.93 -0.40 1.42 16 36 H 0.10 1.96 8.10 -51.93 -0.42 1.54 16 37 H 0.07 1.15 7.63 -51.93 -0.40 0.76 16 38 H 0.07 1.13 7.61 -51.93 -0.40 0.73 16 39 H 0.13 1.79 6.29 -52.48 -0.33 1.46 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.13 1.05 6.29 -52.48 -0.33 0.72 16 42 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 45 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -30.71 372.50 -5.35 -36.06 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.56 Total: 4.74 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 0.00 Total: 2.54 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.53 Total: -33.57 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.68 Total: -31.36 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.26 Total: 15.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.71 -5.35 -36.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.028 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds