Wall clock time and date at job start Tue Mar 31 2020 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00303 * 2 1 4 4 C 1.53002 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46978 * 64.99779 * 4 3 2 6 6 C 1.36938 * 119.99961 * 264.45131 * 5 4 3 7 7 H 1.07998 * 120.00093 * 146.23376 * 6 5 4 8 8 C 1.38816 * 120.00230 * 326.23034 * 6 5 4 9 9 N 1.31619 * 119.99673 * 337.57919 * 8 6 5 10 10 Si 1.86790 * 120.00304 * 157.57664 * 8 6 5 11 11 H 1.48501 * 109.47043 * 60.00058 * 10 8 6 12 12 H 1.48499 * 109.47363 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47422 * 300.00415 * 10 8 6 14 14 C 1.46496 * 120.00213 * 84.45284 * 5 4 3 15 15 C 1.53001 * 109.47153 * 89.99349 * 14 5 4 16 16 O 1.42905 * 109.46923 * 65.00625 * 15 14 5 17 17 C 1.35910 * 117.00260 * 180.02562 * 16 15 14 18 18 C 1.38865 * 119.97996 * 359.71706 * 17 16 15 19 19 C 1.38248 * 120.24621 * 179.76875 * 18 17 16 20 20 C 1.37989 * 120.21248 * 0.51249 * 19 18 17 21 21 C 1.39620 * 119.96240 * 359.74385 * 20 19 18 22 22 C 1.47735 * 120.12329 * 180.02562 * 21 20 19 23 23 O 1.21473 * 120.00093 * 179.97438 * 22 21 20 24 24 O 1.34720 * 120.00166 * 359.97438 * 22 21 20 25 25 C 1.45196 * 116.99969 * 180.02562 * 24 22 21 26 26 C 1.38440 * 119.98184 * 180.02562 * 17 16 15 27 27 H 1.09002 * 109.47365 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46898 * 300.00120 * 1 2 3 29 29 H 1.09000 * 109.46824 * 59.99975 * 1 2 3 30 30 H 1.09000 * 109.47247 * 59.99490 * 3 2 1 31 31 H 1.09008 * 109.47047 * 300.00080 * 3 2 1 32 32 H 1.08996 * 109.46853 * 304.99594 * 4 3 2 33 33 H 1.08999 * 109.47241 * 184.99828 * 4 3 2 34 34 H 0.96996 * 120.00056 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46964 * 329.99723 * 14 5 4 36 36 H 1.08997 * 109.47802 * 210.00061 * 14 5 4 37 37 H 1.09004 * 109.47466 * 184.99754 * 15 14 5 38 38 H 1.08998 * 109.47576 * 305.00295 * 15 14 5 39 39 H 1.07997 * 119.87263 * 0.02932 * 18 17 16 40 40 H 1.08001 * 119.89158 * 180.23805 * 19 18 17 41 41 H 1.08011 * 120.01847 * 179.77068 * 20 19 18 42 42 H 1.08997 * 109.47047 * 59.99746 * 25 24 22 43 43 H 1.08997 * 109.47249 * 180.02562 * 25 24 22 44 44 H 1.09008 * 109.46902 * 300.00474 * 25 24 22 45 45 H 1.07994 * 120.10487 * 359.94694 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2062 -0.7846 -1.3046 7 1 3.9955 -1.3340 -2.2102 8 6 4.7106 -1.4458 -0.1931 9 7 5.3710 -0.7760 0.7275 10 14 4.4522 -3.2861 -0.0040 11 1 5.0709 -3.9935 -1.1538 12 1 5.0825 -3.7473 1.2590 13 1 2.9971 -3.5804 0.0332 14 6 4.1693 1.3869 -2.4493 15 6 5.6122 1.8941 -2.4915 16 8 6.5020 0.7866 -2.6463 17 6 7.8309 1.0658 -2.7016 18 6 8.2679 2.3811 -2.6146 19 6 9.6186 2.6710 -2.6656 20 6 10.5416 1.6559 -2.8139 21 6 10.1117 0.3308 -2.9075 22 6 11.0968 -0.7587 -3.0658 23 8 10.7203 -1.9108 -3.1466 24 8 12.4125 -0.4746 -3.1205 25 6 13.3228 -1.5949 -3.2775 26 6 8.7479 0.0395 -2.8512 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1763 0.0889 34 1 5.7239 -1.2380 1.5040 35 1 3.4864 2.2360 -2.4208 36 1 3.9682 0.7888 -3.3380 37 1 5.7328 2.5771 -3.3324 38 1 5.8409 2.4170 -1.5629 39 1 7.5499 3.1801 -2.5026 40 1 9.9523 3.6956 -2.5935 41 1 11.5959 1.8863 -2.8570 42 1 13.0974 -2.1187 -4.2064 43 1 14.3488 -1.2280 -3.3065 44 1 13.2055 -2.2789 -2.4370 45 1 8.4090 -0.9834 -2.9231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459538847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:39 Heat of formation + Delta-G solvation = -128.249742 kcal Electronic energy + Delta-G solvation = -27584.916880 eV Core-core repulsion = 23568.835209 eV Total energy + Delta-G solvation = -4016.081671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71537 -40.71629 -38.90393 -38.27951 -37.53172 -36.86446 -33.51926 -32.42146 -31.80491 -30.65161 -29.19892 -28.62656 -27.09891 -25.88394 -25.02992 -23.75963 -23.35559 -22.14031 -21.24029 -19.61863 -18.66305 -18.35554 -17.46296 -17.38562 -17.28837 -16.99311 -16.76289 -16.66724 -16.42782 -16.22931 -15.52672 -15.28171 -15.07569 -14.83025 -14.61787 -14.48873 -14.31516 -13.61454 -13.46115 -13.35039 -13.10227 -13.02731 -12.88553 -12.72708 -12.57979 -12.44759 -12.30997 -12.07526 -11.99546 -11.87219 -11.77845 -11.55137 -11.54044 -11.46465 -10.39626 -10.30568 -10.12419 -9.12575 -8.48656 -7.72620 -5.20712 -0.39494 0.46706 1.44177 1.44752 1.45656 1.51967 1.53947 2.54995 2.61598 2.79110 3.23828 3.43427 3.64321 3.69514 3.84496 4.07253 4.18518 4.27174 4.30890 4.33999 4.37160 4.44858 4.49010 4.50990 4.57574 4.59544 4.64194 4.68720 4.79434 4.80575 4.84913 4.90957 4.97078 5.02387 5.13782 5.22136 5.25239 5.34553 5.38682 5.73800 5.77954 5.87178 6.49898 6.59321 6.69685 6.72069 7.30905 7.99809 8.44756 9.27181 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003424 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.833222 B = 8176.004468 C = 9514.258133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.138 3.862 5 N -0.585 5.585 6 C -0.215 4.215 7 H 0.040 0.960 8 C -0.026 4.026 9 N -0.914 5.914 10 Si 0.930 3.070 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.282 1.282 14 C 0.139 3.861 15 C 0.046 3.954 16 O -0.310 6.310 17 C 0.116 3.884 18 C -0.175 4.175 19 C -0.080 4.080 20 C -0.101 4.101 21 C -0.105 4.105 22 C 0.512 3.488 23 O -0.541 6.541 24 O -0.347 6.347 25 C 0.027 3.973 26 C -0.123 4.123 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.242 0.758 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.062 0.938 43 H 0.144 0.856 44 H 0.057 0.943 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.015 12.186 -6.959 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.012 3.988 5 N -0.305 5.305 6 C -0.346 4.346 7 H 0.058 0.942 8 C -0.222 4.222 9 N -0.561 5.561 10 Si 0.761 3.239 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.208 1.208 14 C 0.013 3.987 15 C -0.031 4.031 16 O -0.223 6.223 17 C 0.069 3.931 18 C -0.194 4.194 19 C -0.097 4.097 20 C -0.119 4.119 21 C -0.106 4.106 22 C 0.359 3.641 23 O -0.433 6.433 24 O -0.263 6.263 25 C -0.066 4.066 26 C -0.142 4.142 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.081 0.919 43 H 0.162 0.838 44 H 0.076 0.924 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.009 11.412 -6.865 15.540 hybrid contribution -0.454 -1.536 0.422 1.656 sum 7.555 9.877 -6.443 14.005 Atomic orbital electron populations 1.22810 0.81545 1.02482 1.00155 1.88140 1.19665 1.29095 1.95215 1.23260 0.96637 0.83850 0.98712 1.20993 0.89597 0.96545 0.91648 1.43832 1.75727 1.03898 1.07030 1.18745 1.33515 0.84218 0.98088 0.94213 1.25254 0.97883 0.99363 0.99727 1.70051 1.37755 1.35582 1.12666 0.85910 0.77634 0.84143 0.76183 1.21613 1.22370 1.20833 1.21269 0.91441 0.95427 0.90558 1.23799 0.91688 0.87631 1.00028 1.86361 1.12828 1.36876 1.86251 1.19193 0.84614 0.93777 0.95474 1.21857 0.98896 0.94575 1.04083 1.21379 0.90841 1.01178 0.96343 1.21588 1.02062 0.89622 0.98616 1.18810 0.90018 0.93494 1.08286 1.21360 0.82853 0.87918 0.71999 1.90836 1.81250 1.23673 1.47509 1.86517 1.16021 1.40618 1.83133 1.23646 0.92815 0.87914 1.02177 1.20343 0.91443 0.98744 1.03693 0.90321 0.93464 0.93623 0.93380 0.93674 0.91189 0.92899 0.94902 0.88810 0.93541 0.90173 0.93323 0.82923 0.80566 0.81557 0.91890 0.83814 0.92381 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.30 10.44 -148.98 -1.56 -18.85 16 3 C 0.05 2.03 6.28 71.98 0.45 2.48 16 4 C 0.14 6.23 5.63 86.38 0.49 6.71 16 5 N -0.58 -28.06 2.39 -702.02 -1.68 -29.74 16 6 C -0.21 -12.14 8.78 84.03 0.74 -11.40 16 7 H 0.04 2.36 7.92 -2.91 -0.02 2.33 16 8 C -0.03 -1.55 4.91 84.86 0.42 -1.13 16 9 N -0.91 -55.43 11.34 21.65 0.25 -55.18 16 10 Si 0.93 49.28 29.61 68.60 2.03 51.31 16 11 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 12 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 13 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 14 C 0.14 5.28 6.12 86.38 0.53 5.81 16 15 C 0.05 1.60 5.08 71.98 0.37 1.97 16 16 O -0.31 -13.65 9.61 -92.54 -0.89 -14.54 16 17 C 0.12 4.44 6.68 22.47 0.15 4.59 16 18 C -0.18 -4.92 9.03 22.42 0.20 -4.72 16 19 C -0.08 -1.73 10.02 22.21 0.22 -1.50 16 20 C -0.10 -2.42 9.61 22.54 0.22 -2.20 16 21 C -0.10 -3.45 5.87 -20.11 -0.12 -3.57 16 22 C 0.51 16.96 7.90 70.33 0.56 17.51 16 23 O -0.54 -21.87 16.14 19.92 0.32 -21.55 16 24 O -0.35 -8.62 9.81 -56.30 -0.55 -9.18 16 25 C 0.03 0.49 10.56 113.37 1.20 1.69 16 26 C -0.12 -4.94 9.53 22.64 0.22 -4.72 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.51 8.12 -2.38 -0.02 1.49 16 32 H 0.07 3.81 5.34 -2.39 -0.01 3.80 16 33 H 0.05 2.13 8.11 -2.39 -0.02 2.11 16 34 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.09 2.82 8.05 -2.39 -0.02 2.80 16 36 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 37 H 0.08 2.11 7.65 -2.38 -0.02 2.09 16 38 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16 39 H 0.15 3.53 6.28 -2.91 -0.02 3.51 16 40 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.17 2.87 7.61 -2.90 -0.02 2.85 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.11 4.90 7.65 -2.91 -0.02 4.88 16 Total: -1.00 -78.39 383.47 5.78 -72.61 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.98 Total: 11.54 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.88 Total: 13.59 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.43 Total: -84.92 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -2.68 Total: -64.12 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.03 Total: 51.31 kcal Total: -78.39 5.78 -72.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.638 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds