Wall clock time and date at job start Tue Mar 31 2020 14:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00207 * 2 1 4 4 C 1.52996 * 109.47383 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47023 * 65.70607 * 4 3 2 6 6 C 1.36934 * 120.00250 * 267.91177 * 5 4 3 7 7 H 1.08007 * 120.00364 * 142.25478 * 6 5 4 8 8 C 1.38810 * 120.00132 * 322.25419 * 6 5 4 9 9 N 1.31622 * 120.00364 * 156.37864 * 8 6 5 10 10 Si 1.86800 * 119.99782 * 336.38586 * 8 6 5 11 11 H 1.48508 * 109.47202 * 95.50623 * 10 8 6 12 12 H 1.48501 * 109.46960 * 215.50304 * 10 8 6 13 13 H 1.48494 * 109.47006 * 335.50760 * 10 8 6 14 14 C 1.46500 * 119.99895 * 87.90718 * 5 4 3 15 15 C 1.53005 * 109.47593 * 270.00333 * 14 5 4 16 16 C 1.52999 * 109.47208 * 180.02562 * 15 14 5 17 17 O 1.42905 * 109.46614 * 180.02562 * 16 15 14 18 18 C 1.35980 * 116.99457 * 179.97438 * 17 16 15 19 19 C 1.38691 * 119.98937 * 359.97079 * 18 17 16 20 20 C 1.38221 * 120.08834 * 179.81406 * 19 18 17 21 21 C 1.38536 * 120.09372 * 0.42457 * 20 19 18 22 22 C 1.39261 * 119.91661 * 359.57366 * 21 20 19 23 23 C 1.38523 * 119.88183 * 0.21681 * 22 21 20 24 24 O 1.36505 * 108.64270 * 180.25387 * 22 21 20 25 25 C 1.43984 * 105.50235 * 342.69994 * 24 22 21 26 26 O 1.36600 * 131.46021 * 179.88466 * 21 20 19 27 27 H 1.08999 * 109.47243 * 60.00217 * 1 2 3 28 28 H 1.09006 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47488 * 299.99993 * 1 2 3 30 30 H 1.09002 * 109.46935 * 59.99494 * 3 2 1 31 31 H 1.09000 * 109.46986 * 300.00333 * 3 2 1 32 32 H 1.09000 * 109.47418 * 305.71166 * 4 3 2 33 33 H 1.08991 * 109.47112 * 185.70591 * 4 3 2 34 34 H 0.97000 * 119.99944 * 180.02562 * 9 8 6 35 35 H 1.09009 * 109.47129 * 150.00260 * 14 5 4 36 36 H 1.08995 * 109.47052 * 30.00292 * 14 5 4 37 37 H 1.08996 * 109.46726 * 59.99496 * 15 14 5 38 38 H 1.09004 * 109.46797 * 299.99900 * 15 14 5 39 39 H 1.08991 * 109.47488 * 59.99903 * 16 15 14 40 40 H 1.09004 * 109.46904 * 299.99521 * 16 15 14 41 41 H 1.08001 * 119.95901 * 0.02562 * 19 18 17 42 42 H 1.07994 * 119.95350 * 180.31252 * 20 19 18 43 43 H 1.08003 * 120.00266 * 180.02562 * 23 22 21 44 44 H 1.08999 * 110.56738 * 268.58752 * 25 24 22 45 45 H 1.08994 * 110.57222 * 145.71027 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5794 -1.2580 6 6 4.1402 -0.7775 -1.3454 7 1 3.8662 -1.2970 -2.2518 8 6 4.6571 -1.4854 -0.2690 9 7 4.3983 -2.7695 -0.1405 10 14 5.7199 -0.6156 0.9972 11 1 4.8779 -0.1965 2.1464 12 1 6.7808 -1.5399 1.4719 13 1 6.3458 0.5812 0.3798 14 6 4.2465 1.4258 -2.4232 15 6 2.9659 1.5829 -3.2457 16 6 3.2467 2.4663 -4.4629 17 8 2.0504 2.6134 -5.2306 18 6 2.1280 3.3754 -6.3542 19 6 3.3307 3.9684 -6.7081 20 6 3.4128 4.7401 -7.8518 21 6 2.2918 4.9306 -8.6432 22 6 1.0830 4.3361 -8.2899 23 6 1.0043 3.5596 -7.1455 24 8 0.1441 4.6681 -9.2235 25 6 0.6853 5.8017 -9.9272 26 8 2.1098 5.6357 -9.7989 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8500 0.5581 0.8353 33 1 3.9783 2.1752 0.1028 34 1 4.7592 -3.2641 0.6118 35 1 5.0187 0.9632 -3.0380 36 1 4.5864 2.4061 -2.0895 37 1 2.1937 2.0453 -2.6309 38 1 2.6259 0.6024 -3.5794 39 1 4.0187 2.0035 -5.0774 40 1 3.5869 3.4468 -4.1294 41 1 4.2053 3.8242 -6.0910 42 1 4.3517 5.1967 -8.1280 43 1 0.0680 3.0972 -6.8699 44 1 0.3644 6.7321 -9.4587 45 1 0.3899 5.7781 -10.9761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459543778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:20 Heat of formation + Delta-G solvation = -106.158071 kcal Electronic energy + Delta-G solvation = -27038.422325 eV Core-core repulsion = 23023.298621 eV Total energy + Delta-G solvation = -4015.123704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.14064 -40.75685 -39.08463 -37.74192 -37.30010 -37.18083 -34.25005 -33.04122 -31.68005 -30.51983 -29.99894 -27.29942 -27.11099 -26.67855 -25.00211 -24.06554 -23.57362 -22.60708 -21.90176 -19.64976 -18.90681 -18.75313 -18.42686 -17.73736 -17.64965 -17.15989 -16.95135 -16.60634 -16.32397 -16.13889 -15.73243 -15.48118 -15.33743 -15.05794 -14.89228 -14.47749 -14.28245 -14.05600 -13.99797 -13.90963 -13.70841 -13.50373 -13.20898 -13.08762 -12.58777 -12.44585 -12.36785 -12.30772 -12.13640 -11.77889 -11.69593 -11.53437 -11.33808 -11.14214 -10.51534 -10.29640 -9.84618 -8.81964 -8.68766 -8.06195 -5.42897 0.05810 0.18074 1.37786 1.46750 1.57481 1.58491 2.20682 2.51754 2.53600 2.66245 3.13566 3.15356 3.44332 3.54220 3.80666 3.82924 3.99261 4.03525 4.08827 4.22386 4.27902 4.33333 4.39781 4.45456 4.50544 4.56374 4.57534 4.60893 4.62420 4.67598 4.72558 4.86096 4.86597 4.92445 5.00687 5.05709 5.11311 5.19722 5.24718 5.32779 5.52855 6.01721 6.05303 6.29325 6.39959 6.59434 7.11466 7.76464 8.15310 9.14394 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.002395 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.144855 B =11685.870266 C =12380.270377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.043 3.957 4 C 0.122 3.878 5 N -0.607 5.607 6 C -0.234 4.234 7 H 0.029 0.971 8 C -0.020 4.020 9 N -0.951 5.951 10 Si 0.941 3.059 11 H -0.282 1.282 12 H -0.315 1.315 13 H -0.247 1.247 14 C 0.150 3.850 15 C -0.126 4.126 16 C 0.066 3.934 17 O -0.328 6.328 18 C 0.138 3.862 19 C -0.195 4.195 20 C -0.055 4.055 21 C -0.025 4.025 22 C 0.059 3.941 23 C -0.156 4.156 24 O -0.324 6.324 25 C 0.205 3.795 26 O -0.322 6.322 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.257 0.743 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.140 0.860 44 H 0.105 0.895 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 22.153 -13.893 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.035 4.035 4 C -0.003 4.003 5 N -0.329 5.329 6 C -0.364 4.364 7 H 0.047 0.953 8 C -0.215 4.215 9 N -0.595 5.595 10 Si 0.770 3.230 11 H -0.209 1.209 12 H -0.244 1.244 13 H -0.171 1.171 14 C 0.024 3.976 15 C -0.166 4.166 16 C -0.009 4.009 17 O -0.242 6.242 18 C 0.092 3.908 19 C -0.214 4.214 20 C -0.073 4.073 21 C -0.069 4.069 22 C 0.014 3.986 23 C -0.175 4.175 24 O -0.241 6.241 25 C 0.095 3.905 26 O -0.239 6.239 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.185 0.815 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.122 0.878 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.253 21.759 -13.953 26.376 hybrid contribution -0.155 -0.262 0.543 0.623 sum -5.408 21.497 -13.409 25.907 Atomic orbital electron populations 1.22774 0.81508 1.02373 1.00091 1.88208 1.19698 1.28747 1.95222 1.23384 0.96089 0.84382 0.99678 1.21539 0.91976 0.97865 0.88908 1.44071 1.76942 1.02958 1.08926 1.18346 1.34787 0.82588 1.00642 0.95320 1.25995 0.99712 0.95390 1.00414 1.70062 1.46713 1.10596 1.32170 0.85890 0.78919 0.78710 0.79489 1.20928 1.24428 1.17075 1.20919 0.93810 0.94857 0.87966 1.22120 1.01059 0.98300 0.95113 1.22974 0.85012 1.01191 0.91696 1.86094 1.38256 1.65492 1.34344 1.18561 0.93410 0.91724 0.87098 1.21339 0.98003 1.02144 0.99876 1.20142 0.97166 0.98339 0.91660 1.19899 0.95961 1.01202 0.89875 1.19404 0.88003 0.99615 0.91535 1.19114 0.99774 1.05314 0.93281 1.87330 1.41798 1.49189 1.45761 1.26126 0.74327 0.88852 1.01238 1.87331 1.26373 1.72527 1.37667 0.93996 0.90679 0.92994 0.92639 0.92800 0.94551 0.88745 0.93437 0.92689 0.90349 0.91812 0.94492 0.90679 0.89034 0.81467 0.81840 0.84234 0.87785 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.40 -17.64 10.31 -148.98 -1.54 -19.17 16 3 C 0.04 1.55 6.27 71.98 0.45 2.00 16 4 C 0.12 4.83 4.90 86.38 0.42 5.26 16 5 N -0.61 -26.79 2.04 -702.01 -1.43 -28.23 16 6 C -0.23 -13.10 9.53 84.03 0.80 -12.30 16 7 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 8 C -0.02 -1.14 5.26 84.86 0.45 -0.70 16 9 N -0.95 -60.95 13.97 21.65 0.30 -60.65 16 10 Si 0.94 45.84 25.15 68.60 1.73 47.57 16 11 H -0.28 -13.33 6.66 99.48 0.66 -12.66 16 12 H -0.32 -15.80 7.11 99.48 0.71 -15.09 16 13 H -0.25 -10.92 7.11 99.48 0.71 -10.22 16 14 C 0.15 5.01 5.71 86.38 0.49 5.51 16 15 C -0.13 -3.90 5.86 30.60 0.18 -3.72 16 16 C 0.07 1.53 4.74 71.98 0.34 1.87 16 17 O -0.33 -8.83 10.14 -93.32 -0.95 -9.77 16 18 C 0.14 3.29 6.68 22.48 0.15 3.45 16 19 C -0.20 -3.65 9.03 22.37 0.20 -3.45 16 20 C -0.05 -0.98 10.05 22.34 0.22 -0.75 16 21 C -0.03 -0.55 7.15 22.59 0.16 -0.38 16 22 C 0.06 1.39 7.15 22.58 0.16 1.55 16 23 C -0.16 -3.81 10.00 22.44 0.22 -3.58 16 24 O -0.32 -6.92 11.40 -76.11 -0.87 -7.79 16 25 C 0.21 2.76 8.89 113.37 1.01 3.76 16 26 O -0.32 -6.27 11.41 -77.22 -0.88 -7.15 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.77 5.94 -2.39 -0.01 1.76 16 32 H 0.04 1.66 3.50 -2.39 -0.01 1.65 16 33 H 0.09 2.92 7.92 -2.39 -0.02 2.90 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.05 1.89 8.04 -2.38 -0.02 1.87 16 36 H 0.08 2.04 7.91 -2.39 -0.02 2.02 16 37 H 0.06 1.98 6.00 -2.39 -0.01 1.96 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.08 1.58 7.66 -2.39 -0.02 1.56 16 40 H 0.09 1.58 7.66 -2.38 -0.02 1.56 16 41 H 0.17 2.30 6.29 -2.91 -0.02 2.28 16 42 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.66 367.93 3.83 -72.83 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.95 Total: 11.65 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.52 Total: 0.72 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -1.13 Total: -88.88 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -4.23 Total: -43.89 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.73 Total: 47.57 kcal Total: -76.66 3.83 -72.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459543778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.329 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds