Wall clock time and date at job start Tue Mar 31 2020 14:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00049 * 2 1 4 4 C 1.53004 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47153 * 64.99669 * 4 3 2 6 6 C 1.36942 * 119.99876 * 270.00045 * 5 4 3 7 7 H 1.08000 * 120.00008 * 325.72163 * 6 5 4 8 8 C 1.38816 * 119.99966 * 145.72358 * 6 5 4 9 9 N 1.31620 * 120.00000 * 159.15564 * 8 6 5 10 10 Si 1.86801 * 119.99969 * 339.15512 * 8 6 5 11 11 H 1.48501 * 109.47000 * 95.43669 * 10 8 6 12 12 H 1.48500 * 109.47349 * 215.43902 * 10 8 6 13 13 H 1.48499 * 109.47122 * 335.44351 * 10 8 6 14 14 C 1.46499 * 120.00414 * 90.00146 * 5 4 3 15 15 C 1.53000 * 109.47058 * 83.76332 * 14 5 4 16 16 O 1.42901 * 109.46964 * 62.69604 * 15 14 5 17 17 C 1.35644 * 117.00055 * 179.97438 * 16 15 14 18 18 C 1.38712 * 120.15044 * 0.02562 * 17 16 15 19 19 C 1.38051 * 120.08395 * 179.97438 * 18 17 16 20 20 C 1.38569 * 120.40740 * 359.97438 * 19 18 17 21 21 C 1.37754 * 120.30837 * 359.97438 * 20 19 18 22 22 C 1.39780 * 119.90213 * 0.02562 * 21 20 19 23 23 C 1.47395 * 120.19775 * 179.97438 * 22 21 20 24 24 O 1.21512 * 119.99906 * 179.97438 * 23 22 21 25 25 O 1.34744 * 120.00040 * 0.02562 * 23 22 21 26 26 C 1.45199 * 117.00315 * 180.02562 * 25 23 22 27 27 H 1.08992 * 109.47021 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 300.00568 * 1 2 3 29 29 H 1.08999 * 109.46978 * 60.00123 * 1 2 3 30 30 H 1.08992 * 109.47546 * 59.99832 * 3 2 1 31 31 H 1.09004 * 109.47009 * 299.99270 * 3 2 1 32 32 H 1.09002 * 109.46743 * 304.99483 * 4 3 2 33 33 H 1.08999 * 109.47326 * 184.99716 * 4 3 2 34 34 H 0.96999 * 119.99914 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46980 * 323.76544 * 14 5 4 36 36 H 1.08997 * 109.47724 * 203.76773 * 14 5 4 37 37 H 1.08999 * 109.47457 * 302.70135 * 15 14 5 38 38 H 1.08999 * 109.47275 * 182.69642 * 15 14 5 39 39 H 1.07997 * 119.96070 * 359.97438 * 18 17 16 40 40 H 1.08004 * 119.79711 * 180.02562 * 19 18 17 41 41 H 1.07996 * 119.84696 * 180.02562 * 20 19 18 42 42 H 1.07998 * 120.05206 * 179.72611 * 21 20 19 43 43 H 1.08997 * 109.48024 * 179.97438 * 26 25 23 44 44 H 1.09004 * 109.46779 * 299.99645 * 26 25 23 45 45 H 1.09003 * 109.47231 * 59.98918 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7972 -1.3367 7 1 4.4168 -1.3650 -0.4756 8 6 3.8081 -1.4474 -2.5287 9 7 4.2943 -2.6489 -2.7574 10 14 2.7298 -0.6170 -3.8082 11 1 3.5870 0.0658 -4.8103 12 1 1.8917 -1.6378 -4.4872 13 1 1.8533 0.3812 -3.1444 14 6 4.2865 1.4004 -2.4148 15 6 5.7233 1.9142 -2.3038 16 8 6.6276 0.8079 -2.3235 17 6 7.9508 1.0925 -2.2337 18 6 8.3747 2.4090 -2.1280 19 6 9.7217 2.6970 -2.0361 20 6 10.6595 1.6769 -2.0480 21 6 10.2568 0.3636 -2.1513 22 6 8.8962 0.0573 -2.2451 23 6 8.4581 -1.3456 -2.3565 24 8 7.2743 -1.6078 -2.4373 25 8 9.3701 -2.3374 -2.3676 26 6 8.8668 -3.6947 -2.4803 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8515 0.5682 0.8410 33 1 3.9787 2.1764 0.0889 34 1 4.0923 -3.1034 -3.5902 35 1 3.5997 2.2462 -2.4480 36 1 4.1808 0.8107 -3.3254 37 1 5.8417 2.4635 -1.3699 38 1 5.9389 2.5747 -3.1437 39 1 7.6501 3.2097 -2.1175 40 1 10.0466 3.7237 -1.9535 41 1 11.7109 1.9125 -1.9752 42 1 10.9914 -0.4279 -2.1647 43 1 9.7030 -4.3938 -2.4778 44 1 8.2104 -3.9099 -1.6371 45 1 8.3089 -3.7992 -3.4109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459533732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:37 Heat of formation + Delta-G solvation = -88.462252 kcal Electronic energy + Delta-G solvation = -28896.762301 eV Core-core repulsion = 24882.405945 eV Total energy + Delta-G solvation = -4014.356356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.16531 -38.91483 -37.52429 -36.98934 -35.51823 -35.25938 -31.44145 -31.32459 -30.46259 -29.29364 -27.80364 -27.07203 -25.74372 -23.87680 -23.44179 -23.05626 -21.50872 -20.38304 -19.85173 -18.01230 -16.95122 -16.73321 -16.15268 -15.83061 -15.67496 -15.45124 -15.35499 -14.90799 -14.71917 -14.62234 -14.28396 -14.21641 -13.61909 -13.05385 -12.91208 -12.80224 -12.48540 -12.42784 -12.04002 -11.89653 -11.81321 -11.62145 -11.33955 -11.21655 -11.03343 -10.89408 -10.84130 -10.60030 -10.33220 -10.08014 -10.00841 -9.63690 -9.41664 -9.23501 -8.94808 -8.87796 -8.19925 -7.88936 -6.70194 -5.55172 -2.94338 1.08220 1.63449 3.24339 3.32549 3.46020 3.62346 3.65016 3.70953 4.12858 4.52943 4.81019 4.92322 4.99056 5.00451 5.19165 5.38422 5.50755 5.54968 5.63757 5.65724 5.68010 5.74887 5.78118 5.79429 5.81885 5.88418 5.95434 5.98637 6.05886 6.08530 6.11785 6.16983 6.25285 6.28706 6.38139 6.45718 6.55819 6.61821 6.82719 6.90434 7.13201 7.90871 7.95129 8.32734 8.66933 8.71049 9.25184 10.08713 10.34651 11.60128 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.004863 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.963139 B = 5756.167396 C = 6858.049888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.042 3.958 4 C 0.148 3.852 5 N -0.589 5.589 6 C -0.228 4.228 7 H 0.076 0.924 8 C 0.050 3.950 9 N -0.884 5.884 10 Si 0.866 3.134 11 H -0.296 1.296 12 H -0.308 1.308 13 H -0.275 1.275 14 C 0.133 3.867 15 C 0.035 3.965 16 O -0.235 6.235 17 C 0.197 3.803 18 C -0.233 4.233 19 C -0.051 4.051 20 C -0.189 4.189 21 C -0.030 4.030 22 C -0.157 4.157 23 C 0.466 3.534 24 O -0.403 6.403 25 O -0.376 6.376 26 C 0.044 3.956 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.252 0.748 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 10.059 2.202 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C -0.038 4.038 4 C 0.022 3.978 5 N -0.310 5.310 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.150 4.150 9 N -0.525 5.525 10 Si 0.699 3.301 11 H -0.225 1.225 12 H -0.237 1.237 13 H -0.200 1.200 14 C 0.006 3.994 15 C -0.043 4.043 16 O -0.144 6.144 17 C 0.147 3.853 18 C -0.252 4.252 19 C -0.070 4.070 20 C -0.208 4.208 21 C -0.048 4.048 22 C -0.159 4.159 23 C 0.305 3.695 24 O -0.283 6.283 25 O -0.295 6.295 26 C -0.050 4.050 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.922 9.389 2.068 12.457 hybrid contribution -1.037 0.913 -0.937 1.669 sum 6.885 10.302 1.131 12.442 Atomic orbital electron populations 1.22644 0.83715 1.01891 0.98373 1.88205 1.17065 1.26976 1.94817 1.23375 0.98099 0.84877 0.97437 1.21020 0.89324 0.96435 0.91050 1.44037 1.75329 1.03932 1.07695 1.18388 1.38471 0.79512 0.99240 0.90643 1.25125 0.97914 0.94984 0.96975 1.69867 1.43991 1.14501 1.24191 0.87158 0.82218 0.78628 0.82133 1.22512 1.23732 1.19998 1.21377 0.89603 0.94826 0.93594 1.23900 0.92757 0.88307 0.99332 1.86734 1.10592 1.33333 1.83692 1.19342 0.85428 0.91769 0.88799 1.21216 0.97326 0.95118 1.11498 1.21072 0.92341 0.99200 0.94357 1.20883 0.99566 0.92490 1.07815 1.21266 0.93726 0.97031 0.92803 1.18552 0.92751 0.89463 1.15105 1.20990 0.85326 0.85758 0.77440 1.91380 1.15278 1.83104 1.38572 1.86415 1.40556 1.16717 1.85805 1.23091 0.99933 0.78839 1.03102 0.90327 0.95420 0.95271 0.95382 0.94890 0.92005 0.93065 0.93809 0.92514 0.91174 0.92746 0.93473 0.85026 0.85886 0.85783 0.84491 0.89281 0.91681 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.64 10.18 -35.23 -0.36 -8.00 16 3 C 0.04 0.78 6.28 37.16 0.23 1.01 16 4 C 0.15 2.93 6.12 -4.04 -0.02 2.90 16 5 N -0.59 -14.02 2.06 -173.24 -0.36 -14.38 16 6 C -0.23 -6.55 9.23 -15.06 -0.14 -6.69 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 8 C 0.05 1.50 5.32 -17.43 -0.09 1.40 16 9 N -0.88 -28.15 13.97 55.49 0.78 -27.37 16 10 Si 0.87 23.41 24.78 -169.99 -4.21 19.20 16 11 H -0.30 -7.87 6.68 56.52 0.38 -7.49 16 12 H -0.31 -8.59 7.11 56.52 0.40 -8.18 16 13 H -0.27 -7.16 7.10 56.52 0.40 -6.76 16 14 C 0.13 2.86 4.66 -4.04 -0.02 2.84 16 15 C 0.04 0.65 5.09 37.16 0.19 0.84 16 16 O -0.24 -5.22 7.88 -40.52 -0.32 -5.53 16 17 C 0.20 3.69 6.70 -38.67 -0.26 3.43 16 18 C -0.23 -3.39 9.03 -39.48 -0.36 -3.75 16 19 C -0.05 -0.62 10.03 -39.53 -0.40 -1.01 16 20 C -0.19 -2.26 10.02 -39.64 -0.40 -2.66 16 21 C -0.03 -0.43 9.61 -39.18 -0.38 -0.80 16 22 C -0.16 -2.89 5.89 -104.86 -0.62 -3.51 16 23 C 0.47 9.89 7.89 34.46 0.27 10.17 16 24 O -0.40 -10.62 14.95 -26.60 -0.40 -11.01 16 25 O -0.38 -6.82 9.82 -40.61 -0.40 -7.22 16 26 C 0.04 0.72 10.57 101.05 1.07 1.79 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 33 H 0.05 0.83 8.01 -51.93 -0.42 0.42 16 34 H 0.25 7.78 8.31 -40.82 -0.34 7.45 16 35 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 36 H 0.07 1.75 3.03 -51.93 -0.16 1.59 16 37 H 0.05 0.89 7.60 -51.93 -0.39 0.49 16 38 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 39 H 0.13 1.67 6.30 -52.49 -0.33 1.33 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.14 1.69 7.61 -52.49 -0.40 1.29 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -36.52 375.94 -6.15 -42.67 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.74 Total: -1.62 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 0.20 Total: 7.60 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.42 Total: -41.75 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.47 Total: -31.77 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.21 Total: 19.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.52 -6.15 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.793 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds