Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00447 * 2 1 4 4 C 1.52997 * 109.47393 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46683 * 66.05847 * 4 3 2 6 6 C 1.37096 * 119.99973 * 266.64440 * 5 4 3 7 7 H 1.08005 * 119.99728 * 142.11604 * 6 5 4 8 8 C 1.38951 * 120.00266 * 322.11676 * 6 5 4 9 9 N 1.31414 * 120.00128 * 157.74957 * 8 6 5 10 10 Si 1.86796 * 119.99732 * 337.75353 * 8 6 5 11 11 H 1.48500 * 109.47357 * 95.34323 * 10 8 6 12 12 H 1.48505 * 109.47149 * 215.33914 * 10 8 6 13 13 H 1.48496 * 109.47179 * 335.33611 * 10 8 6 14 14 C 1.34779 * 120.00238 * 86.65562 * 5 4 3 15 15 O 1.21295 * 119.99683 * 359.97438 * 14 5 4 16 16 C 1.50697 * 120.00248 * 179.97438 * 14 5 4 17 17 C 1.53004 * 109.47311 * 179.97438 * 16 14 5 18 18 O 1.42897 * 109.47099 * 180.02562 * 17 16 14 19 19 C 1.35893 * 116.99906 * 180.02562 * 18 17 16 20 20 C 1.38793 * 120.02973 * 359.71707 * 19 18 17 21 21 C 1.38150 * 120.06051 * 179.78950 * 20 19 18 22 22 C 1.38198 * 120.10633 * 0.47168 * 21 20 19 23 23 C 1.38753 * 120.05425 * 359.78521 * 22 21 20 24 24 O 1.35896 * 120.03002 * 179.97438 * 23 22 21 25 25 C 1.42904 * 117.00095 * 0.02562 * 24 23 22 26 26 C 1.38613 * 120.02799 * 179.97438 * 19 18 17 27 27 H 1.09002 * 109.47046 * 59.99400 * 1 2 3 28 28 H 1.08995 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46714 * 300.00189 * 1 2 3 30 30 H 1.09005 * 109.46989 * 59.99808 * 3 2 1 31 31 H 1.09000 * 109.47003 * 300.00248 * 3 2 1 32 32 H 1.08993 * 109.46898 * 306.05564 * 4 3 2 33 33 H 1.09003 * 109.46783 * 186.05643 * 4 3 2 34 34 H 0.96997 * 120.00209 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46844 * 59.99514 * 16 14 5 36 36 H 1.09002 * 109.46924 * 299.99872 * 16 14 5 37 37 H 1.09001 * 109.46807 * 59.99789 * 17 16 14 38 38 H 1.08998 * 109.46721 * 300.00111 * 17 16 14 39 39 H 1.08004 * 119.96752 * 0.02562 * 20 19 18 40 40 H 1.07994 * 119.94913 * 180.23279 * 21 20 19 41 41 H 1.08004 * 119.97671 * 179.76447 * 22 21 20 42 42 H 1.09000 * 109.46774 * 60.00299 * 25 24 23 43 43 H 1.08999 * 109.47387 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47009 * 300.00693 * 25 24 23 45 45 H 1.07997 * 120.05543 * 359.95640 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9785 0.5870 -1.2614 6 6 4.1660 -0.7682 -1.3496 7 1 3.8919 -1.2936 -2.2526 8 6 4.7087 -1.4658 -0.2774 9 7 4.4985 -2.7577 -0.1600 10 14 5.7369 -0.5671 0.9971 11 1 4.8779 -0.1860 2.1469 12 1 6.8290 -1.4562 1.4685 13 1 6.3214 0.6552 0.3892 14 6 4.2018 1.3696 -2.3358 15 8 4.0357 2.5685 -2.2578 16 6 4.6580 0.7549 -3.6339 17 6 4.8357 1.8537 -4.6838 18 8 5.2677 1.2707 -5.9149 19 6 5.4745 2.1160 -6.9587 20 6 5.2600 3.4783 -6.8023 21 6 5.4741 4.3387 -7.8617 22 6 5.8930 3.8444 -9.0824 23 6 6.1038 2.4827 -9.2454 24 8 6.5152 1.9971 -10.4461 25 6 6.7116 2.9457 -11.4967 26 6 5.8947 1.6178 -8.1820 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8496 0.5531 0.8317 33 1 3.9784 2.1747 0.1091 34 1 4.8771 -3.2446 0.5886 35 1 3.9114 0.0399 -3.9795 36 1 5.6076 0.2426 -3.4794 37 1 5.5821 2.5690 -4.3383 38 1 3.8859 2.3656 -4.8382 39 1 4.9290 3.8665 -5.8503 40 1 5.3103 5.3988 -7.7369 41 1 6.0562 4.5185 -9.9103 42 1 7.4711 3.6677 -11.1970 43 1 7.0382 2.4272 -12.3981 44 1 5.7747 3.4658 -11.6965 45 1 6.0589 0.5577 -8.3067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -133.877102 kcal Electronic energy + Delta-G solvation = -27045.218693 eV Core-core repulsion = 23028.893002 eV Total energy + Delta-G solvation = -4016.325691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.46998 -40.85989 -39.97912 -38.63610 -37.42985 -36.71244 -33.97755 -33.28037 -31.81266 -30.87177 -30.15583 -28.15179 -27.27346 -26.86561 -25.44523 -23.93171 -23.46898 -22.31333 -20.84107 -19.82816 -18.77391 -18.20007 -17.69586 -17.45965 -17.26385 -17.15630 -17.01486 -16.80103 -16.62683 -16.30816 -16.10252 -15.58881 -15.49095 -15.38551 -14.58918 -14.58248 -14.27189 -13.98206 -13.90686 -13.53523 -13.31492 -13.14383 -13.10805 -12.97521 -12.87284 -12.59955 -12.44508 -12.26650 -12.05715 -11.95195 -11.72794 -11.69486 -11.57153 -11.09085 -10.64087 -10.42977 -9.75525 -9.53904 -9.12648 -8.45294 -6.04956 0.36036 0.40741 1.20909 1.32831 1.43323 1.76038 1.81923 2.22014 2.44357 2.73982 2.81352 2.92048 3.16900 3.76967 3.91209 3.99066 4.05283 4.08896 4.12726 4.15401 4.22041 4.25875 4.37738 4.39504 4.43778 4.45734 4.53289 4.54820 4.55877 4.62826 4.75631 4.77393 4.81912 4.84214 4.87846 4.97156 5.22666 5.29182 5.43390 5.45389 5.54652 6.09113 6.24572 6.32754 6.39037 6.45121 6.98620 7.39410 7.72807 8.69241 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.002585 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.011480 B =10828.319483 C =11376.371923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.060 3.940 4 C 0.091 3.909 5 N -0.460 5.460 6 C -0.330 4.330 7 H 0.079 0.921 8 C 0.035 3.965 9 N -0.893 5.893 10 Si 0.922 3.078 11 H -0.260 1.260 12 H -0.286 1.286 13 H -0.262 1.262 14 C 0.481 3.519 15 O -0.615 6.615 16 C -0.112 4.112 17 C 0.092 3.908 18 O -0.328 6.328 19 C 0.153 3.847 20 C -0.255 4.255 21 C -0.038 4.038 22 C -0.243 4.243 23 C 0.158 3.842 24 O -0.334 6.334 25 C 0.017 3.983 26 C -0.213 4.213 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.277 0.723 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 13.342 -13.716 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.018 4.018 4 C -0.032 4.032 5 N -0.179 5.179 6 C -0.457 4.457 7 H 0.096 0.904 8 C -0.169 4.169 9 N -0.529 5.529 10 Si 0.748 3.252 11 H -0.186 1.186 12 H -0.212 1.212 13 H -0.186 1.186 14 C 0.271 3.729 15 O -0.503 6.503 16 C -0.152 4.152 17 C 0.017 3.983 18 O -0.242 6.242 19 C 0.107 3.893 20 C -0.274 4.274 21 C -0.056 4.056 22 C -0.261 4.261 23 C 0.112 3.888 24 O -0.248 6.248 25 C -0.077 4.077 26 C -0.232 4.232 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.087 0.913 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.400 13.144 -13.600 18.918 hybrid contribution 0.113 0.113 0.902 0.916 sum 0.513 13.258 -12.698 18.365 Atomic orbital electron populations 1.22859 0.80487 1.03117 1.00444 1.88145 1.20621 1.27692 1.95359 1.22809 0.93239 0.85020 1.00702 1.21907 0.94271 0.99178 0.87808 1.43695 1.57873 1.06908 1.09469 1.18765 1.42356 0.80636 1.03969 0.90354 1.25785 0.96594 0.95589 0.98967 1.69852 1.41703 1.09632 1.31725 0.86214 0.79380 0.79389 0.80205 1.18646 1.21229 1.18647 1.20402 0.79902 0.85852 0.86710 1.90523 1.58567 1.15338 1.85855 1.21107 1.04453 0.98435 0.91203 1.22364 1.00111 0.95186 0.80649 1.85972 1.82075 1.36439 1.19664 1.18822 0.93934 0.89444 0.87083 1.21450 1.11360 0.92207 1.02354 1.21082 0.93005 1.00641 0.90835 1.21445 1.10423 0.93683 1.00565 1.18654 0.92967 0.92116 0.85092 1.86045 1.81657 1.38454 1.18640 1.23409 1.02292 0.93554 0.88400 1.19553 1.12429 1.00848 0.90412 0.94019 0.89551 0.92516 0.90431 0.93769 0.91386 0.88786 0.91311 0.88958 0.88352 0.91166 0.91251 0.84855 0.82401 0.82302 0.91299 0.86279 0.91295 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.68 10.38 -148.98 -1.55 -18.23 16 3 C 0.06 2.26 6.26 71.98 0.45 2.71 16 4 C 0.09 3.89 4.47 86.38 0.39 4.28 16 5 N -0.46 -21.78 2.14 -635.55 -1.36 -23.14 16 6 C -0.33 -17.33 8.76 84.04 0.74 -16.59 16 7 H 0.08 4.43 7.24 -2.91 -0.02 4.41 16 8 C 0.04 1.88 5.28 84.93 0.45 2.33 16 9 N -0.89 -50.41 13.96 21.66 0.30 -50.10 16 10 Si 0.92 41.70 25.06 68.60 1.72 43.42 16 11 H -0.26 -11.12 6.67 99.48 0.66 -10.45 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.48 21.53 7.62 87.66 0.67 22.20 16 15 O -0.62 -28.30 15.62 -3.08 -0.05 -28.35 16 16 C -0.11 -4.43 4.77 29.85 0.14 -4.29 16 17 C 0.09 3.18 4.03 71.98 0.29 3.47 16 18 O -0.33 -11.36 10.13 -92.35 -0.94 -12.29 16 19 C 0.15 4.72 6.68 22.49 0.15 4.87 16 20 C -0.25 -6.75 9.04 22.38 0.20 -6.54 16 21 C -0.04 -0.77 10.04 22.24 0.22 -0.55 16 22 C -0.24 -4.70 9.04 22.38 0.20 -4.50 16 23 C 0.16 3.82 6.68 22.49 0.15 3.97 16 24 O -0.33 -7.22 10.49 -92.39 -0.97 -8.19 16 25 C 0.02 0.19 9.81 113.37 1.11 1.30 16 26 C -0.21 -6.20 9.93 22.46 0.22 -5.98 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 3.02 3.48 -2.39 -0.01 3.01 16 33 H 0.09 3.74 7.53 -2.39 -0.02 3.73 16 34 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.09 3.67 7.67 -2.39 -0.02 3.66 16 36 H 0.10 3.92 8.10 -2.39 -0.02 3.90 16 37 H 0.07 2.37 7.63 -2.39 -0.02 2.35 16 38 H 0.07 2.33 7.61 -2.39 -0.02 2.32 16 39 H 0.13 3.47 6.29 -2.91 -0.02 3.45 16 40 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.16 1.96 6.29 -2.91 -0.02 1.94 16 42 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 45 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -66.87 372.50 4.74 -62.13 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.95 Total: 26.00 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.63 Total: 8.75 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.06 Total: -73.25 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -3.50 Total: -67.05 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.72 Total: 43.42 kcal Total: -66.87 4.74 -62.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.746 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds